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A maChine and deep Learning Approach to predict pulmoNary hyperteNsIon in newbornS with congenital diaphragmatic Hernia (CLANNISH): Protocol for a retrospective study.
Amodeo I, De Nunzio G, Raffaeli G, Borzani I, Griggio A, Conte L, Macchini F, Condò V, Persico N, Fabietti I, Ghirardello S, Pierro M, Tafuri B, Como G, Cascio D, Colnaghi M, Mosca F, Cavallaro G. Amodeo I, et al. Among authors: cascio d. PLoS One. 2021 Nov 9;16(11):e0259724. doi: 10.1371/journal.pone.0259724. eCollection 2021. PLoS One. 2021. PMID: 34752491 Free PMC article.
Congenital diaphragmatic hernia: automatic lung and liver MRI segmentation with nnU-Net, reproducibility of pyradiomics features, and a machine learning application for the classification of liver herniation.
Conte L, Amodeo I, De Nunzio G, Raffaeli G, Borzani I, Persico N, Griggio A, Como G, Cascio D, Colnaghi M, Mosca F, Cavallaro G. Conte L, et al. Among authors: cascio d. Eur J Pediatr. 2024 Feb 28. doi: 10.1007/s00431-024-05476-9. Online ahead of print. Eur J Pediatr. 2024. PMID: 38416256
A completely automated CAD system for mass detection in a large mammographic database.
Bellotti R, De Carlo F, Tangaro S, Gargano G, Maggipinto G, Castellano M, Massafra R, Cascio D, Fauci F, Magro R, Raso G, Lauria A, Forni G, Bagnasco S, Cerello P, Zanon E, Cheran SC, Lopez Torres E, Bottigli U, Masala GL, Oliva P, Retico A, Fantacci ME, Cataldo R, De Mitri I, De Nunzio G. Bellotti R, et al. Among authors: cascio d. Med Phys. 2006 Aug;33(8):3066-75. doi: 10.1118/1.2214177. Med Phys. 2006. PMID: 16964885
MAGIC-5: an Italian mammographic database of digitised images for research.
Tangaro S, Bellotti R, De Carlo F, Gargano G, Lattanzio E, Monno P, Massafra R, Delogu P, Fantacci ME, Retico A, Bazzocchi M, Bagnasco S, Cerello P, Cheran SC, Lopez Torres E, Zanon E, Lauria A, Sodano A, Cascio D, Fauci F, Magro R, Raso G, Ienzi R, Bottigli U, Masala GL, Oliva P, Meloni G, Caricato AP, Cataldo R. Tangaro S, et al. Among authors: cascio d. Radiol Med. 2008 Jun;113(4):477-85. doi: 10.1007/s11547-008-0282-5. Epub 2008 Jun 6. Radiol Med. 2008. PMID: 18536871 English, Italian.
Computer-Assisted Classification Patterns in Autoimmune Diagnostics: The AIDA Project.
Benammar Elgaaied A, Cascio D, Bruno S, Ciaccio MC, Cipolla M, Fauci A, Morgante R, Taormina V, Gorgi Y, Marrakchi Triki R, Ben Ahmed M, Louzir H, Yalaoui S, Imene S, Issaoui Y, Abidi A, Ammar M, Bedhiafi W, Ben Fraj O, Bouhaha R, Hamdi K, Soumaya K, Neili B, Asma G, Lucchese M, Catanzaro M, Barbara V, Brusca I, Fregapane M, Amato G, Friscia G, Neila T, Turkia S, Youssra H, Rekik R, Bouokez H, Vasile Simone M, Fauci F, Raso G. Benammar Elgaaied A, et al. Among authors: cascio d. Biomed Res Int. 2016;2016:2073076. doi: 10.1155/2016/2073076. Epub 2016 Mar 3. Biomed Res Int. 2016. PMID: 27042658 Free PMC article.
Recognizing the Emergent and Submerged Iceberg of the Celiac Disease: ITAMA Project-Global Strategy Protocol.
Magazzù G, Aquilina S, Barbara C, Bondin R, Brusca I, Bugeja J, Camilleri M, Cascio D, Costa S, Cuzzupè C, Duca A, Fregapane M, Gentile V, Giuliano A, Grifò A, Grima AM, Ieni A, Li Calzi G, Maisano F, Melita G, Pallio S, Panasiti I, Pellegrino S, Romano C, Sorce S, Tabacchi ME, Taormina V, Tegolo D, Tortora A, Valenti C, Vella C, Raso G. Magazzù G, et al. Among authors: cascio d. Pediatr Rep. 2022 Jun 10;14(2):293-311. doi: 10.3390/pediatric14020037. Pediatr Rep. 2022. PMID: 35736659 Free PMC article.
Room-temperature X-ray response of cadmium-zinc-telluride pixel detectors grown by the vertical Bridgman technique.
Abbene L, Principato F, Gerardi G, Buttacavoli A, Cascio D, Bettelli M, Amadè NS, Seller P, Veale MC, Fox O, Sawhney K, Zanettini S, Tomarchio E, Zappettini A. Abbene L, et al. Among authors: cascio d. J Synchrotron Radiat. 2020 Mar 1;27(Pt 2):319-328. doi: 10.1107/S1600577519015996. Epub 2020 Jan 27. J Synchrotron Radiat. 2020. PMID: 32153270
Structure-based design of nanobodies that inhibit seeding of Alzheimer's patient-extracted tau fibrils.
Abskharon R, Pan H, Sawaya MR, Seidler PM, Olivares EJ, Chen Y, Murray KA, Zhang J, Lantz C, Bentzel M, Boyer DR, Cascio D, Nguyen BA, Hou K, Cheng X, Pardon E, Williams CK, Nana AL, Vinters HV, Spina S, Grinberg LT, Seeley WW, Steyaert J, Glabe CG, Ogorzalek Loo RR, Loo JA, Eisenberg DS. Abskharon R, et al. Among authors: cascio d. Proc Natl Acad Sci U S A. 2023 Oct 10;120(41):e2300258120. doi: 10.1073/pnas.2300258120. Epub 2023 Oct 6. Proc Natl Acad Sci U S A. 2023. PMID: 37801475 Free PMC article.
Cryo-EM structure determination of small therapeutic protein targets at 3 Å-resolution using a rigid imaging scaffold.
Castells-Graells R, Meador K, Arbing MA, Sawaya MR, Gee M, Cascio D, Gleave E, Debreczeni JÉ, Breed J, Leopold K, Patel A, Jahagirdar D, Lyons B, Subramaniam S, Phillips C, Yeates TO. Castells-Graells R, et al. Among authors: cascio d. Proc Natl Acad Sci U S A. 2023 Sep 12;120(37):e2305494120. doi: 10.1073/pnas.2305494120. Epub 2023 Sep 5. Proc Natl Acad Sci U S A. 2023. PMID: 37669364 Free PMC article.
Low complexity domains of the nucleocapsid protein of SARS-CoV-2 form amyloid fibrils.
Tayeb-Fligelman E, Bowler JT, Tai CE, Sawaya MR, Jiang YX, Garcia G Jr, Griner SL, Cheng X, Salwinski L, Lutter L, Seidler PM, Lu J, Rosenberg GM, Hou K, Abskharon R, Pan H, Zee CT, Boyer DR, Li Y, Anderson DH, Murray KA, Falcon G, Cascio D, Saelices L, Damoiseaux R, Arumugaswami V, Guo F, Eisenberg DS. Tayeb-Fligelman E, et al. Among authors: cascio d. Nat Commun. 2023 Apr 25;14(1):2379. doi: 10.1038/s41467-023-37865-3. Nat Commun. 2023. PMID: 37185252 Free PMC article.
De novo determination of mosquitocidal Cry11Aa and Cry11Ba structures from naturally-occurring nanocrystals.
Tetreau G, Sawaya MR, De Zitter E, Andreeva EA, Banneville AS, Schibrowsky NA, Coquelle N, Brewster AS, Grünbein ML, Kovacs GN, Hunter MS, Kloos M, Sierra RG, Schiro G, Qiao P, Stricker M, Bideshi D, Young ID, Zala N, Engilberge S, Gorel A, Signor L, Teulon JM, Hilpert M, Foucar L, Bielecki J, Bean R, de Wijn R, Sato T, Kirkwood H, Letrun R, Batyuk A, Snigireva I, Fenel D, Schubert R, Canfield EJ, Alba MM, Laporte F, Després L, Bacia M, Roux A, Chapelle C, Riobé F, Maury O, Ling WL, Boutet S, Mancuso A, Gutsche I, Girard E, Barends TRM, Pellequer JL, Park HW, Laganowsky AD, Rodriguez J, Burghammer M, Shoeman RL, Doak RB, Weik M, Sauter NK, Federici B, Cascio D, Schlichting I, Colletier JP. Tetreau G, et al. Among authors: cascio d. Nat Commun. 2022 Jul 28;13(1):4376. doi: 10.1038/s41467-022-31746-x. Nat Commun. 2022. PMID: 35902572 Free PMC article.
Inhibition of amyloid formation of the Nucleoprotein of SARS-CoV-2.
Tayeb-Fligelman E, Cheng X, Tai C, Bowler JT, Griner S, Sawaya MR, Seidler PM, Jiang YX, Lu J, Rosenberg GM, Salwinski L, Abskharon R, Zee CT, Hou K, Li Y, Boyer DR, Murray KA, Falcon G, Anderson DH, Cascio D, Saelices L, Damoiseaux R, Guo F, Eisenberg DS. Tayeb-Fligelman E, et al. Among authors: cascio d. bioRxiv [Preprint]. 2021 Mar 18:2021.03.05.434000. doi: 10.1101/2021.03.05.434000. bioRxiv. 2021. PMID: 33688654 Free PMC article. Preprint.
Crystal structure of a conformational antibody that binds tau oligomers and inhibits pathological seeding by extracts from donors with Alzheimer's disease.
Abskharon R, Seidler PM, Sawaya MR, Cascio D, Yang TP, Philipp S, Williams CK, Newell KL, Ghetti B, DeTure MA, Dickson DW, Vinters HV, Felgner PL, Nakajima R, Glabe CG, Eisenberg DS. Abskharon R, et al. Among authors: cascio d. J Biol Chem. 2020 Jul 31;295(31):10662-10676. doi: 10.1074/jbc.RA120.013638. Epub 2020 Jun 3. J Biol Chem. 2020. PMID: 32493775 Free PMC article.
Serial femtosecond crystallography on in vivo-grown crystals drives elucidation of mosquitocidal Cyt1Aa bioactivation cascade.
Tetreau G, Banneville AS, Andreeva EA, Brewster AS, Hunter MS, Sierra RG, Teulon JM, Young ID, Burke N, Grünewald TA, Beaudouin J, Snigireva I, Fernandez-Luna MT, Burt A, Park HW, Signor L, Bafna JA, Sadir R, Fenel D, Boeri-Erba E, Bacia M, Zala N, Laporte F, Després L, Weik M, Boutet S, Rosenthal M, Coquelle N, Burghammer M, Cascio D, Sawaya MR, Winterhalter M, Gratton E, Gutsche I, Federici B, Pellequer JL, Sauter NK, Colletier JP. Tetreau G, et al. Among authors: cascio d. Nat Commun. 2020 Mar 2;11(1):1153. doi: 10.1038/s41467-020-14894-w. Nat Commun. 2020. PMID: 32123169 Free PMC article.
Characterization of Reactive Organometallic Species via MicroED.
Jones CG, Asay M, Kim LJ, Kleinsasser JF, Saha A, Fulton TJ, Berkley KR, Cascio D, Malyutin AG, Conley MP, Stoltz BM, Lavallo V, Rodríguez JA, Nelson HM. Jones CG, et al. Among authors: cascio d. ACS Cent Sci. 2019 Sep 25;5(9):1507-1513. doi: 10.1021/acscentsci.9b00403. Epub 2019 Sep 6. ACS Cent Sci. 2019. PMID: 31572777 Free PMC article.
Structure-based inhibitors halt prion-like seeding by Alzheimer's disease-and tauopathy-derived brain tissue samples.
Seidler PM, Boyer DR, Murray KA, Yang TP, Bentzel M, Sawaya MR, Rosenberg G, Cascio D, Williams CK, Newell KL, Ghetti B, DeTure MA, Dickson DW, Vinters HV, Eisenberg DS. Seidler PM, et al. Among authors: cascio d. J Biol Chem. 2019 Nov 1;294(44):16451-16464. doi: 10.1074/jbc.RA119.009688. Epub 2019 Sep 19. J Biol Chem. 2019. PMID: 31537646 Free PMC article.
Protein structural biology using cell-free platform from wheat germ.
Novikova IV, Sharma N, Moser T, Sontag R, Liu Y, Collazo MJ, Cascio D, Shokuhfar T, Hellmann H, Knoblauch M, Evans JE. Novikova IV, et al. Among authors: cascio d. Adv Struct Chem Imaging. 2018;4(1):13. doi: 10.1186/s40679-018-0062-9. Epub 2018 Nov 10. Adv Struct Chem Imaging. 2018. PMID: 30524935 Free PMC article.
203 results