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Natural variants suppress mutations in hundreds of essential genes.
Parts L, Batté A, Lopes M, Yuen MW, Laver M, San Luis BJ, Yue JX, Pons C, Eray E, Aloy P, Liti G, van Leeuwen J. Parts L, et al. Among authors: yue jx. Mol Syst Biol. 2021 May;17(5):e10138. doi: 10.15252/msb.202010138. Mol Syst Biol. 2021. PMID: 34042294 Free PMC article.
Ploidy influences the functional attributes of de novo lager yeast hybrids.
Krogerus K, Arvas M, De Chiara M, Magalhães F, Mattinen L, Oja M, Vidgren V, Yue JX, Liti G, Gibson B. Krogerus K, et al. Among authors: yue jx. Appl Microbiol Biotechnol. 2016 Aug;100(16):7203-22. doi: 10.1007/s00253-016-7588-3. Epub 2016 May 17. Appl Microbiol Biotechnol. 2016. PMID: 27183995 Free PMC article.
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms.
Giordano F, Aigrain L, Quail MA, Coupland P, Bonfield JK, Davies RM, Tischler G, Jackson DK, Keane TM, Li J, Yue JX, Liti G, Durbin R, Ning Z. Giordano F, et al. Among authors: yue jx. Sci Rep. 2017 Jun 21;7(1):3935. doi: 10.1038/s41598-017-03996-z. Sci Rep. 2017. PMID: 28638050 Free PMC article.
Genome evolution across 1,011 Saccharomyces cerevisiae isolates.
Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergström A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, Barbry P, Engelen S, Lemainque A, Wincker P, Liti G, Schacherer J. Peter J, et al. Among authors: yue jx. Nature. 2018 Apr;556(7701):339-344. doi: 10.1038/s41586-018-0030-5. Epub 2018 Apr 11. Nature. 2018. PMID: 29643504 Free PMC article.
Long-read sequencing data analysis for yeasts.
Yue JX, Liti G. Yue JX, et al. Nat Protoc. 2018 Jun;13(6):1213-1231. doi: 10.1038/nprot.2018.025. Epub 2018 May 3. Nat Protoc. 2018. PMID: 29725120 Free article.
simuG: a general-purpose genome simulator.
Yue JX, Liti G. Yue JX, et al. Bioinformatics. 2019 Nov 1;35(21):4442-4444. doi: 10.1093/bioinformatics/btz424. Bioinformatics. 2019. PMID: 31116378 Free PMC article.
71 results