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3D genomics across the tree of life reveals condensin II as a determinant of architecture type.
Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T, Sedeño Cacciatore Á, Contessoto VG, van Heesbeen RGHP, van den Broek B, Mhaskar AN, Teunissen H, St Hilaire BG, Weisz D, Omer AD, Pham M, Colaric Z, Yang Z, Rao SSP, Mitra N, Lui C, Yao W, Khan R, Moroz LL, Kohn A, St Leger J, Mena A, Holcroft K, Gambetta MC, Lim F, Farley E, Stein N, Haddad A, Chauss D, Mutlu AS, Wang MC, Young ND, Hildebrandt E, Cheng HH, Knight CJ, Burnham TLU, Hovel KA, Beel AJ, Mattei PJ, Kornberg RD, Warren WC, Cary G, Gómez-Skarmeta JL, Hinman V, Lindblad-Toh K, Di Palma F, Maeshima K, Multani AS, Pathak S, Nel-Themaat L, Behringer RR, Kaur P, Medema RH, van Steensel B, de Wit E, Onuchic JN, Di Pierro M, Lieberman Aiden E, Rowland BD. Hoencamp C, et al. Among authors: van den broek b, van schaik t, van steensel b, van heesbeen rghp. Science. 2021 May 28;372(6545):984-989. doi: 10.1126/science.abe2218. Science. 2021. PMID: 34045355 Free PMC article.
Promoter-Intrinsic and Local Chromatin Features Determine Gene Repression in LADs.
Leemans C, van der Zwalm MCH, Brueckner L, Comoglio F, van Schaik T, Pagie L, van Arensbergen J, van Steensel B. Leemans C, et al. Among authors: van arensbergen j, van der zwalm mch, van schaik t, van steensel b. Cell. 2019 May 2;177(4):852-864.e14. doi: 10.1016/j.cell.2019.03.009. Epub 2019 Apr 11. Cell. 2019. PMID: 30982597 Free PMC article.
Local rewiring of genome-nuclear lamina interactions by transcription.
Brueckner L, Zhao PA, van Schaik T, Leemans C, Sima J, Peric-Hupkes D, Gilbert DM, van Steensel B. Brueckner L, et al. Among authors: van schaik t, van steensel b. EMBO J. 2020 Mar 16;39(6):e103159. doi: 10.15252/embj.2019103159. Epub 2020 Feb 21. EMBO J. 2020. PMID: 32080885 Free PMC article.
Cell cycle dynamics of lamina-associated DNA.
van Schaik T, Vos M, Peric-Hupkes D, Hn Celie P, van Steensel B. van Schaik T, et al. Among authors: van steensel b. EMBO Rep. 2020 Nov 5;21(11):e50636. doi: 10.15252/embr.202050636. Epub 2020 Sep 7. EMBO Rep. 2020. PMID: 32893442 Free PMC article.
SPIN reveals genome-wide landscape of nuclear compartmentalization.
Wang Y, Zhang Y, Zhang R, van Schaik T, Zhang L, Sasaki T, Peric-Hupkes D, Chen Y, Gilbert DM, van Steensel B, Belmont AS, Ma J. Wang Y, et al. Among authors: van schaik t, van steensel b. Genome Biol. 2021 Jan 14;22(1):36. doi: 10.1186/s13059-020-02253-3. Genome Biol. 2021. PMID: 33446254 Free PMC article.
Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance.
Schep R, Brinkman EK, Leemans C, Vergara X, van der Weide RH, Morris B, van Schaik T, Manzo SG, Peric-Hupkes D, van den Berg J, Beijersbergen RL, Medema RH, van Steensel B. Schep R, et al. Among authors: van den berg j, van der weide rh, van schaik t, van steensel b. Mol Cell. 2021 May 20;81(10):2216-2230.e10. doi: 10.1016/j.molcel.2021.03.032. Epub 2021 Apr 12. Mol Cell. 2021. PMID: 33848455 Free PMC article.
60 results