Benyamini H - Search Results

1

UMSBP2 is chromatin remodeler that functions in regulation of gene expression and suppression of antigenic variation in trypanosomes.

Soni A, Klebanov-Akopyan O, Erben E, Plaschkes I, Benyamini H, Mitesser V, Harel A, Yamin K, Onn I, Shlomai J. Soni A, et al. Among authors: benyamini h. Nucleic Acids Res. 2023 Jun 23;51(11):5678-5698. doi: 10.1093/nar/gkad402. Nucleic Acids Res. 2023. PMID: 37207337 Free PMC article.

2

Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways.

Khurana V, Peng J, Chung CY, Auluck PK, Fanning S, Tardiff DF, Bartels T, Koeva M, Eichhorn SW, Benyamini H, Lou Y, Nutter-Upham A, Baru V, Freyzon Y, Tuncbag N, Costanzo M, San Luis BJ, Schöndorf DC, Barrasa MI, Ehsani S, Sanjana N, Zhong Q, Gasser T, Bartel DP, Vidal M, Deleidi M, Boone C, Fraenkel E, Berger B, Lindquist S. Khurana V, et al. Among authors: benyamini h. Cell Syst. 2017 Feb 22;4(2):157-170.e14. doi: 10.1016/j.cels.2016.12.011. Epub 2017 Jan 25. Cell Syst. 2017. PMID: 28131822 Free PMC article.

3

The STIL protein contains intrinsically disordered regions that mediate its protein-protein interactions.

Amartely H, David A, Lebendiker M, Benyamini H, Izraeli S, Friedler A. Amartely H, et al. Among authors: benyamini h. Chem Commun (Camb). 2014 May 25;50(40):5245-7. doi: 10.1039/c3cc45096a. Epub 2013 Sep 11. Chem Commun (Camb). 2014. PMID: 24022511

4

Multiple structural alignment by secondary structures: algorithm and applications.

Dror O, Benyamini H, Nussinov R, Wolfson HJ. Dror O, et al. Among authors: benyamini h. Protein Sci. 2003 Nov;12(11):2492-507. doi: 10.1110/ps.03200603. Protein Sci. 2003. PMID: 14573862 Free PMC article.

5

Protein structure prediction via combinatorial assembly of sub-structural units.

Inbar Y, Benyamini H, Nussinov R, Wolfson HJ. Inbar Y, et al. Among authors: benyamini h. Bioinformatics. 2003;19 Suppl 1:i158-68. doi: 10.1093/bioinformatics/btg1020. Bioinformatics. 2003. PMID: 12855452

6

The C-terminal domain of the HIV-1 Vif protein is natively unfolded in its unbound state.

Reingewertz TH, Benyamini H, Lebendiker M, Shalev DE, Friedler A. Reingewertz TH, et al. Among authors: benyamini h. Protein Eng Des Sel. 2009 May;22(5):281-7. doi: 10.1093/protein/gzp004. Epub 2009 Feb 13. Protein Eng Des Sel. 2009. PMID: 19218568

7

Prediction of multimolecular assemblies by multiple docking.

Inbar Y, Benyamini H, Nussinov R, Wolfson HJ. Inbar Y, et al. Among authors: benyamini h. J Mol Biol. 2005 Jun 3;349(2):435-47. doi: 10.1016/j.jmb.2005.03.039. Epub 2005 Apr 13. J Mol Biol. 2005. PMID: 15890207

8

MASS: multiple structural alignment by secondary structures.

Dror O, Benyamini H, Nussinov R, Wolfson H. Dror O, et al. Among authors: benyamini h. Bioinformatics. 2003;19 Suppl 1:i95-104. doi: 10.1093/bioinformatics/btg1012. Bioinformatics. 2003. PMID: 12855444

9

Interaction of c(60)-fullerene and carboxyfullerene with proteins: docking and binding site alignment.

Benyamini H, Shulman-Peleg A, Wolfson HJ, Belgorodsky B, Fadeev L, Gozin M. Benyamini H, et al. Bioconjug Chem. 2006 Mar-Apr;17(2):378-86. doi: 10.1021/bc050299g. Bioconjug Chem. 2006. PMID: 16536469

10

Fibril modelling by sequence and structure conservation analysis combined with protein docking techniques: beta(2)-microglobulin amyloidosis.

Benyamini H, Gunasekaran K, Wolfson H, Nussinov R. Benyamini H, et al. Biochim Biophys Acta. 2005 Nov 10;1753(1):121-30. doi: 10.1016/j.bbapap.2005.07.012. Epub 2005 Aug 2. Biochim Biophys Acta. 2005. PMID: 16107326 Review.

11

Beta2-microglobulin amyloidosis: insights from conservation analysis and fibril modelling by protein docking techniques.

Benyamini H, Gunasekaran K, Wolfson H, Nussinov R. Benyamini H, et al. J Mol Biol. 2003 Jun 27;330(1):159-74. doi: 10.1016/s0022-2836(03)00557-6. J Mol Biol. 2003. PMID: 12818210

12

Single-cell transcriptomics reveals a senescence-associated IL-6/CCR6 axis driving radiodermatitis.

Paldor M, Levkovitch-Siany O, Eidelshtein D, Adar R, Enk CD, Marmary Y, Elgavish S, Nevo Y, Benyamini H, Plaschkes I, Klein S, Mali A, Rose-John S, Peled A, Galun E, Axelrod JH. Paldor M, et al. Among authors: benyamini h. EMBO Mol Med. 2022 Aug 8;14(8):e15653. doi: 10.15252/emmm.202115653. Epub 2022 Jul 4. EMBO Mol Med. 2022. PMID: 35785521 Free PMC article.

13

P450 oxidoreductase regulates barrier maturation by mediating retinoic acid metabolism in a model of the human BBB.

Zlotnik D, Rabinski T, Halfon A, Anzi S, Plaschkes I, Benyamini H, Nevo Y, Gershoni OY, Rosental B, Hershkovitz E, Ben-Zvi A, Vatine GD. Zlotnik D, et al. Among authors: benyamini h. Stem Cell Reports. 2022 Sep 13;17(9):2050-2063. doi: 10.1016/j.stemcr.2022.07.010. Epub 2022 Aug 11. Stem Cell Reports. 2022. PMID: 35961311 Free PMC article.

14

Chronic Intermittent Hypoxia during Sleep Causes Browning of Interscapular Adipose Tissue Accompanied by Local Insulin Resistance in Mice.

Dahan T, Nassar S, Yajuk O, Steinberg E, Benny O, Abudi N, Plaschkes I, Benyamini H, Gozal D, Abramovitch R, Gileles-Hillel A. Dahan T, et al. Among authors: benyamini h. Int J Mol Sci. 2022 Dec 7;23(24):15462. doi: 10.3390/ijms232415462. Int J Mol Sci. 2022. PMID: 36555109 Free PMC article.

15

Transcriptome analysis of atad3-null zebrafish embryos elucidates possible disease mechanisms.

Ezer S, Ronin N, Yanovsky-Dagan S, Rotem-Bamberger S, Halstuk O, Wexler Y, Ben-Moshe Z, Plaschkes I, Benyamini H, Saada A, Inbal A, Harel T. Ezer S, et al. Among authors: benyamini h. Orphanet J Rare Dis. 2025 Apr 15;20(1):181. doi: 10.1186/s13023-025-03709-0. Orphanet J Rare Dis. 2025. PMID: 40234890 Free PMC article.

16

A structural model of the HIV-1 Rev-integrase complex: the molecular basis of integrase regulation by Rev.

Benyamini H, Loyter A, Friedler A. Benyamini H, et al. Biochem Biophys Res Commun. 2011 Dec 16;416(3-4):252-7. doi: 10.1016/j.bbrc.2011.10.116. Epub 2011 Nov 10. Biochem Biophys Res Commun. 2011. PMID: 22093836

17

Replicative Stress Coincides with Impaired Nuclear DNA Damage Response in COX4-1 Deficiency.

Douiev L, Miller C, Keller G, Benyamini H, Abu-Libdeh B, Saada A. Douiev L, et al. Among authors: benyamini h. Int J Mol Sci. 2022 Apr 8;23(8):4149. doi: 10.3390/ijms23084149. Int J Mol Sci. 2022. PMID: 35456968 Free PMC article.

18

Mesenchymal Stromal Cell-Derived Small Extracellular Vesicles Modulate Apoptosis, TNF Alpha and Interferon Gamma Response Gene mRNA Expression in T Lymphocytes.

Fracchia A, Khare D, Da'na S, Or R, Buxboim A, Nachmias B, Barkatz C, Golan-Gerstl R, Tiwari S, Stepensky P, Nevo Y, Benyamini H, Elgavish S, Almogi-Hazan O, Avni B. Fracchia A, et al. Among authors: benyamini h. Int J Mol Sci. 2023 Sep 5;24(18):13689. doi: 10.3390/ijms241813689. Int J Mol Sci. 2023. PMID: 37761990 Free PMC article.

19

Upregulation of COX4-2 via HIF-1α in Mitochondrial COX4-1 Deficiency.

Douiev L, Miller C, Ruppo S, Benyamini H, Abu-Libdeh B, Saada A. Douiev L, et al. Among authors: benyamini h. Cells. 2021 Feb 20;10(2):452. doi: 10.3390/cells10020452. Cells. 2021. PMID: 33672589 Free PMC article.

20

Long Noncoding RNA MALAT1 Promotes Hepatocellular Carcinoma Development by SRSF1 Upregulation and mTOR Activation.

Malakar P, Shilo A, Mogilevsky A, Stein I, Pikarsky E, Nevo Y, Benyamini H, Elgavish S, Zong X, Prasanth KV, Karni R. Malakar P, et al. Among authors: benyamini h. Cancer Res. 2017 Mar 1;77(5):1155-1167. doi: 10.1158/0008-5472.CAN-16-1508. Epub 2016 Dec 19. Cancer Res. 2017. PMID: 27993818 Free PMC article.

21

Correction: Early age decline in DNA repair capacity in the liver: in depth profile of differential gene expression.

Guedj A, Geiger-Maor A, Benyamini H, Nevo Y, Elgavish S, Galun E, Amsalem H, Rachmilewitz J. Guedj A, et al. Among authors: benyamini h. Aging (Albany NY). 2017 May 30;9(6):1640. doi: 10.18632/aging.101242. Aging (Albany NY). 2017. PMID: 28687000 Free PMC article. No abstract available.

22

Hepatic adropin is regulated by estrogen and contributes to adverse metabolic phenotypes in ovariectomized mice.

Stokar J, Gurt I, Cohen-Kfir E, Yakubovsky O, Hallak N, Benyamini H, Lishinsky N, Offir N, Tam J, Dresner-Pollak R. Stokar J, et al. Among authors: benyamini h. Mol Metab. 2022 Jun;60:101482. doi: 10.1016/j.molmet.2022.101482. Epub 2022 Mar 29. Mol Metab. 2022. PMID: 35364299 Free PMC article.

23

Early age decline in DNA repair capacity in the liver: in depth profile of differential gene expression.

Guedj A, Geiger-Maor A, Galun E, Benyamini H, Nevo Y, Elgavish Sh, Amsalem H, Rachmilewitz J. Guedj A, et al. Among authors: benyamini h. Aging (Albany NY). 2016 Nov 30;8(11):3131-3146. doi: 10.18632/aging.101120. Aging (Albany NY). 2016. PMID: 27922819 Free PMC article.

24

Upregulation of Hallmark Muscle Genes Protects GneM743T/M743T Mutated Knock-In Mice From Kidney and Muscle Phenotype.

Benyamini H, Kling Y, Yakovlev L, Becker Cohen M, Nevo Y, Elgavish S, Harazi A, Argov Z, Sela I, Mitrani-Rosenbaum S. Benyamini H, et al. J Neuromuscul Dis. 2020;7(2):119-136. doi: 10.3233/JND-190461. J Neuromuscul Dis. 2020. PMID: 31985472 Free PMC article.

25

Empty SV40 capsids increase survival of septic rats by eliciting numerous host signaling networks that participate in a number of systemic functions.

Ben-Nun-Shaul O, Srivastava R, Elgavish S, Gandhi S, Nevo Y, Benyamini H, Eden A, Oppenheim A. Ben-Nun-Shaul O, et al. Among authors: benyamini h. Oncotarget. 2020 Feb 11;11(6):574-588. doi: 10.18632/oncotarget.27448. eCollection 2020 Feb 11. Oncotarget. 2020. PMID: 32110278 Free PMC article.

26

Triangular correlation (TrC) between cancer aggressiveness, cell uptake capability, and cell deformability.

Brill-Karniely Y, Dror D, Duanis-Assaf T, Goldstein Y, Schwob O, Millo T, Orehov N, Stern T, Jaber M, Loyfer N, Vosk-Artzi M, Benyamini H, Bielenberg D, Kaplan T, Buganim Y, Reches M, Benny O. Brill-Karniely Y, et al. Among authors: benyamini h. Sci Adv. 2020 Jan 15;6(3):eaax2861. doi: 10.1126/sciadv.aax2861. eCollection 2020 Jan. Sci Adv. 2020. PMID: 31998832 Free PMC article.

27

Cyclic peptide inhibitors of HIV-1 integrase derived from the LEDGF/p75 protein.

Hayouka Z, Hurevich M, Levin A, Benyamini H, Iosub A, Maes M, Shalev DE, Loyter A, Gilon C, Friedler A. Hayouka Z, et al. Among authors: benyamini h. Bioorg Med Chem. 2010 Dec 1;18(23):8388-95. doi: 10.1016/j.bmc.2010.09.046. Epub 2010 Oct 1. Bioorg Med Chem. 2010. PMID: 20974536

28

A model for the interaction between NF-kappa-B and ASPP2 suggests an I-kappa-B-like binding mechanism.

Benyamini H, Leonov H, Rotem S, Katz C, Arkin IT, Friedler A. Benyamini H, et al. Proteins. 2009 Nov 15;77(3):602-11. doi: 10.1002/prot.22473. Proteins. 2009. PMID: 19507243

29

Peptides that bind the HIV-1 integrase and modulate its enzymatic activity--kinetic studies and mode of action.

Levin A, Benyamini H, Hayouka Z, Friedler A, Loyter A. Levin A, et al. Among authors: benyamini h. FEBS J. 2011 Jan;278(2):316-30. doi: 10.1111/j.1742-4658.2010.07952.x. Epub 2010 Dec 13. FEBS J. 2011. PMID: 21156026 Free article.

30

Senolytic elimination of Cox2-expressing senescent cells inhibits the growth of premalignant pancreatic lesions.

Kolodkin-Gal D, Roitman L, Ovadya Y, Azazmeh N, Assouline B, Schlesinger Y, Kalifa R, Horwitz S, Khalatnik Y, Hochner-Ger A, Imam A, Demma JA, Winter E, Benyamini H, Elgavish S, Khatib AA, Meir K, Atlan K, Pikarsky E, Parnas O, Dor Y, Zamir G, Ben-Porath I, Krizhanovsky V. Kolodkin-Gal D, et al. Among authors: benyamini h. Gut. 2022 Feb;71(2):345-355. doi: 10.1136/gutjnl-2020-321112. Epub 2021 Mar 1. Gut. 2022. PMID: 33649045 Free PMC article.

31

Combined hepatocellular-cholangiocarcinoma derives from liver progenitor cells and depends on senescence and IL-6 trans-signaling.

Rosenberg N, Van Haele M, Lanton T, Brashi N, Bromberg Z, Adler H, Giladi H, Peled A, Goldenberg DS, Axelrod JH, Simerzin A, Chai C, Paldor M, Markezana A, Yaish D, Shemulian Z, Gross D, Barnoy S, Gefen M, Amran O, Claerhout S, Fernández-Vaquero M, García-Beccaria M, Heide D, Shoshkes-Carmel M, Schmidt Arras D, Elgavish S, Nevo Y, Benyamini H, Tirnitz-Parker JEE, Sanchez A, Herrera B, Safadi R, Kaestner KH, Rose-John S, Roskams T, Heikenwalder M, Galun E. Rosenberg N, et al. Among authors: benyamini h. J Hepatol. 2022 Dec;77(6):1631-1641. doi: 10.1016/j.jhep.2022.07.029. Epub 2022 Aug 18. J Hepatol. 2022. PMID: 35988690

32

Mesenchymal Stem Cell-Derived Extracellular Vesicles as Proposed Therapy in a Rat Model of Cerebral Small Vessel Disease.

Guy R, Herman S, Benyamini H, Ben-Zur T, Kobo H, Pasmanik-Chor M, Yaacobi D, Barel E, Yagil C, Yagil Y, Offen D. Guy R, et al. Among authors: benyamini h. Int J Mol Sci. 2022 Sep 23;23(19):11211. doi: 10.3390/ijms231911211. Int J Mol Sci. 2022. PMID: 36232513 Free PMC article.

33

The ASPP interaction network: electrostatic differentiation between pro- and anti-apoptotic proteins.

Benyamini H, Friedler A. Benyamini H, et al. J Mol Recognit. 2011 Mar-Apr;24(2):266-74. doi: 10.1002/jmr.1048. J Mol Recognit. 2011. PMID: 20623514

34

The structure and interactions of the proline-rich domain of ASPP2.

Rotem S, Katz C, Benyamini H, Lebendiker M, Veprintsev D, Rüdiger S, Danieli T, Friedler A. Rotem S, et al. Among authors: benyamini h. J Biol Chem. 2008 Jul 4;283(27):18990-9. doi: 10.1074/jbc.M708717200. Epub 2008 Apr 30. J Biol Chem. 2008. PMID: 18448430 Free article.

35

Modeling sex differences in humans using isogenic induced pluripotent stem cells.

Waldhorn I, Turetsky T, Steiner D, Gil Y, Benyamini H, Gropp M, Reubinoff BE. Waldhorn I, et al. Among authors: benyamini h. Stem Cell Reports. 2022 Dec 13;17(12):2732-2744. doi: 10.1016/j.stemcr.2022.10.017. Epub 2022 Nov 24. Stem Cell Reports. 2022. PMID: 36427492 Free PMC article.

36

Molecular basis of the interaction between the antiapoptotic Bcl-2 family proteins and the proapoptotic protein ASPP2.

Katz C, Benyamini H, Rotem S, Lebendiker M, Danieli T, Iosub A, Refaely H, Dines M, Bronner V, Bravman T, Shalev DE, Rüdiger S, Friedler A. Katz C, et al. Among authors: benyamini h. Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12277-82. doi: 10.1073/pnas.0711269105. Epub 2008 Aug 21. Proc Natl Acad Sci U S A. 2008. PMID: 18719108 Free PMC article.

37

Using peptides to study protein-protein interactions.

Benyamini H, Friedler A. Benyamini H, et al. Future Med Chem. 2010 Jun;2(6):989-1003. doi: 10.4155/fmc.10.196. Future Med Chem. 2010. PMID: 21426115 Review.

38

Deep sequencing of proteotoxicity modifier genes uncovers a Presenilin-2/beta-amyloid-actin genetic risk module shared among alpha-synucleinopathies.

Nazeen S, Wang X, Zielinski D, Lam I, Hallacli E, Xu P, Ethier E, Strom R, Zanella CA, Nithianandam V, Ritter D, Henderson A, Saurat N, Afroz J, Nutter-Upham A, Benyamini H, Copty J, Ravishankar S, Morrow A, Mitchel J, Neavin D, Gupta R, Farbehi N, Grundman J, Myers RH, Scherzer CR, Trojanowski JQ, Van Deerlin VM, Cooper AA, Lee EB, Erlich Y, Lindquist S, Peng J, Geschwind DH, Powell J, Studer L, Feany MB, Sunyaev SR, Khurana V. Nazeen S, et al. Among authors: benyamini h. bioRxiv [Preprint]. 2024 Mar 7:2024.03.03.583145. doi: 10.1101/2024.03.03.583145. bioRxiv. 2024. PMID: 38496508 Free PMC article. Preprint.

39

P. gingivalis-Induced TLR2 Interactome Analysis Reveals Association with PARP9.

Pandi K, Angabo S, Makkawi H, Benyamini H, Elgavish S, Nussbaum G. Pandi K, et al. Among authors: benyamini h. J Dent Res. 2024 Mar;103(3):329-338. doi: 10.1177/00220345231222181. Epub 2024 Feb 12. J Dent Res. 2024. PMID: 38344758

40

Asynchronous Pattern of MAPKs' Activity during Aging of Different Tissues and of Distinct Types of Skeletal Muscle.

Gilad N, Mohanam MP, Darlyuk-Saadon I, Heng CKM, Plaschkes I, Benyamini H, Berezhnoy NV, Engelberg D. Gilad N, et al. Among authors: benyamini h. Int J Mol Sci. 2024 Jan 30;25(3):1713. doi: 10.3390/ijms25031713. Int J Mol Sci. 2024. PMID: 38338990 Free PMC article.

41

Hindbrain boundaries as niches of neural progenitor and stem cells regulated by the extracellular matrix proteoglycan chondroitin sulphate.

Hutchings C, Nuriel Y, Lazar D, Kohl A, Muir E, Genin O, Cinnamon Y, Benyamini H, Nevo Y, Sela-Donenfeld D. Hutchings C, et al. Among authors: benyamini h. Development. 2024 Feb 15;151(4):dev201934. doi: 10.1242/dev.201934. Epub 2024 Feb 13. Development. 2024. PMID: 38251863 Free PMC article.

42

AN1284 attenuates steatosis, lipogenesis, and fibrosis in mice with pre-existing non-alcoholic steatohepatitis and directly affects aryl hydrocarbon receptor in a hepatic cell line.

Yehezkel AS, Abudi N, Nevo Y, Benyamini H, Elgavish S, Weinstock M, Abramovitch R. Yehezkel AS, et al. Among authors: benyamini h. Front Endocrinol (Lausanne). 2023 Aug 16;14:1226808. doi: 10.3389/fendo.2023.1226808. eCollection 2023. Front Endocrinol (Lausanne). 2023. PMID: 37664863 Free PMC article.

43

Amyloidogenic light chains impair plasma cell survival.

Pick M, Lebel E, Elgavish S, Benyamini H, Nevo Y, Hertz R, Bar-Tana J, Rognoni P, Merlini G, Gatt ME. Pick M, et al. Among authors: benyamini h. Haematologica. 2023 Dec 1;108(12):3359-3371. doi: 10.3324/haematol.2022.282484. Haematologica. 2023. PMID: 37381778 Free PMC article.

44

Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.

Inbar Y, Benyamini H, Nussinov R, Wolfson HJ. Inbar Y, et al. Among authors: benyamini h. Phys Biol. 2005 Nov 9;2(4):S156-65. doi: 10.1088/1478-3975/2/4/S10. Phys Biol. 2005. PMID: 16280621

45

Formation and characterization of stable human serum albumin-tris-malonic acid [C60]fullerene complex.

Belgorodsky B, Fadeev L, Ittah V, Benyamini H, Zelner S, Huppert D, Kotlyar AB, Gozin M. Belgorodsky B, et al. Among authors: benyamini h. Bioconjug Chem. 2005 Sep-Oct;16(5):1058-62. doi: 10.1021/bc050103c. Bioconjug Chem. 2005. PMID: 16173780

46

Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking.

Schneidman-Duhovny D, Inbar Y, Polak V, Shatsky M, Halperin I, Benyamini H, Barzilai A, Dror O, Haspel N, Nussinov R, Wolfson HJ. Schneidman-Duhovny D, et al. Among authors: benyamini h. Proteins. 2003 Jul 1;52(1):107-12. doi: 10.1002/prot.10397. Proteins. 2003. PMID: 12784375

47

Conservation and amyloid formation: a study of the gelsolin-like family.

Benyamini H, Gunasekaran K, Wolfson H, Nussinov R. Benyamini H, et al. Proteins. 2003 May 1;51(2):266-82. doi: 10.1002/prot.10359. Proteins. 2003. PMID: 12660995

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