Pichot F - Search Results

1

NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination.

Werner S, Galliot A, Pichot F, Kemmer T, Marchand V, Sednev MV, Lence T, Roignant JY, König J, Höbartner C, Motorin Y, Hildebrandt A, Helm M. Werner S, et al. Among authors: pichot f. Nucleic Acids Res. 2021 Feb 26;49(4):e23. doi: 10.1093/nar/gkaa1173. Nucleic Acids Res. 2021. PMID: 33313868 Free PMC article.

2

Next-Generation Sequencing-Based RiboMethSeq Protocol for Analysis of tRNA 2'-O-Methylation.

Marchand V, Pichot F, Thüring K, Ayadi L, Freund I, Dalpke A, Helm M, Motorin Y. Marchand V, et al. Among authors: pichot f. Biomolecules. 2017 Feb 9;7(1):13. doi: 10.3390/biom7010013. Biomolecules. 2017. PMID: 28208788 Free PMC article.

3

RNA ribose methylation (2'-O-methylation): Occurrence, biosynthesis and biological functions.

Ayadi L, Galvanin A, Pichot F, Marchand V, Motorin Y. Ayadi L, et al. Among authors: pichot f. Biochim Biophys Acta Gene Regul Mech. 2019 Mar;1862(3):253-269. doi: 10.1016/j.bbagrm.2018.11.009. Epub 2018 Dec 17. Biochim Biophys Acta Gene Regul Mech. 2019. PMID: 30572123 Review.

4

2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms.

Freund I, Buhl DK, Boutin S, Kotter A, Pichot F, Marchand V, Vierbuchen T, Heine H, Motorin Y, Helm M, Dalpke AH, Eigenbrod T. Freund I, et al. Among authors: pichot f. RNA. 2019 Jul;25(7):869-880. doi: 10.1261/rna.070243.118. Epub 2019 Apr 24. RNA. 2019. PMID: 31019095 Free PMC article.

5

Holistic Optimization of Bioinformatic Analysis Pipeline for Detection and Quantification of 2'-O-Methylations in RNA by RiboMethSeq.

Pichot F, Marchand V, Ayadi L, Bourguignon-Igel V, Helm M, Motorin Y. Pichot F, et al. Front Genet. 2020 Feb 13;11:38. doi: 10.3389/fgene.2020.00038. eCollection 2020. Front Genet. 2020. PMID: 32117451 Free PMC article.

6

HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA.

Marchand V, Pichot F, Neybecker P, Ayadi L, Bourguignon-Igel V, Wacheul L, Lafontaine DLJ, Pinzano A, Helm M, Motorin Y. Marchand V, et al. Among authors: pichot f. Nucleic Acids Res. 2020 Nov 4;48(19):e110. doi: 10.1093/nar/gkaa769. Nucleic Acids Res. 2020. PMID: 32976574 Free PMC article.

7

Non-Redundant tRNA Reference Sequences for Deep Sequencing Analysis of tRNA Abundance and Epitranscriptomic RNA Modifications.

Pichot F, Marchand V, Helm M, Motorin Y. Pichot F, et al. Genes (Basel). 2021 Jan 10;12(1):81. doi: 10.3390/genes12010081. Genes (Basel). 2021. PMID: 33435213 Free PMC article.

8

Machine learning algorithm for precise prediction of 2'-O-methylation (Nm) sites from experimental RiboMethSeq datasets.

Pichot F, Marchand V, Helm M, Motorin Y. Pichot F, et al. Methods. 2022 Jul;203:311-321. doi: 10.1016/j.ymeth.2022.03.007. Epub 2022 Mar 18. Methods. 2022. PMID: 35314341

9

Quantification of substoichiometric modification reveals global tsRNA hypomodification, preferences for angiogenin-mediated tRNA cleavage, and idiosyncratic epitranscriptomes of human neuronal cell-lines.

Pichot F, Hogg MC, Marchand V, Bourguignon V, Jirström E, Farrell C, Gibriel HA, Prehn JHM, Motorin Y, Helm M. Pichot F, et al. Comput Struct Biotechnol J. 2022 Dec 19;21:401-417. doi: 10.1016/j.csbj.2022.12.020. eCollection 2023. Comput Struct Biotechnol J. 2022. PMID: 36618980 Free PMC article.

10

Data Analysis Pipeline for Detection and Quantification of Pseudouridine (ψ) in RNA by HydraPsiSeq.

Pichot F, Marchand V, Helm M, Motorin Y. Pichot F, et al. Methods Mol Biol. 2023;2624:207-223. doi: 10.1007/978-1-0716-2962-8_14. Methods Mol Biol. 2023. PMID: 36723818

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