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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2007 1
2008 2
2009 82
2010 284
2011 334
2012 444
2013 447
2014 555
2015 677
2016 821
2017 942
2018 1073
2019 618
2020 10
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5,537 results
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Page 1
The challenge of diagnostic metagenomics.
Greninger AL. Expert Rev Mol Diagn 2018 - Review. PMID 29898605
The high cost and low marginal utility compared to 'standard of care' diagnostics have forced metagenomics to be mostly used for last-ditch cases. ...Significant reductions in the cost of metagenomic sequencing are required for it to move up in the diagnostic pipeline. This review covers these associated obstacles of metagenomics, arguing for a parsimonious role in last-ditch diagnostics and awaiting the answer of many outstanding questions regarding its adoption....
The high cost and low marginal utility compared to 'standard of care' diagnostics have forced metagenomics to be mostly used for last …
Metagenomics.
[No authors listed] Nat Biotechnol 2019. PMID 31053813
Metagenomics using next-generation sequencing.
Bragg L and Tyson GW. Methods Mol Biol 2014. PMID 24515370
This approach is commonly referred to as "metagenomics" or "community genomics". However, the term metagenomics is applied liberally in the literature to describe any culture-independent analysis of microbial communities. Here, we define metagenomics as shotgun ("random") sequencing of the genomic DNA of a sample taken directly from the environment. ...
This approach is commonly referred to as "metagenomics" or "community genomics". However, the term metagenomics is applied lib …
Methods for The Metagenomic Data Visualization and Analysis.
Sudarikov K, et al. Curr Issues Mol Biol 2017 - Review. PMID 28686567 Free article.
Surveys of environmental microbial communities using metagenomic approach produce vast volumes of multidimensional data regarding the phylogenetic and functional composition of the microbiota. Faced with such complex data, a metagenomic researcher needs to select the means for data analysis properly. Data visualization became an indispensable part of the exploratory data analysis and serves a key to the discoveries. ...
Surveys of environmental microbial communities using metagenomic approach produce vast volumes of multidimensional data regarding the …
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.
Li D, et al. Bioinformatics 2015. PMID 25609793
MEGAHIT is a NGS de novo assembler for assembling large and complex metagenomics data in a time- and cost-efficient manner. It finished assembling a soil metagenomics dataset with 252 Gbps in 44.1 and 99.6 h on a single computing node with and without a graphics processing unit, respectively. ...
MEGAHIT is a NGS de novo assembler for assembling large and complex metagenomics data in a time- and cost-efficient manner. It finish …
'Metagenomics 2.0'.
McMahon K. Environ Microbiol Rep 2015. PMID 25721602
Microbial Metagenomics Mock Scenario-based Sample Simulation (M(3)S(3)).
Motro Y and Moran-Gilad J. Clin Microbiol Infect 2018. PMID 28811246 Free article.
While software solutions for metagenomics proliferate, integration of metagenomics in clinical care requires method standardization and validation. Virtual metagenomics samples could underpin validation by substituting real samples and thus we sought to develop a novel solution for simulation of metagenomics samples based on user-defined clinical scenarios. ...
While software solutions for metagenomics proliferate, integration of metagenomics in clinical care requires method standardiz …
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