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Probing binding hot spots at protein-RNA recognition sites.
Barik A, Nithin C, Karampudi NB, Mukherjee S, Bahadur RP. Barik A, et al. Among authors: nithin c. Nucleic Acids Res. 2016 Jan 29;44(2):e9. doi: 10.1093/nar/gkv876. Epub 2015 Sep 13. Nucleic Acids Res. 2016. PMID: 26365245 Free PMC article.
Computational modeling of RNA 3D structure based on experimental data.
Ponce-Salvatierra A, Astha, Merdas K, Nithin C, Ghosh P, Mukherjee S, Bujnicki JM. Ponce-Salvatierra A, et al. Among authors: nithin c. Biosci Rep. 2019 Feb 8;39(2):BSR20180430. doi: 10.1042/BSR20180430. Print 2019 Feb 28. Biosci Rep. 2019. PMID: 30670629 Free PMC article. Review.
QRNAS: software tool for refinement of nucleic acid structures.
Stasiewicz J, Mukherjee S, Nithin C, Bujnicki JM. Stasiewicz J, et al. Among authors: nithin c. BMC Struct Biol. 2019 Mar 21;19(1):5. doi: 10.1186/s12900-019-0103-1. BMC Struct Biol. 2019. PMID: 30898165 Free PMC article.
Modeling of Three-Dimensional RNA Structures Using SimRNA.
Wirecki TK, Nithin C, Mukherjee S, Bujnicki JM, Boniecki MJ. Wirecki TK, et al. Among authors: nithin c. Methods Mol Biol. 2020;2165:103-125. doi: 10.1007/978-1-0716-0708-4_6. Methods Mol Biol. 2020. PMID: 32621221
RNA and DNA G-quadruplexes bind to human dicer and inhibit its activity.
Koralewska N, Szczepanska A, Ciechanowska K, Wojnicka M, Pokornowska M, Milewski MC, Gudanis D, Baranowski D, Nithin C, Bujnicki JM, Gdaniec Z, Figlerowicz M, Kurzynska-Kokorniak A. Koralewska N, et al. Among authors: nithin c. Cell Mol Life Sci. 2021 Apr;78(7):3709-3724. doi: 10.1007/s00018-021-03795-w. Epub 2021 Mar 17. Cell Mol Life Sci. 2021. PMID: 33733306 Free PMC article.
Constrained peptides mimic a viral suppressor of RNA silencing.
Kuepper A, McLoughlin NM, Neubacher S, Yeste-Vázquez A, Collado Camps E, Nithin C, Mukherjee S, Bethge L, Bujnicki JM, Brock R, Heinrichs S, Grossmann TN. Kuepper A, et al. Among authors: nithin c. Nucleic Acids Res. 2021 Dec 16;49(22):12622-12633. doi: 10.1093/nar/gkab1149. Nucleic Acids Res. 2021. PMID: 34871435 Free PMC article.
Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26.
Salerno-Kochan A, Horn A, Ghosh P, Nithin C, Kościelniak A, Meindl A, Strauss D, Krutyhołowa R, Rossbach O, Bujnicki JM, Gaik M, Medenbach J, Glatt S. Salerno-Kochan A, et al. Among authors: nithin c. Life Sci Alliance. 2022 May 5;5(8):e202201418. doi: 10.26508/lsa.202201418. Print 2022 Aug. Life Sci Alliance. 2022. PMID: 35512835 Free PMC article.
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models.
Gumna J, Antczak M, Adamiak RW, Bujnicki JM, Chen SJ, Ding F, Ghosh P, Li J, Mukherjee S, Nithin C, Pachulska-Wieczorek K, Ponce-Salvatierra A, Popenda M, Sarzynska J, Wirecki T, Zhang D, Zhang S, Zok T, Westhof E, Miao Z, Szachniuk M, Rybarczyk A. Gumna J, et al. Among authors: nithin c. Int J Mol Sci. 2022 Aug 25;23(17):9630. doi: 10.3390/ijms23179630. Int J Mol Sci. 2022. PMID: 36077037 Free PMC article.
24 results