"Clin Proteomics"[ Journal] - Search Results

Year	Number of Results
2006	1
2008	4
2009	1
2010	9
2011	15
2012	14
2013	20
2014	44
2015	29
2016	34
2017	41
2018	43
2019	44
2020	41
2021	32
2022	51
2023	41

1

A large-scale targeted proteomics of serum and tissue shows the utility of classifying high grade and low grade meningioma tumors.

Halder A, Biswas D, Chauhan A, Saha A, Auromahima S, Yadav D, Nissa MU, Iyer G, Parihari S, Sharma G, Epari S, Shetty P, Moiyadi A, Ball GR, Srivastava S. Halder A, et al. Clin Proteomics. 2023 Sep 29;20(1):41. doi: 10.1186/s12014-023-09426-9. Clin Proteomics. 2023. PMID: 37770851 Free PMC article.

2

Development of an ID-LC-MS/MS method using targeted proteomics for quantifying cardiac troponin I in human serum.

Asicioglu M, Oztug M, Karaguler NG. Asicioglu M, et al. Clin Proteomics. 2023 Sep 27;20(1):40. doi: 10.1186/s12014-023-09430-z. Clin Proteomics. 2023. PMID: 37759177 Free PMC article.

3

Identification of potential molecular targets for the treatment of cluster 1 human pheochromocytoma and paraganglioma via comprehensive proteomic characterization.

Vit O, Talacko P, Musil Z, Hartmann I, Pacak K, Petrak J. Vit O, et al. Clin Proteomics. 2023 Sep 25;20(1):39. doi: 10.1186/s12014-023-09428-7. Clin Proteomics. 2023. PMID: 37749499 Free PMC article.

4

Systematic review of type 1 diabetes biomarkers reveals regulation in circulating proteins related to complement, lipid metabolism, and immune response.

Sarkar S, Elliott EC, Henry HR, Ludovico ID, Melchior JT, Frazer-Abel A, Webb-Robertson BJ, Davidson WS, Holers VM, Rewers MJ, Metz TO, Nakayasu ES. Sarkar S, et al. Clin Proteomics. 2023 Sep 21;20(1):38. doi: 10.1186/s12014-023-09429-6. Clin Proteomics. 2023. PMID: 37735622 Free PMC article. Review.

5

Identification and verification of plasma protein biomarkers that accurately identify an ectopic pregnancy.

Beer LA, Yin X, Ding J, Senapati S, Sammel MD, Barnhart KT, Liu Q, Speicher DW, Goldman AR. Beer LA, et al. Clin Proteomics. 2023 Sep 15;20(1):37. doi: 10.1186/s12014-023-09425-w. Clin Proteomics. 2023. PMID: 37715129 Free PMC article.

6

Proteome analysis of CD5-positive diffuse large B cell lymphoma FFPE tissue reveals downregulation of DDX3X, DNAJB1, and B cell receptor signaling pathway proteins including BTK and Immunoglobulins.

Hiratsuka T, Ito S, Sakai R, Yokose T, Endo T, Daigo Y, Miyagi Y, Tsuruyama T. Hiratsuka T, et al. Clin Proteomics. 2023 Sep 13;20(1):36. doi: 10.1186/s12014-023-09422-z. Clin Proteomics. 2023. PMID: 37705009 Free PMC article.

7

New mechanisms and biomarkers of lymph node metastasis in cervical cancer: reflections from plasma proteomics.

Han S, Liu X, Ju S, Mu W, Abulikemu G, Zhen Q, Yang J, Zhang J, Li Y, Liu H, Chen Q, Cui B, Wu S, Zhang Y. Han S, et al. Clin Proteomics. 2023 Sep 9;20(1):35. doi: 10.1186/s12014-023-09427-8. Clin Proteomics. 2023. PMID: 37689639 Free PMC article.

8

Correction to: Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis.

Lee JH, Jung JH, Kim J, Baek WK, Rhee J, Kim TH, Kim SH, Kim KP, Son CN, Kim JS. Lee JH, et al. Clin Proteomics. 2023 Sep 2;20(1):34. doi: 10.1186/s12014-023-09423-y. Clin Proteomics. 2023. PMID: 37660021 Free PMC article. No abstract available.

9

Cerebrospinal fluid camk2a levels at baseline predict long-term progression in multiple sclerosis.

Sohaei D, Thebault S, Avery LM, Batruch I, Lam B, Xu W, Saadeh RS, Scarisbrick IA, Diamandis EP, Prassas I, Freedman MS. Sohaei D, et al. Clin Proteomics. 2023 Aug 29;20(1):33. doi: 10.1186/s12014-023-09418-9. Clin Proteomics. 2023. PMID: 37644477 Free PMC article.

10

Mass spectrometry-based proteomics as an emerging tool in clinical laboratories.

Birhanu AG. Birhanu AG. Clin Proteomics. 2023 Aug 26;20(1):32. doi: 10.1186/s12014-023-09424-x. Clin Proteomics. 2023. PMID: 37633929 Free PMC article. Review.

11

Proteomic analysis of 92 circulating proteins and their effects in cardiometabolic diseases.

Carland C, Png G, Malarstig A, Kho PF, Gustafsson S, Michaelsson K, Lind L, Tsafantakis E, Karaleftheri M, Dedoussis G, Ramisch A, Macdonald-Dunlop E, Klaric L, Joshi PK, Chen Y, Björck HM, Eriksson P, Carrasco-Zanini J, Wheeler E, Suhre K, Gilly A, Zeggini E, Viñuela A, Dermitzakis ET, Wilson JF, Langenberg C, Thareja G, Halama A, Schmidt F; SCALLOP Consortium; Zanetti D, Assimes T. Carland C, et al. Clin Proteomics. 2023 Aug 7;20(1):31. doi: 10.1186/s12014-023-09421-0. Clin Proteomics. 2023. PMID: 37550624 Free PMC article.

12

Identification of SARS-CoV-2 biomarkers in saliva by transcriptomic and proteomics analysis.

Marin LM, Katselis GS, Chumala P, Sanche S, Julseth L, Penz E, Skomro R, Siqueira WL. Marin LM, et al. Clin Proteomics. 2023 Aug 3;20(1):30. doi: 10.1186/s12014-023-09417-w. Clin Proteomics. 2023. PMID: 37537537 Free PMC article.

13

Proteomic analysis identifies subgroups of patients with active systemic lupus erythematosus.

Su KYC, Reynolds JA, Reed R, Da Silva R, Kelsall J, Baricevic-Jones I, Lee D, Whetton AD, Geifman N, McHugh N, Bruce IN; the MASTERPLANS and BILAG-BR consortia. Su KYC, et al. Clin Proteomics. 2023 Jul 29;20(1):29. doi: 10.1186/s12014-023-09420-1. Clin Proteomics. 2023. PMID: 37516862 Free PMC article.

14

Comparative proteomics analysis in different stages of urothelial bladder cancer for identification of potential biomarkers: highlighted role for antioxidant activity.

Tabaei S, Haghshenas MR, Ariafar A, Gilany K, Stensballe A, Farjadian S, Ghaderi A. Tabaei S, et al. Clin Proteomics. 2023 Jul 27;20(1):28. doi: 10.1186/s12014-023-09419-8. Clin Proteomics. 2023. PMID: 37501157 Free PMC article.

15

Associations of circulating proteins with lipoprotein profiles: proteomic analyses from the OmniHeart randomized trial and the Atherosclerosis Risk in Communities (ARIC) Study.

Kim H, Lichtenstein AH, Ganz P, Miller ER 3rd, Coresh J, Appel LJ, Rebholz CM. Kim H, et al. Clin Proteomics. 2023 Jul 3;20(1):27. doi: 10.1186/s12014-023-09416-x. Clin Proteomics. 2023. PMID: 37400771 Free PMC article.

16

Development of a rapid and specific MALDI-TOF mass spectrometric assay for SARS-CoV-2 detection.

Kollhoff L, Kipping M, Rauh M, Ceglarek U, Barka G, Barka F, Sinz A. Kollhoff L, et al. Clin Proteomics. 2023 Jul 1;20(1):26. doi: 10.1186/s12014-023-09415-y. Clin Proteomics. 2023. PMID: 37393264 Free PMC article.

17

VCAM-1 complements CA-125 in detecting recurrent ovarian cancer.

Song J, Sokoll LJ, Zhang Z, Chan DW. Song J, et al. Clin Proteomics. 2023 Jun 25;20(1):25. doi: 10.1186/s12014-023-09414-z. Clin Proteomics. 2023. PMID: 37357306 Free PMC article.

18

Identification of ORM1, vWF, SPARC, and PPBP as immune-related proteins involved in immune thrombocytopenia by quantitative LC-MS/MS.

Yin DM, Yuan D, Sun RJ, Xu HZ, Hun SY, Sui XH, Shan NN. Yin DM, et al. Clin Proteomics. 2023 Jun 24;20(1):24. doi: 10.1186/s12014-023-09413-0. Clin Proteomics. 2023. PMID: 37355563 Free PMC article.

19

Orthogonal proteomics methods warrant the development of Duchenne muscular dystrophy biomarkers.

Johansson C, Hunt H, Signorelli M, Edfors F, Hober A, Svensson AS, Tegel H, Forstström B, Aartsma-Rus A, Niks E, Spitali P, Uhlén M, Szigyarto CA. Johansson C, et al. Clin Proteomics. 2023 Jun 12;20(1):23. doi: 10.1186/s12014-023-09412-1. Clin Proteomics. 2023. PMID: 37308827 Free PMC article.

20

Tailored therapeutic decision of rheumatoid arthritis using proteomic strategies: how to start and when to stop?

Chen SF, Yeh FC, Chen CY, Chang HY. Chen SF, et al. Clin Proteomics. 2023 Jun 10;20(1):22. doi: 10.1186/s12014-023-09411-2. Clin Proteomics. 2023. PMID: 37301840 Free PMC article. Review.

21

Comparative proteomic analysis of glomerular proteins in IgA nephropathy and IgA vasculitis with nephritis.

Kaga H, Matsumura H, Saito A, Saito M, Abe F, Suzuki T, Dohmae N, Odaka M, Komatsuda A, Wakui H, Takahashi N. Kaga H, et al. Clin Proteomics. 2023 May 13;20(1):21. doi: 10.1186/s12014-023-09409-w. Clin Proteomics. 2023. PMID: 37179321 Free PMC article.

22

The rapid detection of procalcitonin in septic serum using immunoaffinity MALDI chips.

Dvorak J, Novakova J, Kraftova L, Studentova V, Matejovic M, Radej J, Karvunidis T, Horak J, Kralovcova M, Hrabak J, Kalaninova Z, Volny M, Novak P, Pompach P. Dvorak J, et al. Clin Proteomics. 2023 May 11;20(1):20. doi: 10.1186/s12014-023-09410-3. Clin Proteomics. 2023. PMID: 37170190 Free PMC article.

23

Proteomic signature associated with chronic kidney disease (CKD) progression identified by data-independent acquisition mass spectrometry.

Ramírez Medina CR, Ali I, Baricevic-Jones I, Odudu A, Saleem MA, Whetton AD, Kalra PA, Geifman N. Ramírez Medina CR, et al. Clin Proteomics. 2023 Apr 20;20(1):19. doi: 10.1186/s12014-023-09405-0. Clin Proteomics. 2023. PMID: 37076799 Free PMC article.

24

Correction to: Phospho-heavy-labeled-spiketide FAIMS stepped-CV DDA (pHASED) provides real-time phosphoproteomics data to aid in cancer drug selection.

Staudt DE, Murray HC, Skerrett-Byrne DA, Smith ND, Jamaluddin MFB, Kahl RGS, Duchatel RJ, Germon ZP, McLachlan T, Jackson ER, Findlay IJ, Kearney PS, Mannan A, McEwen HP, Douglas AM, Nixon B, Verrills NM, Dun MD. Staudt DE, et al. Clin Proteomics. 2023 Apr 8;20(1):16. doi: 10.1186/s12014-023-09406-z. Clin Proteomics. 2023. PMID: 37031204 Free PMC article. No abstract available.

25

Mitochondria and cytochrome components released into the plasma of severe COVID-19 and ICU acute respiratory distress syndrome patients.

Chen ZZ, Johnson L, Trahtemberg U, Baker A, Huq S, Dufresne J, Bowden P, Miao M, Ho JA, Hsu CC, Dos Santos CC, Marshall JG. Chen ZZ, et al. Clin Proteomics. 2023 Apr 8;20(1):17. doi: 10.1186/s12014-023-09394-0. Clin Proteomics. 2023. PMID: 37031181 Free PMC article.

26

Quantitative proteomics analysis in small cell carcinoma of cervix reveals novel therapeutic targets.

Qiu H, Su N, Wang J, Yan S, Li J. Qiu H, et al. Clin Proteomics. 2023 Apr 8;20(1):18. doi: 10.1186/s12014-023-09408-x. Clin Proteomics. 2023. PMID: 37031178 Free PMC article.

27

Label-free quantitative proteomics reveals aberrant expression levels of LRG, C9, FN, A1AT and AGP1 in the plasma of patients with colorectal cancer.

Verathamjamras C, Chantaraamporn J, Sornprachum T, Mutapat P, Chokchaichamnankit D, Mingkwan K, Luevisadpibul V, Srisomsap C, Chutipongtanate S, Svasti J, Champattanachai V. Verathamjamras C, et al. Clin Proteomics. 2023 Apr 6;20(1):15. doi: 10.1186/s12014-023-09407-y. Clin Proteomics. 2023. PMID: 37024778 Free PMC article.

28

An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samples.

Weise DO, Kruk ME, Higgins L, Markowski TW, Jagtap PD, Mehta S, Mickelson A, Parker LL, Wendt CH, Griffin TJ. Weise DO, et al. Clin Proteomics. 2023 Apr 2;20(1):14. doi: 10.1186/s12014-023-09404-1. Clin Proteomics. 2023. PMID: 37005570 Free PMC article.

29

Proteomic characteristics and diagnostic potential of exhaled breath particles in patients with COVID-19.

Hirdman G, Bodén E, Kjellström S, Fraenkel CJ, Olm F, Hallgren O, Lindstedt S. Hirdman G, et al. Clin Proteomics. 2023 Mar 27;20(1):13. doi: 10.1186/s12014-023-09403-2. Clin Proteomics. 2023. PMID: 36967377 Free PMC article.

30

Discovery of novel glioma serum biomarkers by proximity extension assay.

Ghorbani A, Avery LM, Sohaei D, Soosaipillai A, Richer M, Horbinski C, McCortney K, Xu W, Diamandis EP, Prassas I. Ghorbani A, et al. Clin Proteomics. 2023 Mar 24;20(1):12. doi: 10.1186/s12014-023-09400-5. Clin Proteomics. 2023. PMID: 36959545 Free PMC article.

31

Proteomic analysis of sialoliths from calcified, lipid and mixed groups as a source of potential biomarkers of deposit formation in the salivary glands.

Musiał N, Bogucka A, Tretiakow D, Skorek A, Ryl J, Czaplewska P. Musiał N, et al. Clin Proteomics. 2023 Mar 22;20(1):11. doi: 10.1186/s12014-023-09402-3. Clin Proteomics. 2023. PMID: 36949424 Free PMC article.

32

Quantitative proteomics identifies and validates urinary biomarkers of rhabdomyosarcoma in children.

Xu N, Yu Y, Duan C, Wei J, Sun W, Jiang C, Jian B, Cao W, Jia L, Ma X. Xu N, et al. Clin Proteomics. 2023 Mar 14;20(1):10. doi: 10.1186/s12014-023-09401-4. Clin Proteomics. 2023. PMID: 36918772 Free PMC article.

33

Potential biomarker proteins for aspiration pneumonia detected by shotgun proteomics using buccal mucosa samples: a cross-sectional case-control study.

Ogura K, Endo M, Hase T, Negami H, Tsuchiya K, Nishiuchi T, Suzuki T, Ogai K, Sanada H, Okamoto S, Sugama J. Ogura K, et al. Clin Proteomics. 2023 Mar 9;20(1):9. doi: 10.1186/s12014-023-09398-w. Clin Proteomics. 2023. PMID: 36894881 Free PMC article.

34

Proteomic analysis identifies dysregulated proteins and associated molecular pathways in a cohort of gallbladder cancer patients of African ancestry.

Baichan P, Naicker P, Augustine TN, Smith M, Candy G, Devar J, Nweke EE. Baichan P, et al. Clin Proteomics. 2023 Mar 1;20(1):8. doi: 10.1186/s12014-023-09399-9. Clin Proteomics. 2023. PMID: 36855072 Free PMC article.

35

Changes of serum IgG glycosylation patterns in rheumatoid arthritis.

Deng X, Liu X, Zhang Y, Ke D, Yan R, Wang Q, Tian X, Li M, Zeng X, Hu C. Deng X, et al. Clin Proteomics. 2023 Feb 21;20(1):7. doi: 10.1186/s12014-023-09395-z. Clin Proteomics. 2023. PMID: 36810000 Free PMC article.

36

Integrating the serum proteomic and fecal metaproteomic to analyze the impacts of overweight/obesity on IBD: a pilot investigation.

Yan P, Sun Y, Luo J, Liu X, Wu J, Miao Y. Yan P, et al. Clin Proteomics. 2023 Feb 9;20(1):6. doi: 10.1186/s12014-023-09396-y. Clin Proteomics. 2023. PMID: 36759757 Free PMC article.

37

Are the results from a multiplex proteomic assay and a conventional immunoassay for NT-proBNP and GDF-15 comparable?

Skau E, Wagner P, Leppert J, Ärnlöv J, Hedberg P. Skau E, et al. Clin Proteomics. 2023 Jan 24;20(1):5. doi: 10.1186/s12014-023-09393-1. Clin Proteomics. 2023. PMID: 36694116 Free PMC article.

38

The novel biomarkers for assessing clinical benefits of continuous renal replacement therapy in pediatric sepsis: a pilot study.

Cui Y, Feng S, Miao H, Liu T, Shi J, Dou J, Wang C, Zhang Y. Cui Y, et al. Clin Proteomics. 2023 Jan 18;20(1):4. doi: 10.1186/s12014-023-09392-2. Clin Proteomics. 2023. PMID: 36650427 Free PMC article.

39

Combination of automated sample preparation and micro-flow LC-MS for high-throughput plasma proteomics.

Ye X, Cui X, Zhang L, Wu Q, Sui X, He A, Zhang X, Xu R, Tian R. Ye X, et al. Clin Proteomics. 2023 Jan 7;20(1):3. doi: 10.1186/s12014-022-09390-w. Clin Proteomics. 2023. PMID: 36611134 Free PMC article.

40

Investigation on the mechanisms of human sperm DNA damage based on the proteomics analysis by SWATH-MS.

Zhu CH, Wei Y, Chen F, Li F, Zhang SM, Dong NJ, Xue TM, Liu KF, Cui HM, Lu JC. Zhu CH, et al. Clin Proteomics. 2023 Jan 6;20(1):2. doi: 10.1186/s12014-022-09391-9. Clin Proteomics. 2023. PMID: 36609216 Free PMC article.

41

A proteomic profile of the healthy human placenta.

Manna S, Scheel J, Noone A, McElwain CJ, Scaife C, Gupta S, English J, McCarthy C, McCarthy FP. Manna S, et al. Clin Proteomics. 2023 Jan 2;20(1):1. doi: 10.1186/s12014-022-09388-4. Clin Proteomics. 2023. PMID: 36593452 Free PMC article. Review.

42

Novel plasma protein biomarkers from critically ill sepsis patients.

Van Nynatten LR, Slessarev M, Martin CM, Leligdowicz A, Miller MR, Patel MA, Daley M, Patterson EK, Cepinskas G, Fraser DD. Van Nynatten LR, et al. Clin Proteomics. 2022 Dec 27;19(1):50. doi: 10.1186/s12014-022-09389-3. Clin Proteomics. 2022. PMID: 36572854 Free PMC article.

43

LC-MS/MS based metabolomics and proteomics reveal candidate biomarkers and molecular mechanism of early IgA nephropathy.

Zhang D, Li Y, Liang M, Liang Y, Tian J, He Q, Yang B, Jin J, Zhu W. Zhang D, et al. Clin Proteomics. 2022 Dec 27;19(1):51. doi: 10.1186/s12014-022-09387-5. Clin Proteomics. 2022. PMID: 36572849 Free PMC article.

44

Alterations in the pH of pancreatic juice are associated with chymotrypsin C inactivation and lithostathine precipitation in chronic pancreatitis patients: a proteomic approach.

Goudshelwar R, Adimoolam BM, Lakhtakia S, Thota JR, Sripadi P, Rupula K, Reddy DN, Sasikala M. Goudshelwar R, et al. Clin Proteomics. 2022 Dec 26;19(1):49. doi: 10.1186/s12014-022-09384-8. Clin Proteomics. 2022. PMID: 36572850 Free PMC article.

45

Phospho-heavy-labeled-spiketide FAIMS stepped-CV DDA (pHASED) provides real-time phosphoproteomics data to aid in cancer drug selection.

Staudt DE, Murray HC, Skerrett-Byrne DA, Smith ND, Jamaluddin MFB, Kahl RGS, Duchatel RJ, Germon ZP, McLachlan T, Jackson ER, Findlay IJ, Kearney PS, Mannan A, McEwen HP, Douglas AM, Nixon B, Verrills NM, Dun MD. Staudt DE, et al. Clin Proteomics. 2022 Dec 19;19(1):48. doi: 10.1186/s12014-022-09385-7. Clin Proteomics. 2022. PMID: 36536316 Free PMC article.

46

Decreased histidine-rich glycoprotein and increased complement C4-B protein levels in follicular fluid predict the IVF outcomes of recurrent spontaneous abortion.

Sun X, Jin J, Zhang YL, Ma Y, Zhang S, Tong X. Sun X, et al. Clin Proteomics. 2022 Dec 17;19(1):47. doi: 10.1186/s12014-022-09383-9. Clin Proteomics. 2022. PMID: 36528562 Free PMC article.

47

Proteomic profiling of end-stage COVID-19 lung biopsies.

Gindlhuber J, Tomin T, Wiesenhofer F, Zacharias M, Liesinger L, Demichev V, Kratochwill K, Gorkiewicz G, Schittmayer M, Birner-Gruenberger R. Gindlhuber J, et al. Clin Proteomics. 2022 Dec 17;19(1):46. doi: 10.1186/s12014-022-09386-6. Clin Proteomics. 2022. PMID: 36526981 Free PMC article.

48

Proteomics profiles of blood glucose-related proteins involved in a Chinese longevity cohort.

Zhang R, Liu F, Ye S, Du X, Ma L, Cao H, Wang Z, Li C. Zhang R, et al. Clin Proteomics. 2022 Dec 3;19(1):45. doi: 10.1186/s12014-022-09382-w. Clin Proteomics. 2022. PMID: 36463101 Free PMC article.

49

Quantitative proteomics identified circulating biomarkers in lung adenocarcinoma diagnosis.

Chen H, Lai X, Zhu Y, Huang H, Zeng L, Zhang L. Chen H, et al. Clin Proteomics. 2022 Nov 21;19(1):44. doi: 10.1186/s12014-022-09381-x. Clin Proteomics. 2022. PMID: 36404333 Free PMC article.

50

Glycoproteomics revealed novel N-glycosylation biomarkers for early diagnosis of lung adenocarcinoma cancers.

Fang K, Long Q, Liao Z, Zhang C, Jiang Z. Fang K, et al. Clin Proteomics. 2022 Nov 19;19(1):43. doi: 10.1186/s12014-022-09376-8. Clin Proteomics. 2022. PMID: 36401165 Free PMC article.

51

Functional and quantitative evaluation of the 20S proteasome in serum and intracellular in145 moroccan patients with hematologic malignancies.

Filali H, El Yaagoubi OM, Ayoub Lahmadi, Quessar A, Antri SE, Samaki H, Aboudkhil S. Filali H, et al. Clin Proteomics. 2022 Nov 15;19(1):41. doi: 10.1186/s12014-022-09375-9. Clin Proteomics. 2022. PMID: 36380291 Free PMC article.

52

Comparison of intact protein and digested peptide techniques for high throughput proteotyping of ApoE.

Maus A, Figdore D, Milosevic D, Algeciras-Schimnich A, Bornhorst J. Maus A, et al. Clin Proteomics. 2022 Nov 15;19(1):42. doi: 10.1186/s12014-022-09379-5. Clin Proteomics. 2022. PMID: 36380282 Free PMC article.

53

Correction: The dynamic changes and sex differences of 147 immune-related proteins during acute COVID-19 in 580 individuals.

Butler-Laporte G, Gonzalez-Kozlova E, Su CY, Zhou S, Nakanishi T, Brunet-Ratnasingham E, Morrison D, Laurent L, Aflalo J, Aflalo M, Henry D, Chen Y, Carrasco-Zanini J, Farjoun Y, Pietzner M, Kimchi N, Afrasiabi Z, Rezk N, Bouab M, Petitjean L, Guzman C, Xue X, Tselios C, Vulesevic B, Adeleye O, Abdullah T, Almamlouk N, Moussa Y, DeLuca C, Duggan N, Schurr E, Brassard N, Durand M, Del Valle DM, Thompson R, Cedillo MA, Schadt E, Nie K, Simons NW, Mouskas K, Zaki N, Patel M, Xie H, Harris J, Marvin R, Cheng E, Tuballes K, Argueta K, Scott I; Mount Sinai COVID-19 Biobank Team; Greenwood CMT, Paterson C, Hinterberg M, Langenberg C, Forgetta V, Mooser V, Marron T, Beckmann ND, Kenigsberg E, Charney AW, Kim-Schulze S, Merad M, Kaufmann DE, Gnjatic S, Richards JB. Butler-Laporte G, et al. Clin Proteomics. 2022 Nov 15;19(1):40. doi: 10.1186/s12014-022-09378-6. Clin Proteomics. 2022. PMID: 36376796 Free PMC article. No abstract available.

54

Determination of temporal reproducibility and variability of cancer biomarkers in serum and EDTA plasma samples using a proximity extension assay.

Christensen TD, Maag E, Madsen K, Lindgaard SC, Nielsen DL, Johansen JS. Christensen TD, et al. Clin Proteomics. 2022 Nov 15;19(1):39. doi: 10.1186/s12014-022-09380-y. Clin Proteomics. 2022. PMID: 36376783 Free PMC article.

55

Proteomic analysis identifies a signature of disease severity in the plasma of COVID-19 pneumonia patients associated to neutrophil, platelet and complement activation.

Ciccosanti F, Antonioli M, Sacchi A, Notari S, Farina A, Beccacece A, Fusto M, Vergori A, D'Offizi G, Taglietti F, Antinori A, Nicastri E, Marchioni L, Palmieri F, Ippolito G, Piacentini M, Agrati C, Fimia GM. Ciccosanti F, et al. Clin Proteomics. 2022 Nov 8;19(1):38. doi: 10.1186/s12014-022-09377-7. Clin Proteomics. 2022. PMID: 36348270 Free PMC article.

56

Identification of circular RNA BTBD7_hsa_circ_0000563 as a novel biomarker for coronary artery disease and the functional discovery of BTBD7_hsa_circ_0000563 based on peripheral blood mononuclear cells: a case control study.

Zhou H, Gan X, He S, Wang Y, Zhang S, Chen J, Zhou Y, Hou C, Hua L, Zhang Q, Jia E. Zhou H, et al. Clin Proteomics. 2022 Nov 3;19(1):37. doi: 10.1186/s12014-022-09374-w. Clin Proteomics. 2022. PMID: 36329387 Free PMC article.

57

Neoplastic cell enrichment of tumor tissues using coring and laser microdissection for proteomic and genomic analyses of pancreatic ductal adenocarcinoma.

Li QK, Hu Y, Chen L, Schnaubelt M, Cui Zhou D, Li Y, Lu RJ, Thiagarajan M, Hostetter G, Newton CJ, Jewell SD, Omenn G, Robles AI, Mesri M, Bathe OF, Zhang B, Ding L, Hruban RH, Chan DW, Zhang H. Li QK, et al. Clin Proteomics. 2022 Oct 20;19(1):36. doi: 10.1186/s12014-022-09373-x. Clin Proteomics. 2022. PMID: 36266629 Free PMC article.

58

Proteomic alterations associated with residual disease in neoadjuvant chemotherapy treated ovarian cancer tissues.

Penick ER, Bateman NW, Rojas C, Magana C, Conrads K, Zhou M, Hood BL, Wang G, Parikh N, Huang Y, Darcy KM, Casablanca Y, Mhawech-Fauceglia P, Conrads TP, Maxwell GL. Penick ER, et al. Clin Proteomics. 2022 Oct 4;19(1):35. doi: 10.1186/s12014-022-09372-y. Clin Proteomics. 2022. PMID: 36195845 Free PMC article.

59

The dynamic changes and sex differences of 147 immune-related proteins during acute COVID-19 in 580 individuals.

Butler-Laporte G, Gonzalez-Kozlova E, Su CY, Zhou S, Nakanishi T, Brunet-Ratnasingham E, Morrison D, Laurent L, Afilalo J, Afilalo M, Henry D, Chen Y, Carrasco-Zanini J, Farjoun Y, Pietzner M, Kimchi N, Afrasiabi Z, Rezk N, Bouab M, Petitjean L, Guzman C, Xue X, Tselios C, Vulesevic B, Adeleye O, Abdullah T, Almamlouk N, Moussa Y, DeLuca C, Duggan N, Schurr E, Brassard N, Durand M, Del Valle DM, Thompson R, Cedillo MA, Schadt E, Nie K, Simons NW, Mouskas K, Zaki N, Patel M, Xie H, Harris J, Marvin R, Cheng E, Tuballes K, Argueta K, Scott I; Mount Sinai COVID-19 Biobank Team; Greenwood CMT, Paterson C, Hinterberg M, Langenberg C, Forgetta V, Mooser V, Marron T, Beckmann N, Kenigsberg E, Charney AW, Kim-Schulze S, Merad M, Kaufmann DE, Gnjatic S, Richards JB. Butler-Laporte G, et al. Clin Proteomics. 2022 Sep 28;19(1):34. doi: 10.1186/s12014-022-09371-z. Clin Proteomics. 2022. PMID: 36171541 Free PMC article.

60

Proteomics-based evaluation of the mechanism underlying vascular injury via DNA interstrand crosslinks, glutathione perturbation, mitogen-activated protein kinase, and Wnt and ErbB signaling pathways induced by crotonaldehyde.

Xie MZ, Liu JL, Gao QZ, Bo DY, Wang L, Zhou XC, Zhao MM, Zhang YC, Zhang YJ, Zhao GA, Jiao LY. Xie MZ, et al. Clin Proteomics. 2022 Aug 24;19(1):33. doi: 10.1186/s12014-022-09369-7. Clin Proteomics. 2022. PMID: 36002804 Free PMC article.

61

Serum proteomics of severe fever with thrombocytopenia syndrome patients.

Lee SY, Yun SH, Lee H, Lee YG, Seo G, Kim NH, Park EC, Lee CS, Kim SI. Lee SY, et al. Clin Proteomics. 2022 Aug 13;19(1):32. doi: 10.1186/s12014-022-09368-8. Clin Proteomics. 2022. PMID: 35964007 Free PMC article.

62

Integration of protein context improves protein-based COVID-19 patient stratification.

Gao J, He J, Zhang F, Xiao Q, Cai X, Yi X, Zheng S, Zhang Y, Wang D, Zhu G, Wang J, Shen B, Ralser M, Guo T, Zhu Y. Gao J, et al. Clin Proteomics. 2022 Aug 11;19(1):31. doi: 10.1186/s12014-022-09370-0. Clin Proteomics. 2022. PMID: 35953823 Free PMC article.

63

Proteomic and phosphoproteomic measurements enhance ability to predict ex vivo drug response in AML.

Gosline SJC, Tognon C, Nestor M, Joshi S, Modak R, Damnernsawad A, Posso C, Moon J, Hansen JR, Hutchinson-Bunch C, Pino JC, Gritsenko MA, Weitz KK, Traer E, Tyner J, Druker B, Agarwal A, Piehowski P, McDermott JE, Rodland K. Gosline SJC, et al. Clin Proteomics. 2022 Jul 27;19(1):30. doi: 10.1186/s12014-022-09367-9. Clin Proteomics. 2022. PMID: 35896960 Free PMC article.

64

Correction to: A novel non‑invasive method allowing for discovery of pathologically relevant proteins from small airways.

Östling J, Van Geest M, Olsson HK, Dahlen SE, Viklund E, Gustafsson PM, Mirgorodskaya E, Olin AC. Östling J, et al. Clin Proteomics. 2022 Jul 18;19(1):29. doi: 10.1186/s12014-022-09363-z. Clin Proteomics. 2022. PMID: 35843940 Free PMC article. No abstract available.

65

Proteomics-based diagnostic peptide discovery for severe fever with thrombocytopenia syndrome virus in patients.

Lee SY, Lee H, Yun SH, Park EC, Seo G, Kim HY, Jun S, Kim NH, Tark D, Lee JY, Lee CS, Kim SI. Lee SY, et al. Clin Proteomics. 2022 Jul 16;19(1):28. doi: 10.1186/s12014-022-09366-w. Clin Proteomics. 2022. PMID: 35842602 Free PMC article.

66

Proteomic analysis of low- and high-grade human colon adenocarcinoma tissues and tissue-derived primary cell lines reveals unique biological functions of tumours and new protein biomarker candidates.

Munro MJ, Wickremesekera SK, Tan ST, Peng L. Munro MJ, et al. Clin Proteomics. 2022 Jul 16;19(1):27. doi: 10.1186/s12014-022-09364-y. Clin Proteomics. 2022. PMID: 35842572 Free PMC article.

67

Comparative proteomic analysis of glomerular proteins in primary and bucillamine-induced membranous nephropathy.

Kaga H, Matsumura H, Suzuki T, Dohmae N, Odaka M, Komatsuda A, Takahashi N, Wakui H. Kaga H, et al. Clin Proteomics. 2022 Jul 14;19(1):26. doi: 10.1186/s12014-022-09365-x. Clin Proteomics. 2022. PMID: 35836124 Free PMC article.

68

Circulating proteins as predictive and prognostic biomarkers in breast cancer.

Veyssière H, Bidet Y, Penault-Llorca F, Radosevic-Robin N, Durando X. Veyssière H, et al. Clin Proteomics. 2022 Jul 11;19(1):25. doi: 10.1186/s12014-022-09362-0. Clin Proteomics. 2022. PMID: 35818030 Free PMC article. Review.

69

Optimized data-independent acquisition approach for proteomic analysis at single-cell level.

Wang Y, Lih TM, Chen L, Xu Y, Kuczler MD, Cao L, Pienta KJ, Amend SR, Zhang H. Wang Y, et al. Clin Proteomics. 2022 Jul 9;19(1):24. doi: 10.1186/s12014-022-09359-9. Clin Proteomics. 2022. PMID: 35810282 Free PMC article.

70

Quantitative proteomics reveals protein dysregulation during T cell activation in multiple sclerosis patients compared to healthy controls.

Cappelletti C, Eriksson A, Brorson IS, Leikfoss IS, Kråbøl O, Høgestøl EA, Vitelli V, Mjaavatten O, Harbo HF, Berven F, Bos SD, Berge T. Cappelletti C, et al. Clin Proteomics. 2022 Jul 5;19(1):23. doi: 10.1186/s12014-022-09361-1. Clin Proteomics. 2022. PMID: 35790914 Free PMC article.

71

Many kinds of oxidized proteins are present more in the urine of the elderly.

Liu Y, Pan X, Bao Y, Wei L, Gao Y. Liu Y, et al. Clin Proteomics. 2022 Jun 22;19(1):22. doi: 10.1186/s12014-022-09360-2. Clin Proteomics. 2022. PMID: 35733114 Free PMC article.

72

Label-free quantitative proteomic analysis of serum exosomes from patients of renal anemia: The Good and the Bad of Roxadustat.

You X, Guo B, Wang Z, Ma H, Zhang X. You X, et al. Clin Proteomics. 2022 Jun 11;19(1):21. doi: 10.1186/s12014-022-09358-w. Clin Proteomics. 2022. PMID: 35690731 Free PMC article.

73

A novel non-invasive method allowing for discovery of pathologically relevant proteins from small airways.

Östling J, Van Geest M, Olsson HK, Dahlen SE, Viklund E, Gustafsson PM, Mirgorodskaya E, Olin AC. Östling J, et al. Clin Proteomics. 2022 Jun 6;19(1):20. doi: 10.1186/s12014-022-09348-y. Clin Proteomics. 2022. PMID: 35668386 Free PMC article.

74

Proteomic alteration of endometrial tissues during secretion in polycystic ovary syndrome may affect endometrial receptivity.

Li J, Jiang X, Li C, Che H, Ling L, Wei Z. Li J, et al. Clin Proteomics. 2022 May 28;19(1):19. doi: 10.1186/s12014-022-09353-1. Clin Proteomics. 2022. PMID: 35643455 Free PMC article.

75

Serum proteomics unveil characteristic protein diagnostic biomarkers and signaling pathways in patients with esophageal squamous cell carcinoma.

Liu W, Wang Q, Chang J, Bhetuwal A, Bhattarai N, Zhang F, Tang J. Liu W, et al. Clin Proteomics. 2022 May 24;19(1):18. doi: 10.1186/s12014-022-09357-x. Clin Proteomics. 2022. PMID: 35610567 Free PMC article.

76

Maternal serum CFHR4 protein as a potential non-invasive marker of ventricular septal defects in offspring: evidence from a comparative proteomics study.

He J, Xie L, Yu L, Liu L, Xu H, Wang T, Gao Y, Wang X, Duan Y, Liu H, Dai L. He J, et al. Clin Proteomics. 2022 May 19;19(1):17. doi: 10.1186/s12014-022-09356-y. Clin Proteomics. 2022. PMID: 35590261 Free PMC article.

77

Airway fibrin formation cascade in allergic asthma exacerbation: implications for inflammation and remodeling.

Zhu Y, Esnault S, Ge Y, Jarjour NN, Brasier AR. Zhu Y, et al. Clin Proteomics. 2022 May 19;19(1):15. doi: 10.1186/s12014-022-09351-3. Clin Proteomics. 2022. PMID: 35590254 Free PMC article.

78

¹³C¹⁵N: glucagon-based novel isotope dilution mass spectrometry method for measurement of glucagon metabolism in humans.

Renuse S, Benson LM, Vanderboom PM, Ruchi FNU, Yadav YR, Johnson KL, Brown BC, Peterson JA, Basu R, McCormick DJ, Pandey A, Basu A. Renuse S, et al. Clin Proteomics. 2022 May 19;19(1):16. doi: 10.1186/s12014-022-09344-2. Clin Proteomics. 2022. PMID: 35590248 Free PMC article.

79

Transcriptome profiling and proteomic validation reveals targets of the androgen receptor signaling in the BT-474 breast cancer cell line.

Vasiliou SK, Filippou PS, Clotet-Freixas S, Soosaipillai A, Batruch I, Viktor Tsianos F, Konvalinka A, Diamandis EP. Vasiliou SK, et al. Clin Proteomics. 2022 May 14;19(1):14. doi: 10.1186/s12014-022-09352-2. Clin Proteomics. 2022. PMID: 35568821 Free PMC article.

80

Optimized sample preparation and data analysis for TMT proteomic analysis of cerebrospinal fluid applied to the identification of Alzheimer's disease biomarkers.

Weiner S, Sauer M, Visser PJ, Tijms BM, Vorontsov E, Blennow K, Zetterberg H, Gobom J. Weiner S, et al. Clin Proteomics. 2022 May 14;19(1):13. doi: 10.1186/s12014-022-09354-0. Clin Proteomics. 2022. PMID: 35568819 Free PMC article.

81

Label-free LC-MS/MS proteomics analyses reveal proteomic changes in oxidative stress and the SOD antioxidant strategy in TM cells.

Li Q, Zhang L, Xu Y. Li Q, et al. Clin Proteomics. 2022 May 14;19(1):12. doi: 10.1186/s12014-022-09350-4. Clin Proteomics. 2022. PMID: 35562675 Free PMC article.

82

Correction: A SISCAPA-based approach for detection of SARS-CoV-2 viral antigens from clinical samples.

Mangalaparthi KK, Chavan S, Madugundu AK, Renuse S, Vanderboom PM, Maus AD, Kemp J, Kipp BR, Grebe SK, Singh RJ, Pandey A. Mangalaparthi KK, et al. Clin Proteomics. 2022 May 4;19(1):11. doi: 10.1186/s12014-022-09355-z. Clin Proteomics. 2022. PMID: 35508993 Free PMC article. No abstract available.

83

Systematic evaluation and optimization of protein extraction parameters in diagnostic FFPE specimens.

Dressler FF, Schoenfeld J, Revyakina O, Vogele D, Kiefer S, Kirfel J, Gemoll T, Perner S. Dressler FF, et al. Clin Proteomics. 2022 May 2;19(1):10. doi: 10.1186/s12014-022-09346-0. Clin Proteomics. 2022. PMID: 35501693 Free PMC article.

84

Use of MS-GUIDE for identification of protein biomarkers for risk stratification of patients with prostate cancer.

Goetze S, Schüffler P, Athanasiou A, Koetemann A, Poyet C, Fankhauser CD, Wild PJ, Schiess R, Wollscheid B. Goetze S, et al. Clin Proteomics. 2022 Apr 27;19(1):9. doi: 10.1186/s12014-022-09349-x. Clin Proteomics. 2022. PMID: 35477343 Free PMC article.

85

Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework.

Föll MC, Volkmann V, Enderle-Ammour K, Timme S, Wilhelm K, Guo D, Vitek O, Bronsert P, Schilling O. Föll MC, et al. Clin Proteomics. 2022 Apr 19;19(1):8. doi: 10.1186/s12014-022-09347-z. Clin Proteomics. 2022. PMID: 35439943 Free PMC article.

86

Data-independent acquisition mass spectrometry in severe rheumatic heart disease (RHD) identifies a proteomic signature showing ongoing inflammation and effectively classifying RHD cases.

Salie MT, Yang J, Ramírez Medina CR, Zühlke LJ, Chishala C, Ntsekhe M, Gitura B, Ogendo S, Okello E, Lwabi P, Musuku J, Mtaja A, Hugo-Hamman C, El-Sayed A, Damasceno A, Mocumbi A, Bode-Thomas F, Yilgwan C, Amusa GA, Nkereuwem E, Shaboodien G, Da Silva R, Lee DCH, Frain S, Geifman N, Whetton AD, Keavney B, Engel ME; RHDGen Network Consortium. Salie MT, et al. Clin Proteomics. 2022 Mar 22;19(1):7. doi: 10.1186/s12014-022-09345-1. Clin Proteomics. 2022. PMID: 35317720 Free PMC article.

87

Integrative omics reveals subtle molecular perturbations following ischemic conditioning in a porcine kidney transplant model.

O'Brien DP, Thorne AM, Huang H, Pappalardo E, Yao X, Thyrrestrup PS, Ravlo K, Secher N, Norregaard R, Ploeg RJ, Jespersen B, Kessler BM. O'Brien DP, et al. Clin Proteomics. 2022 Feb 14;19(1):6. doi: 10.1186/s12014-022-09343-3. Clin Proteomics. 2022. PMID: 35164671 Free PMC article.

88

Quantitative proteomic analysis of serum-purified exosomes identifies putative pre-eclampsia-associated biomarkers.

Navajas R, Ramos-Fernandez A, Herraiz I, Galindo A, Bartha JL, Corrales F, Paradela A. Navajas R, et al. Clin Proteomics. 2022 Feb 10;19(1):5. doi: 10.1186/s12014-022-09342-4. Clin Proteomics. 2022. PMID: 35144530 Free PMC article.

89

Secreted protein markers in oral squamous cell carcinoma (OSCC).

Mumtaz M, Bijnsdorp IV, Böttger F, Piersma SR, Pham TV, Mumtaz S, Brakenhoff RH, Akhtar MW, Jimenez CR. Mumtaz M, et al. Clin Proteomics. 2022 Feb 8;19(1):4. doi: 10.1186/s12014-022-09341-5. Clin Proteomics. 2022. PMID: 35130834 Free PMC article.

90

Identification of biomarkers of chronic kidney disease among kidney-derived proteins.

Higashisaka K, Takeya S, Kamada H, Obana M, Maeda M, Kabayama M, Yamamoto K, Ishida N, Isaka R, Tsujino H, Nagano K, Tomiyama N, Rakugi H, Fujio Y, Kamide K, Tsutsumi Y. Higashisaka K, et al. Clin Proteomics. 2022 Jan 11;19(1):3. doi: 10.1186/s12014-021-09340-y. Clin Proteomics. 2022. PMID: 35016606 Free PMC article.

91

Circulating microvesicles and exosomes in small cell lung cancer by quantitative proteomics.

Pedersen S, Jensen KP, Honoré B, Kristensen SR, Pedersen CH, Szejniuk WM, Maltesen RG, Falkmer U. Pedersen S, et al. Clin Proteomics. 2022 Jan 7;19(1):2. doi: 10.1186/s12014-021-09339-5. Clin Proteomics. 2022. PMID: 34996345 Free PMC article.

92

Uncomplicated Plasmodium vivax malaria: mapping the proteome from circulating platelets.

Fernández D, Segura C, Arman M, McGill S, Burchmore R, Lopera-Mesa T. Fernández D, et al. Clin Proteomics. 2022 Jan 5;19(1):1. doi: 10.1186/s12014-021-09337-7. Clin Proteomics. 2022. PMID: 34991449 Free PMC article.

93

Urine proteomics identifies biomarkers for diabetic kidney disease at different stages.

Fan G, Gong T, Lin Y, Wang J, Sun L, Wei H, Yang X, Liu Z, Li X, Zhao L, Song L, He J, Liu H, Li X, Liu L, Li A, Lu Q, Zou D, Wen J, Xia Y, Wu L, Huang H, Zhang Y, Xie W, Huang J, Luo L, Wu L, He L, Liang Q, Chen Q, Chen G, Bai M, Qin J, Ni X, Tang X, Wang Y. Fan G, et al. Clin Proteomics. 2021 Dec 29;18(1):32. doi: 10.1186/s12014-021-09338-6. Clin Proteomics. 2021. PMID: 34963468 Free PMC article.

94

Integration of transcriptome and proteome profiles in placenta accreta reveals trophoblast over-migration as the underlying pathogenesis.

Li N, Hou R, Liu C, Yang T, Qiao C, Wei J. Li N, et al. Clin Proteomics. 2021 Dec 29;18(1):31. doi: 10.1186/s12014-021-09336-8. Clin Proteomics. 2021. PMID: 34963445 Free PMC article.

95

Proteomics and functional study reveal kallikrein-6 enhances communicating hydrocephalus.

Yuan L, Zou D, Yang X, Chen X, Lu Y, Zhang A, Zhang P, Wei F. Yuan L, et al. Clin Proteomics. 2021 Dec 16;18(1):30. doi: 10.1186/s12014-021-09335-9. Clin Proteomics. 2021. PMID: 34915845 Free PMC article.

96

OmicsOne: associate omics data with phenotypes in one-click.

Zhang H, Ao M, Boja A, Schnaubelt M, Hu Y. Zhang H, et al. Clin Proteomics. 2021 Dec 11;18(1):29. doi: 10.1186/s12014-021-09334-w. Clin Proteomics. 2021. PMID: 34895137 Free PMC article.

97

A validated analysis pipeline for mass spectrometry-based vitreous proteomics: new insights into proliferative diabetic retinopathy.

Weber SR, Zhao Y, Ma J, Gates C, da Veiga Leprevost F, Basrur V, Nesvizhskii AI, Gardner TW, Sundstrom JM. Weber SR, et al. Clin Proteomics. 2021 Dec 3;18(1):28. doi: 10.1186/s12014-021-09328-8. Clin Proteomics. 2021. PMID: 34861815 Free PMC article.

98

Combined proteomic/transcriptomic signature of recurrence post-liver transplantation for hepatocellular carcinoma beyond Milan.

Bhat M, Clotet-Freixas S, Baciu C, Pasini E, Hammad A, Ivanics T, Reid S, Azhie A, Angeli M, Ghanekar A, Fischer S, Sapisochin G, Konvalinka A. Bhat M, et al. Clin Proteomics. 2021 Nov 18;18(1):27. doi: 10.1186/s12014-021-09333-x. Clin Proteomics. 2021. PMID: 34794390 Free PMC article.

99

Analytical validation of a multi-biomarker algorithmic test for prediction of progressive kidney function decline in patients with early-stage kidney disease.

Connolly P, Stapleton S, Mosoyan G, Fligelman I, Tonar YC, Fleming F, Donovan MJ. Connolly P, et al. Clin Proteomics. 2021 Nov 17;18(1):26. doi: 10.1186/s12014-021-09332-y. Clin Proteomics. 2021. PMID: 34789168 Free PMC article.

100

A SISCAPA-based approach for detection of SARS-CoV-2 viral antigens from clinical samples.

Mangalaparthi KK, Chavan S, Madugundu AK, Renuse S, Vanderboom PM, Maus AD, Kemp J, Kipp BR, Grebe SK, Singh RJ, Pandey A. Mangalaparthi KK, et al. Clin Proteomics. 2021 Oct 22;18(1):25. doi: 10.1186/s12014-021-09331-z. Clin Proteomics. 2021. PMID: 34686148 Free PMC article.

101

Quantitative proteomics reveals the effect of Yigu decoction (YGD) on protein expression in bone tissue.

Zhang R, Yan K, Wu Y, Yao X, Li G, Ge L, Chen Z. Zhang R, et al. Clin Proteomics. 2021 Oct 12;18(1):24. doi: 10.1186/s12014-021-09330-0. Clin Proteomics. 2021. PMID: 34641785 Free PMC article.

102

Association between cardiovascular disease- and inflammation-related serum biomarkers and poor lung function in elderly.

Egervall K, Rosso A, Elmståhl S. Egervall K, et al. Clin Proteomics. 2021 Sep 28;18(1):23. doi: 10.1186/s12014-021-09329-7. Clin Proteomics. 2021. PMID: 34583636 Free PMC article.

103

iTRAQ-based quantitative proteomic analysis of thoracic aortas from adult rats born to preeclamptic dams.

Yu B, Zhu HD, Shi XL, Chen PP, Sun XM, Xia GY, Fang M, Zhong YX, Tang XL, Zhang T, Pan HT. Yu B, et al. Clin Proteomics. 2021 Aug 21;18(1):22. doi: 10.1186/s12014-021-09327-9. Clin Proteomics. 2021. PMID: 34418970 Free PMC article.

104

Validation and update of a multivariable prediction model for the identification and management of patients at risk for hepatocellular carcinoma.

Li B, Zhao Y, Cai W, Ming A, Li H. Li B, et al. Clin Proteomics. 2021 Aug 19;18(1):21. doi: 10.1186/s12014-021-09326-w. Clin Proteomics. 2021. PMID: 34412596 Free PMC article.

105

Mass spectrometry-based proteomics in basic and translational research of SARS-CoV-2 coronavirus and its emerging mutants.

Rais Y, Fu Z, Drabovich AP. Rais Y, et al. Clin Proteomics. 2021 Aug 12;18(1):19. doi: 10.1186/s12014-021-09325-x. Clin Proteomics. 2021. PMID: 34384361 Free PMC article. Review.

106

Robust optimization of SWATH-MS workflow for human blood serum proteome analysis using a quality by design approach.

Serrano-Blesa E, Porter A, Lendrem DW, Pitzalis C, Barton A, Treumann A, Isaacs JD. Serrano-Blesa E, et al. Clin Proteomics. 2021 Aug 12;18(1):20. doi: 10.1186/s12014-021-09323-z. Clin Proteomics. 2021. PMID: 34384350 Free PMC article.

107

Proteome profiling of human placenta reveals developmental stage-dependent alterations in protein signature.

Khorami Sarvestani S, Shojaeian S, Vanaki N, Ghresi-Fard B, Amini M, Gilany K, Soltanghoraee H, Arefi S, Jeddi-Tehrani M, Zarnani AH. Khorami Sarvestani S, et al. Clin Proteomics. 2021 Aug 9;18(1):18. doi: 10.1186/s12014-021-09324-y. Clin Proteomics. 2021. PMID: 34372761 Free PMC article.

108

The plasma peptides of Alzheimer's disease.

Florentinus-Mefailoski A, Bowden P, Scheltens P, Killestein J, Teunissen C, Marshall JG. Florentinus-Mefailoski A, et al. Clin Proteomics. 2021 Jun 28;18(1):17. doi: 10.1186/s12014-021-09320-2. Clin Proteomics. 2021. PMID: 34182925 Free PMC article.

109

Quantitative proteomic analysis of aberrant expressed lysine acetylation in gastrointestinal stromal tumors.

Wang B, Zhao L, Gao Z, Luo J, Zhang H, Gan L, Jiang K, Wang S, Ye Y, Shen Z. Wang B, et al. Clin Proteomics. 2021 May 22;18(1):16. doi: 10.1186/s12014-021-09322-0. Clin Proteomics. 2021. PMID: 34022816 Free PMC article.

110

A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19).

Rajczewski AT, Mehta S, Nguyen DDA, Grüning B, Johnson JE, McGowan T, Griffin TJ, Jagtap PD. Rajczewski AT, et al. Clin Proteomics. 2021 May 10;18(1):15. doi: 10.1186/s12014-021-09321-1. Clin Proteomics. 2021. PMID: 33971807 Free PMC article.

111

O-GlcNAcylation protein disruption by Thiamet G promotes changes on the GBM U87-MG cells secretome molecular signature.

Oliveira-Nunes MC, Julião G, Menezes A, Mariath F, Hanover JA, Evaristo JAM, Nogueira FCS, Dias WB, de Abreu Pereira D, Carneiro K. Oliveira-Nunes MC, et al. Clin Proteomics. 2021 Apr 26;18(1):14. doi: 10.1186/s12014-021-09317-x. Clin Proteomics. 2021. PMID: 33902430 Free PMC article.

112

The use of proteomics for blood biomarker research in premature infants: a scoping review.

Letunica N, Cai T, Cheong JLY, Doyle LW, Monagle P, Ignjatovic V. Letunica N, et al. Clin Proteomics. 2021 Apr 14;18(1):13. doi: 10.1186/s12014-021-09316-y. Clin Proteomics. 2021. PMID: 33853516 Free PMC article. Review.

113

The associations between red cell distribution width and plasma proteins in a general population.

Pan J, Borné Y, Orho-Melander M, Nilsson J, Melander O, Engström G. Pan J, et al. Clin Proteomics. 2021 Mar 30;18(1):12. doi: 10.1186/s12014-021-09319-9. Clin Proteomics. 2021. PMID: 33781199 Free PMC article.

114

Circulating proteins associated with allergy development in infants-an exploratory analysis.

Stockfelt M, Hong MG, Hesselmar B, Adlerberth I, Wold AE, Schwenk JM, Lundell AC, Rudin A. Stockfelt M, et al. Clin Proteomics. 2021 Mar 15;18(1):11. doi: 10.1186/s12014-021-09318-w. Clin Proteomics. 2021. PMID: 33722194 Free PMC article.

115

Proteomic analysis of decidua in patients with recurrent pregnancy loss (RPL) reveals mitochondrial oxidative stress dysfunction.

Yin XJ, Hong W, Tian FJ, Li XC. Yin XJ, et al. Clin Proteomics. 2021 Feb 22;18(1):9. doi: 10.1186/s12014-021-09312-2. Clin Proteomics. 2021. PMID: 33618676 Free PMC article.

116

Rational selection of a biomarker panel targeting unmet clinical needs in kidney injury.

van Duijl TT, Soonawala D, de Fijter JW, Ruhaak LR, Cobbaert CM. van Duijl TT, et al. Clin Proteomics. 2021 Feb 22;18(1):10. doi: 10.1186/s12014-021-09315-z. Clin Proteomics. 2021. PMID: 33618665 Free PMC article. Review.

117

Time dependent effect of cold ischemia on the phosphoproteome and protein kinase activity in fresh-frozen colorectal cancer tissue obtained from patients.

Buffart TE, van den Oord RAHM, van den Berg A, Hilhorst R, Bastiaensen N, Pruijt HFM, van den Brule A, Nooijen P, Labots M, de Goeij-de Haas RR, Dekker H, Piersma SR, Pham TV, van der Leij T, de Wijn R, Ruijtenbeek R, Jiménez CR, Verheul HMW. Buffart TE, et al. Clin Proteomics. 2021 Feb 18;18(1):8. doi: 10.1186/s12014-020-09306-6. Clin Proteomics. 2021. PMID: 33602116 Free PMC article.

118

Quantitative proteomics analysis of lysine 2-hydroxyisobutyrylation in IgA nephropathy.

Huang S, Zheng F, Lin H, Zhou X, Xu H, Zhang C, Dai W, Hocher B, Zhang X, Tang D, Dai Y. Huang S, et al. Clin Proteomics. 2021 Feb 8;18(1):7. doi: 10.1186/s12014-021-09314-0. Clin Proteomics. 2021. PMID: 33557746 Free PMC article.

119

Quantitative proteomics-based analyses performed on pre-eclampsia samples in the 2004-2020 period: a systematic review.

Navajas R, Corrales F, Paradela A. Navajas R, et al. Clin Proteomics. 2021 Jan 26;18(1):6. doi: 10.1186/s12014-021-09313-1. Clin Proteomics. 2021. PMID: 33499801 Free PMC article. Review.

120

Variable blood processing procedures contribute to plasma proteomic variability.

Halvey P, Farutin V, Koppes L, Gunay NS, Pappas DA, Manning AM, Capila I. Halvey P, et al. Clin Proteomics. 2021 Jan 19;18(1):5. doi: 10.1186/s12014-021-09311-3. Clin Proteomics. 2021. PMID: 33468058 Free PMC article.

121

Evaluation of the potential of Pap test fluid and cervical swabs to serve as clinical diagnostic biospecimens for the detection of ovarian cancer by mass spectrometry-based proteomics.

Boylan KLM, Afiuni-Zadeh S, Geller MA, Argenta PA, Griffin TJ, Skubitz APN. Boylan KLM, et al. Clin Proteomics. 2021 Jan 7;18(1):4. doi: 10.1186/s12014-020-09309-3. Clin Proteomics. 2021. PMID: 33413078 Free PMC article.

122

Global proteome profiling of human livers upon ischemia/reperfusion treatment.

Cai H, Qi S, Yan Q, Ling J, Du J, Chen L. Cai H, et al. Clin Proteomics. 2021 Jan 6;18(1):3. doi: 10.1186/s12014-020-09310-w. Clin Proteomics. 2021. PMID: 33407080 Free PMC article.

123

Label-free proteomic analysis of serum exosomes from paroxysmal atrial fibrillation patients.

Ni H, Pan W, Jin Q, Xie Y, Zhang N, Chen K, Lin T, Lin C, Xie Y, Wu J, Ni P, Wu L. Ni H, et al. Clin Proteomics. 2021 Jan 6;18(1):1. doi: 10.1186/s12014-020-09304-8. Clin Proteomics. 2021. PMID: 33407078 Free PMC article.

124

Identification of differentially expressed proteins and clinicopathological significance of HMGB2 in cervical cancer.

Han X, Zhong S, Zhang P, Liu Y, Shi S, Wu C, Gao S. Han X, et al. Clin Proteomics. 2021 Jan 6;18(1):2. doi: 10.1186/s12014-020-09308-4. Clin Proteomics. 2021. PMID: 33407071 Free PMC article.

125

Tear proteomic profile in three distinct ocular surface diseases: keratoconus, pterygium, and dry eye related to graft-versus-host disease.

de Almeida Borges D, Alborghetti MR, Franco Paes Leme A, Ramos Domingues R, Duarte B, Veiga M, Trindade Ferrer M, Viana Wanzeler AC, Leite Arieta CE, Alves M. de Almeida Borges D, et al. Clin Proteomics. 2020 Dec 7;17(1):42. doi: 10.1186/s12014-020-09307-5. Clin Proteomics. 2020. PMID: 33372592 Free PMC article.

126

Clinical proteomics for prostate cancer: understanding prostate cancer pathology and protein biomarkers for improved disease management.

Tonry C, Finn S, Armstrong J, Pennington SR. Tonry C, et al. Clin Proteomics. 2020 Nov 20;17(1):41. doi: 10.1186/s12014-020-09305-7. Clin Proteomics. 2020. PMID: 33292167 Free PMC article. Review.

127

Comparative analysis of differentially abundant proteins quantified by LC-MS/MS between flash frozen and laser microdissected OCT-embedded breast tumor samples.

Sturtz LA, Wang G, Shah P, Searfoss R, Raj-Kumar PK, Hooke JA, Fantacone-Campbell JL, Deyarmin B, Cutler ML, Sarangarajan R, Narain NR, Hu H, Kiebish MA, Kovatich AJ, Shriver CD. Sturtz LA, et al. Clin Proteomics. 2020 Nov 7;17(1):40. doi: 10.1186/s12014-020-09300-y. Clin Proteomics. 2020. PMID: 33292179 Free PMC article.

128

Subclinical effects of remote ischaemic conditioning in human kidney transplants revealed by quantitative proteomics.

Thorne AM, Huang H, O'Brien DP, Eijken M, Krogstrup NV, Norregaard R, Møller B, Ploeg RJ, Jespersen B, Kessler BM. Thorne AM, et al. Clin Proteomics. 2020 Nov 2;17(1):39. doi: 10.1186/s12014-020-09301-x. Clin Proteomics. 2020. PMID: 33292164 Free PMC article.

129

Application of SWATH mass spectrometry in the identification of circulating proteins does not predict future weight gain in early psychosis.

Heald A, Azadbakht N, Geary B, Conen S, Fachim H, Lee DCH, Geifman N, Farman S, Howes O, Whetton A, Deakin B. Heald A, et al. Clin Proteomics. 2020 Oct 27;17:38. doi: 10.1186/s12014-020-09299-2. eCollection 2020. Clin Proteomics. 2020. PMID: 33117088 Free PMC article.

130

A robust multiplex immunoaffinity mass spectrometry assay (PromarkerD) for clinical prediction of diabetic kidney disease.

Bringans S, Ito J, Casey T, Thomas S, Peters K, Crossett B, Coleman O, Ebhardt HA, Pennington SR, Lipscombe R. Bringans S, et al. Clin Proteomics. 2020 Oct 20;17:37. doi: 10.1186/s12014-020-09302-w. eCollection 2020. Clin Proteomics. 2020. PMID: 33093819 Free PMC article.

131

Early changes in tear film protein profiles after femtosecond LASIK surgery.

Nättinen J, Mäkinen P, Aapola U, Orsila L, Pietilä J, Uusitalo H. Nättinen J, et al. Clin Proteomics. 2020 Oct 19;17:36. doi: 10.1186/s12014-020-09303-9. eCollection 2020. Clin Proteomics. 2020. PMID: 33088244 Free PMC article.

132

A proteomic repertoire of autoantigens identified from the classic autoantibody clinical test substrate HEp-2 cells.

Wang JY, Zhang W, Rho JH, Roehrl MW, Roehrl MH. Wang JY, et al. Clin Proteomics. 2020 Sep 21;17:35. doi: 10.1186/s12014-020-09298-3. eCollection 2020. Clin Proteomics. 2020. PMID: 32973414 Free PMC article.

133

A nomogram based on glycomic biomarkers in serum and clinicopathological characteristics for evaluating the risk of peritoneal metastasis in gastric cancer.

Zhao J, Qin R, Chen H, Yang Y, Qin W, Han J, Wang X, Ren S, Sun Y, Gu J. Zhao J, et al. Clin Proteomics. 2020 Sep 19;17:34. doi: 10.1186/s12014-020-09297-4. eCollection 2020. Clin Proteomics. 2020. PMID: 32968368 Free PMC article.

134

Development of robust targeted proteomics assays for cerebrospinal fluid biomarkers in multiple sclerosis.

Guldbrandsen A, Lereim RR, Jacobsen M, Garberg H, Kroksveen AC, Barsnes H, Berven FS. Guldbrandsen A, et al. Clin Proteomics. 2020 Sep 18;17:33. doi: 10.1186/s12014-020-09296-5. eCollection 2020. Clin Proteomics. 2020. PMID: 32963504 Free PMC article.

135

Chloride intracellular channel 4 participate in the protective effect of Ginkgolide B in MPP+ injured MN9D cells: insight from proteomic analysis.

Feng Z, Zhu Z, Chen W, Bai Y, Hu D, Cheng J. Feng Z, et al. Clin Proteomics. 2020 Sep 5;17:32. doi: 10.1186/s12014-020-09295-6. eCollection 2020. Clin Proteomics. 2020. PMID: 32944011 Free PMC article.

136

CSF extracellular vesicle proteomics demonstrates altered protein homeostasis in amyotrophic lateral sclerosis.

Thompson AG, Gray E, Mäger I, Thézénas ML, Charles PD, Talbot K, Fischer R, Kessler BM, Wood M, Turner MR. Thompson AG, et al. Clin Proteomics. 2020 Aug 17;17:31. doi: 10.1186/s12014-020-09294-7. eCollection 2020. Clin Proteomics. 2020. PMID: 32821252 Free PMC article.

137

Quantitative analysis of differentially expressed proteins in psoriasis vulgaris using tandem mass tags and parallel reaction monitoring.

Li Y, Lin P, Wang S, Li S, Wang R, Yang L, Wang H. Li Y, et al. Clin Proteomics. 2020 Aug 12;17:30. doi: 10.1186/s12014-020-09293-8. eCollection 2020. Clin Proteomics. 2020. PMID: 32817748 Free PMC article.

138

Proteomic analysis of synovial fluid from rheumatic arthritis and spondyloarthritis patients.

Birkelund S, Bennike TB, Kastaniegaard K, Lausen M, Poulsen TBG, Kragstrup TW, Deleuran BW, Christiansen G, Stensballe A. Birkelund S, et al. Clin Proteomics. 2020 Aug 6;17:29. doi: 10.1186/s12014-020-09292-9. eCollection 2020. Clin Proteomics. 2020. PMID: 32782445 Free PMC article.

139

Proteomic approaches for characterizing renal cell carcinoma.

Clark DJ, Zhang H. Clark DJ, et al. Clin Proteomics. 2020 Jul 29;17:28. doi: 10.1186/s12014-020-09291-w. eCollection 2020. Clin Proteomics. 2020. PMID: 32742246 Free PMC article. Review.

140

Using phosphoproteomics data to understand cellular signaling: a comprehensive guide to bioinformatics resources.

Savage SR, Zhang B. Savage SR, et al. Clin Proteomics. 2020 Jul 11;17:27. doi: 10.1186/s12014-020-09290-x. eCollection 2020. Clin Proteomics. 2020. PMID: 32676006 Free PMC article. Review.

141

The plasma peptides of sepsis.

Thavarajah T, Dos Santos CC, Slutsky AS, Marshall JC, Bowden P, Romaschin A, Marshall JG. Thavarajah T, et al. Clin Proteomics. 2020 Jul 2;17:26. doi: 10.1186/s12014-020-09288-5. eCollection 2020. Clin Proteomics. 2020. PMID: 32636717 Free PMC article.

142

Identification of pathogens from native urine samples by MALDI-TOF/TOF tandem mass spectrometry.

Oros D, Ceprnja M, Zucko J, Cindric M, Hozic A, Skrlin J, Barisic K, Melvan E, Uroic K, Kos B, Starcevic A. Oros D, et al. Clin Proteomics. 2020 Jun 23;17:25. doi: 10.1186/s12014-020-09289-4. eCollection 2020. Clin Proteomics. 2020. PMID: 32581661 Free PMC article.

143

Laser capture microdissection coupled mass spectrometry (LCM-MS) for spatially resolved analysis of formalin-fixed and stained human lung tissues.

Herrera JA, Mallikarjun V, Rosini S, Montero MA, Lawless C, Warwood S, O'Cualain R, Knight D, Schwartz MA, Swift J. Herrera JA, et al. Clin Proteomics. 2020 Jun 17;17:24. doi: 10.1186/s12014-020-09287-6. eCollection 2020. Clin Proteomics. 2020. PMID: 32565759 Free PMC article.

144

Activity-based protein profiling guided identification of urine proteinase 3 activity in subclinical rejection after renal transplantation.

Navarrete M, Korkmaz B, Guarino C, Lesner A, Lao Y, Ho J, Nickerson P, Wilkins JA. Navarrete M, et al. Clin Proteomics. 2020 Jun 16;17:23. doi: 10.1186/s12014-020-09284-9. eCollection 2020. Clin Proteomics. 2020. PMID: 32549867 Free PMC article.

145

Human follicular fluid proteome reveals association between overweight status and oocyte maturation abnormality.

Liu X, Wang Y, Zhu P, Wang J, Liu J, Li N, Wang W, Zhang W, Zhang C, Wang Y, Shen X, Liu F. Liu X, et al. Clin Proteomics. 2020 Jun 8;17:22. doi: 10.1186/s12014-020-09286-7. eCollection 2020. Clin Proteomics. 2020. PMID: 32528235 Free PMC article.

146

A comprehensive systematic review of CSF proteins and peptides that define Alzheimer's disease.

Pedrero-Prieto CM, García-Carpintero S, Frontiñán-Rubio J, Llanos-González E, Aguilera García C, Alcaín FJ, Lindberg I, Durán-Prado M, Peinado JR, Rabanal-Ruiz Y. Pedrero-Prieto CM, et al. Clin Proteomics. 2020 Jun 5;17:21. doi: 10.1186/s12014-020-09276-9. eCollection 2020. Clin Proteomics. 2020. PMID: 32518535 Free PMC article. Review.

147

Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis.

Lee JH, Jung JH, Kim J, Baek WK, Rhee J, Kim TH, Kim SH, Kim KP, Son CN, Kim JS. Lee JH, et al. Clin Proteomics. 2020 Jun 1;17:20. doi: 10.1186/s12014-020-09281-y. eCollection 2020. Clin Proteomics. 2020. PMID: 32518534 Free PMC article.

148

Targeted mass spectrometry to quantify brain-derived cerebrospinal fluid biomarkers in Alzheimer's disease.

Zhou M, Haque RU, Dammer EB, Duong DM, Ping L, Johnson ECB, Lah JJ, Levey AI, Seyfried NT. Zhou M, et al. Clin Proteomics. 2020 May 29;17:19. doi: 10.1186/s12014-020-09285-8. eCollection 2020. Clin Proteomics. 2020. PMID: 32514259 Free PMC article.

149

New risk score for predicting steroid resistance in patients with focal segmental glomerulosclerosis or minimal change disease.

Weng Q, Zhou Q, Tong J, Jin Y, Liu Y, Yu X, Pan X, Ren H, Wang W, Xie J, Chen N. Weng Q, et al. Clin Proteomics. 2020 May 29;17:18. doi: 10.1186/s12014-020-09282-x. eCollection 2020. Clin Proteomics. 2020. PMID: 32514258 Free PMC article.

150

Recent advances in mass spectrometry based clinical proteomics: applications to cancer research.

Macklin A, Khan S, Kislinger T. Macklin A, et al. Clin Proteomics. 2020 May 24;17:17. doi: 10.1186/s12014-020-09283-w. eCollection 2020. Clin Proteomics. 2020. PMID: 32489335 Free PMC article. Review.

151

Identification of TUBB2A by quantitative proteomic analysis as a novel biomarker for the prediction of distant metastatic breast cancer.

Shin D, Park J, Han D, Moon JH, Ryu HS, Kim Y. Shin D, et al. Clin Proteomics. 2020 May 24;17:16. doi: 10.1186/s12014-020-09280-z. eCollection 2020. Clin Proteomics. 2020. PMID: 32489334 Free PMC article.

152

Effects of cryopreservation and long-term culture on biological characteristics and proteomic profiles of human umbilical cord-derived mesenchymal stem cells.

Fu X, Xu B, Jiang J, Du X, Yu X, Yan Y, Li S, Inglis BM, Ma H, Wang H, Pei X, Si W. Fu X, et al. Clin Proteomics. 2020 May 24;17:15. doi: 10.1186/s12014-020-09279-6. eCollection 2020. Clin Proteomics. 2020. PMID: 32489333 Free PMC article.

153

Mass spectrometry-based microbiological testing for blood stream infection.

Nomura F, Tsuchida S, Murata S, Satoh M, Matsushita K. Nomura F, et al. Clin Proteomics. 2020 May 13;17:14. doi: 10.1186/s12014-020-09278-7. eCollection 2020. Clin Proteomics. 2020. PMID: 32435163 Free PMC article. Review.

154

Development of a novel method for the quantification of tyrosine 39 phosphorylated α- and β-synuclein in human cerebrospinal fluid.

Na CH, Sathe G, Rosenthal LS, Moghekar AR, Dawson VL, Dawson TM, Pandey A. Na CH, et al. Clin Proteomics. 2020 May 4;17:13. doi: 10.1186/s12014-020-09277-8. eCollection 2020. Clin Proteomics. 2020. PMID: 32390785 Free PMC article.

155

A comprehensive analysis of sialolith proteins and the clinical implications.

Busso CS, Guidry JJ, Gonzalez JJ, Zorba V, Son LS, Winsauer PJ, Walvekar RR. Busso CS, et al. Clin Proteomics. 2020 Mar 31;17:12. doi: 10.1186/s12014-020-09275-w. eCollection 2020. Clin Proteomics. 2020. PMID: 32265614 Free PMC article.

156

Early detection of Ebola virus proteins in peripheral blood mononuclear cells from infected mice.

Ward MD, Kenny T, Bruggeman E, Kane CD, Morrell CL, Kane MM, Bixler S, Grady SL, Quizon RS, Astatke M, Cazares LH. Ward MD, et al. Clin Proteomics. 2020 Mar 17;17:11. doi: 10.1186/s12014-020-09273-y. eCollection 2020. Clin Proteomics. 2020. PMID: 32194356 Free PMC article.

157

Urinary proteomics of Henoch-Schönlein purpura nephritis in children using liquid chromatography-tandem mass spectrometry.

Fang X, Wu H, Lu M, Cao Y, Wang R, Wang M, Gao C, Xia Z. Fang X, et al. Clin Proteomics. 2020 Mar 12;17:10. doi: 10.1186/s12014-020-09274-x. eCollection 2020. Clin Proteomics. 2020. PMID: 32190014 Free PMC article.

158

The impact of ultraviolet- and infrared-based laser microdissection technology on phosphoprotein detection in the laser microdissection-reverse phase protein array workflow.

Hunt AL, Pierobon M, Baldelli E, Oliver J, Mitchell D, Gist G, Bateman NW, Larry Maxwell G, Petricoin EF, Conrads TP. Hunt AL, et al. Clin Proteomics. 2020 Mar 9;17:9. doi: 10.1186/s12014-020-09272-z. eCollection 2020. Clin Proteomics. 2020. PMID: 32165870 Free PMC article.

159

The different expression of glycogen phosphorylases in renal clear cell renal carcinoma and chromophobe renal carcinoma.

Lu Y, Luo G, Zhu S, Wang X, Chen Y, Dong Z, Wang S, Ma J, Deng H, Wu D, Dong J. Lu Y, et al. Clin Proteomics. 2020 Feb 26;17:7. doi: 10.1186/s12014-020-9270-0. eCollection 2020. Clin Proteomics. 2020. PMID: 32127786 Free PMC article.

160

Correction to: Proteomic analysis of degradation ubiquitin signaling by ubiquitin occupancy changes responding to 26S proteasome inhibition.

Hristova V, Sun S, Zhang H, Chan DW. Hristova V, et al. Clin Proteomics. 2020 Feb 21;17:6. doi: 10.1186/s12014-020-09271-0. eCollection 2020. Clin Proteomics. 2020. PMID: 32110166 Free PMC article.

161

Discovery of a putative blood-based protein signature associated with response to ALK tyrosine kinase inhibition.

Couëtoux du Tertre M, Marques M, McNamara S, Gambaro K, Hoffert C, Tremblay L, Bouchard N, Diaconescu R, Blais N, Couture C, Pelsser V, Wang H, McIntosh L, Hindie V, Parent S, Cortes L, Breton YA, Pottiez G, Croteau P, Higenell V, Izzi L, Spatz A, Cohen V, Batist G, Agulnik J. Couëtoux du Tertre M, et al. Clin Proteomics. 2020 Feb 7;17:5. doi: 10.1186/s12014-020-9269-6. eCollection 2020. Clin Proteomics. 2020. PMID: 32055239 Free PMC article.

162

Prediction of neoadjuvant chemotherapeutic efficacy in patients with locally advanced gastric cancer by serum IgG glycomics profiling.

Qin R, Yang Y, Chen H, Qin W, Han J, Gu Y, Pan Y, Cheng X, Zhao J, Wang X, Ren S, Sun Y, Gu J. Qin R, et al. Clin Proteomics. 2020 Feb 6;17:4. doi: 10.1186/s12014-020-9267-8. eCollection 2020. Clin Proteomics. 2020. PMID: 32042279 Free PMC article.

163

Quantitative site- and structure-specific N-glycoproteomics characterization of differential N-glycosylation in MCF-7/ADR cancer stem cells.

Xu F, Wang Y, Xiao K, Hu Y, Tian Z, Chen Y. Xu F, et al. Clin Proteomics. 2020 Feb 5;17:3. doi: 10.1186/s12014-020-9268-7. eCollection 2020. Clin Proteomics. 2020. PMID: 32042278 Free PMC article.

164

Proteomic analysis of degradation ubiquitin signaling by ubiquitin occupancy changes responding to 26S proteasome inhibition.

Hristova V, Sun S, Zhang H, Chan DW. Hristova V, et al. Clin Proteomics. 2020 Jan 25;17:2. doi: 10.1186/s12014-020-9265-x. eCollection 2020. Clin Proteomics. 2020. PMID: 31997977 Free PMC article.

165

The omics revolution: beyond genomics. A meeting report.

Nice EC. Nice EC. Clin Proteomics. 2020 Jan 24;17:1. doi: 10.1186/s12014-020-9266-9. eCollection 2020. Clin Proteomics. 2020. PMID: 31997976 Free PMC article.

166

Proteomics analysis of colon cancer progression.

Saleem S, Tariq S, Aleem I, Sadr-Ul Shaheed, Tahseen M, Atiq A, Hassan S, Abu Bakar M, Khattak S, Syed AA, Ahmad AH, Hussain M, Yusuf MA, Sutton C. Saleem S, et al. Clin Proteomics. 2019 Dec 28;16:44. doi: 10.1186/s12014-019-9264-y. eCollection 2019. Clin Proteomics. 2019. PMID: 31889941 Free PMC article.

167

The plasma peptides of breast versus ovarian cancer.

Dufresne J, Bowden P, Thavarajah T, Florentinus-Mefailoski A, Chen ZZ, Tucholska M, Norzin T, Ho MT, Phan M, Mohamed N, Ravandi A, Stanton E, Slutsky AS, Dos Santos CC, Romaschin A, Marshall JC, Addison C, Malone S, Heyland D, Scheltens P, Killestein J, Teunissen C, Diamandis EP, Siu KWM, Marshall JG. Dufresne J, et al. Clin Proteomics. 2019 Dec 23;16:43. doi: 10.1186/s12014-019-9262-0. eCollection 2019. Clin Proteomics. 2019. PMID: 31889940 Free PMC article.

168

Quantitative proteome analysis of Merkel cell carcinoma cell lines using SILAC.

Kotowski U, Erović BM, Schnöll J, Stanek V, Janik S, Steurer M, Mitulović G. Kotowski U, et al. Clin Proteomics. 2019 Dec 19;16:42. doi: 10.1186/s12014-019-9263-z. eCollection 2019. Clin Proteomics. 2019. PMID: 31889939 Free PMC article.

169

Clinical method evaluation of hemoglobin S and C identification by top-down selected reaction monitoring and electron transfer dissociation.

Lassout O, Hartmer R, Jabs W, Clerici L, Tsybin YO, Samii K, Vuilleumier N, Hochstrasser D, Scherl A, Lescuyer P, Coelho Graça D. Lassout O, et al. Clin Proteomics. 2019 Dec 17;16:41. doi: 10.1186/s12014-019-9261-1. eCollection 2019. Clin Proteomics. 2019. PMID: 31889938 Free PMC article.

170

The associations of self-rated health with cardiovascular risk proteins: a proteomics approach.

Bao X, Borné Y, Yin S, Niu K, Orho-Melander M, Nilsson J, Melander O, Engström G. Bao X, et al. Clin Proteomics. 2019 Nov 18;16:40. doi: 10.1186/s12014-019-9258-9. eCollection 2019. Clin Proteomics. 2019. PMID: 31832026 Free PMC article.

171

Quantitative analysis of Mycobacterium avium subsp. hominissuis proteome in response to antibiotics and during exposure to different environmental conditions.

Rojony R, Martin M, Campeau A, Wozniak JM, Gonzalez DJ, Jaiswal P, Danelishvili L, Bermudez LE. Rojony R, et al. Clin Proteomics. 2019 Nov 13;16:39. doi: 10.1186/s12014-019-9260-2. eCollection 2019. Clin Proteomics. 2019. PMID: 31749666 Free PMC article.

172

iTRAQ-based quantitative proteomic analysis provides insight for molecular mechanism of neuroticism.

Tian L, You HZ, Wu H, Wei Y, Zheng M, He L, Liu JY, Guo SZ, Zhao Y, Zhou RL, Hu X. Tian L, et al. Clin Proteomics. 2019 Nov 8;16:38. doi: 10.1186/s12014-019-9259-8. eCollection 2019. Clin Proteomics. 2019. PMID: 31719821 Free PMC article.

173

Matrisome analysis of intrahepatic cholangiocarcinoma unveils a peculiar cancer-associated extracellular matrix structure.

Carpino G, Overi D, Melandro F, Grimaldi A, Cardinale V, Di Matteo S, Mennini G, Rossi M, Alvaro D, Barnaba V, Gaudio E, Mancone C. Carpino G, et al. Clin Proteomics. 2019 Oct 30;16:37. doi: 10.1186/s12014-019-9257-x. eCollection 2019. Clin Proteomics. 2019. PMID: 31687002 Free PMC article.

174

iTRAQ and PRM-based quantitative proteomics in early recurrent spontaneous abortion: biomarkers discovery.

Cui Y, He L, Yang CY, Ye Q. Cui Y, et al. Clin Proteomics. 2019 Oct 18;16:36. doi: 10.1186/s12014-019-9256-y. eCollection 2019. Clin Proteomics. 2019. PMID: 31636515 Free PMC article.

175

N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping.

Sun S, Hu Y, Ao M, Shah P, Chen J, Yang W, Jia X, Tian Y, Thomas S, Zhang H. Sun S, et al. Clin Proteomics. 2019 Sep 7;16:35. doi: 10.1186/s12014-019-9254-0. eCollection 2019. Clin Proteomics. 2019. PMID: 31516400 Free PMC article.

176

Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel.

Ahn SB, Sharma S, Mohamedali A, Mahboob S, Redmond WJ, Pascovici D, Wu JX, Zaw T, Adhikari S, Vaibhav V, Nice EC, Baker MS. Ahn SB, et al. Clin Proteomics. 2019 Aug 28;16:34. doi: 10.1186/s12014-019-9255-z. eCollection 2019. Clin Proteomics. 2019. PMID: 31467500 Free PMC article.

177

iTRAQ plasma proteomics analysis for candidate biomarkers of type 2 incipient diabetic nephropathy.

Lu H, Deng S, Zheng M, Hu K. Lu H, et al. Clin Proteomics. 2019 Jul 31;16:33. doi: 10.1186/s12014-019-9253-1. eCollection 2019. Clin Proteomics. 2019. PMID: 31384238 Free PMC article.

178

Screening differentially expressed proteins from co-cultured hematopoietic cells and bone marrow-derived stromal cells by quantitative proteomics (SILAC) method.

Liu R, Wang Y, Li B, Wang H, Guan F, Tan Z, Li X. Liu R, et al. Clin Proteomics. 2019 Jul 18;16:32. doi: 10.1186/s12014-019-9249-x. eCollection 2019. Clin Proteomics. 2019. PMID: 31360146 Free PMC article.

179

Predictive proteomic signatures for response of pancreatic cancer patients receiving chemotherapy.

Peng H, Chen R, Brentnall TA, Eng JK, Picozzi VJ, Pan S. Peng H, et al. Clin Proteomics. 2019 Jul 17;16:31. doi: 10.1186/s12014-019-9251-3. eCollection 2019. Clin Proteomics. 2019. PMID: 31346328 Free PMC article.

180

Correction to: A proteome-wide immuno-mass spectrometric identification of serum autoantibodies.

Music M, Soosaipillai A, Batruch I, Prassas I, Bogdanos DP, Diamandis EP. Music M, et al. Clin Proteomics. 2019 Jul 17;16:30. doi: 10.1186/s12014-019-9250-4. eCollection 2019. Clin Proteomics. 2019. PMID: 31346327 Free PMC article.

181

Lipid metabolism impairment in patients with sepsis secondary to hospital acquired pneumonia, a proteomic analysis.

Sharma NK, Ferreira BL, Tashima AK, Brunialti MKC, Torquato RJS, Bafi A, Assuncao M, Azevedo LCP, Salomao R. Sharma NK, et al. Clin Proteomics. 2019 Jul 16;16:29. doi: 10.1186/s12014-019-9252-2. eCollection 2019. Clin Proteomics. 2019. PMID: 31341447 Free PMC article.

182

Discovering endometriosis biomarkers with multiplex cytokine arrays.

Weisheng B, Nezhat CH, Huang GF, Mao YQ, Sidell N, Huang RP. Weisheng B, et al. Clin Proteomics. 2019 Jul 11;16:28. doi: 10.1186/s12014-019-9248-y. eCollection 2019. Clin Proteomics. 2019. PMID: 31333337 Free PMC article.

183

Correction to: Comprehensive proteome and phosphoproteome profiling shows negligible influence of RNAlater on protein abundance and phosphorylation.

Bae J, Kim SJ, Lee SE, Kwon W, Kim H, Han Y, Jang JY, Kim MS, Lee SW. Bae J, et al. Clin Proteomics. 2019 Jul 11;16:27. doi: 10.1186/s12014-019-9247-z. eCollection 2019. Clin Proteomics. 2019. PMID: 31333336 Free PMC article.

184

Phenotyping multiple subsets in Sjögren's syndrome: a salivary proteomic SWATH-MS approach towards precision medicine.

Cecchettini A, Finamore F, Ucciferri N, Donati V, Mattii L, Polizzi E, Ferro F, Sernissi F, Mosca M, Bombardieri S, Rocchiccioli S, Baldini C. Cecchettini A, et al. Clin Proteomics. 2019 Jun 20;16:26. doi: 10.1186/s12014-019-9245-1. eCollection 2019. Clin Proteomics. 2019. PMID: 31249499 Free PMC article.

185

A proteome-wide immuno-mass spectrometric identification of serum autoantibodies.

Music M, Soosaipillai A, Batruch I, Prassas I, Bogdanos DP, Diamandis EP. Music M, et al. Clin Proteomics. 2019 Jun 20;16:25. doi: 10.1186/s12014-019-9246-0. eCollection 2019. Clin Proteomics. 2019. PMID: 31249498 Free PMC article.

186

Differential motility parameters and identification of proteomic profiles of human sperm cryopreserved with cryostraw and cryovial.

Li S, Ao L, Yan Y, Jiang J, Chen B, Duan Y, Shen F, Chen J, Inglis B, Ni R, Ji W, Si W. Li S, et al. Clin Proteomics. 2019 Jun 19;16:24. doi: 10.1186/s12014-019-9244-2. eCollection 2019. Clin Proteomics. 2019. PMID: 31244561 Free PMC article.

187

Elucidating the endogenous synovial fluid proteome and peptidome of inflammatory arthritis using label-free mass spectrometry.

Mahendran SM, Keystone EC, Krawetz RJ, Liang K, Diamandis EP, Chandran V. Mahendran SM, et al. Clin Proteomics. 2019 May 30;16:23. doi: 10.1186/s12014-019-9243-3. eCollection 2019. Clin Proteomics. 2019. PMID: 31160890 Free PMC article.

188

Plasma proteomic and autoantibody profiles reveal the proteomic characteristics involved in longevity families in Bama, China.

Ye S, Ma L, Zhang R, Liu F, Jiang P, Xu J, Cao H, Du X, Lin F, Cheng L, Zhou X, Shi Z, Liu Y, Huang Y, Wang Z, Li C. Ye S, et al. Clin Proteomics. 2019 May 20;16:22. doi: 10.1186/s12014-019-9242-4. eCollection 2019. Clin Proteomics. 2019. PMID: 31139026 Free PMC article.

189

Biomarkers of blood cadmium and incidence of cardiovascular events in non-smokers: results from a population-based proteomics study.

Borné Y, Fagerberg B, Sallsten G, Hedblad B, Persson M, Melander O, Nilsson J, Orho-Melander M, Barregard L, Engström G. Borné Y, et al. Clin Proteomics. 2019 May 15;16:21. doi: 10.1186/s12014-019-9231-7. eCollection 2019. Clin Proteomics. 2019. PMID: 31114450 Free PMC article.

190

Stage-associated differences in the serum N- and O-glycan profiles of patients with non-small cell lung cancer.

Liang Y, Han P, Wang T, Ren H, Gao L, Shi P, Zhang S, Yang A, Li Z, Chen M. Liang Y, et al. Clin Proteomics. 2019 May 10;16:20. doi: 10.1186/s12014-019-9240-6. eCollection 2019. Clin Proteomics. 2019. PMID: 31168300 Free PMC article.

191

Quantitative proteomic analyses of CD4⁺ and CD8⁺ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls.

Berge T, Eriksson A, Brorson IS, Høgestøl EA, Berg-Hansen P, Døskeland A, Mjaavatten O, Bos SD, Harbo HF, Berven F. Berge T, et al. Clin Proteomics. 2019 May 8;16:19. doi: 10.1186/s12014-019-9241-5. eCollection 2019. Clin Proteomics. 2019. PMID: 31080378 Free PMC article.

192

Comprehensive proteome and phosphoproteome profiling shows negligible influence of RNAlater on protein abundance and phosphorylation.

Bae J, Kim SJ, Lee SE, Kwon W, Kim H, Han Y, Jang JY, Kim MS, Lee SW. Bae J, et al. Clin Proteomics. 2019 Apr 25;16:18. doi: 10.1186/s12014-019-9239-z. eCollection 2019. Clin Proteomics. 2019. PMID: 31049047 Free PMC article.

193

Variability of serum novel serum peptide biomarkers correlates with the disease states of multiple myeloma.

Bai J, Yang Y, Wang J, Zhang L, Wang F, He A. Bai J, et al. Clin Proteomics. 2019 Apr 23;16:17. doi: 10.1186/s12014-019-9238-0. eCollection 2019. Clin Proteomics. 2019. PMID: 31043929 Free PMC article.

194

Deep undepleted human serum proteome profiling toward biomarker discovery for Alzheimer's disease.

Dey KK, Wang H, Niu M, Bai B, Wang X, Li Y, Cho JH, Tan H, Mishra A, High AA, Chen PC, Wu Z, Beach TG, Peng J. Dey KK, et al. Clin Proteomics. 2019 Apr 17;16:16. doi: 10.1186/s12014-019-9237-1. eCollection 2019. Clin Proteomics. 2019. PMID: 31019427 Free PMC article.

195

Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer.

Zhou B, Yan Y, Wang Y, You S, Freeman MR, Yang W. Zhou B, et al. Clin Proteomics. 2019 Apr 13;16:15. doi: 10.1186/s12014-019-9236-2. eCollection 2019. Clin Proteomics. 2019. PMID: 31011308 Free PMC article.

196

Development of a glycoproteomic strategy to detect more aggressive prostate cancer using lectin-immunoassays for serum fucosylated PSA.

Wang C, Höti N, Lih TM, Sokoll LJ, Zhang R, Zhang Z, Zhang H, Chan DW. Wang C, et al. Clin Proteomics. 2019 Apr 6;16:13. doi: 10.1186/s12014-019-9234-4. eCollection 2019. Clin Proteomics. 2019. PMID: 30996714 Free PMC article.

197

Discovery of non-invasive biomarkers for the diagnosis of endometriosis.

Irungu S, Mavrelos D, Worthington J, Blyuss O, Saridogan E, Timms JF. Irungu S, et al. Clin Proteomics. 2019 Apr 6;16:14. doi: 10.1186/s12014-019-9235-3. eCollection 2019. Clin Proteomics. 2019. PMID: 30992697 Free PMC article.

198

Identification of prothymosin alpha (PTMA) as a biomarker for esophageal squamous cell carcinoma (ESCC) by label-free quantitative proteomics and Quantitative Dot Blot (QDB).

Zhu Y, Qi X, Yu C, Yu S, Zhang C, Zhang Y, Liu X, Xu Y, Yang C, Jiang W, Tian G, Li X, Bergquist J, Zhang J, Wang L, Mi J. Zhu Y, et al. Clin Proteomics. 2019 Apr 5;16:12. doi: 10.1186/s12014-019-9232-6. eCollection 2019. Clin Proteomics. 2019. PMID: 30988666 Free PMC article.

199

Age-associated changes in human tear proteome.

Nättinen J, Jylhä A, Aapola U, Mäkinen P, Beuerman R, Pietilä J, Vaajanen A, Uusitalo H. Nättinen J, et al. Clin Proteomics. 2019 Mar 30;16:11. doi: 10.1186/s12014-019-9233-5. eCollection 2019. Clin Proteomics. 2019. PMID: 30976209 Free PMC article.

200

A multiplex immunoassay of serum biomarkers for the detection of uveal melanoma.

Song J, Merbs SL, Sokoll LJ, Chan DW, Zhang Z. Song J, et al. Clin Proteomics. 2019 Mar 5;16:10. doi: 10.1186/s12014-019-9230-8. eCollection 2019. Clin Proteomics. 2019. PMID: 30867659 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Results by year

Text availability

Article attribute

Article type

Publication date

464 results

Results by year

Search Page

Filters

My NCBI Filters

Results by year

Text availability

Article attribute

Article type

Publication date

Search Results

464 results

Results by year