"Mob DNA"[Journal] - Search Results

Year	Number of Results
2010	25
2011	15
2012	21
2013	27
2014	28
2015	21
2016	25
2017	22
2018	36
2019	54
2020	33
2021	28
2022	31
2023	22
2024	27
2025	52
2026	9

1

Centromeric retrotransposons shape chromosomal evolution beyond pericentromeric regions.

Poretti M, Mandáková T, Choudhury RR, Wuetschert L, Lysak MA, Parisod C. Poretti M, et al. Mob DNA. 2026 Apr 1. doi: 10.1186/s13100-026-00398-9. Online ahead of print. Mob DNA. 2026. PMID: 41923128 Free article. No abstract available.

2

A phylogenetic estimate of canine retrotransposition rates based on genome assembly comparisons.

Blacksmith MS, Nguyen AK, Moran JV, Kidd JM. Blacksmith MS, et al. Mob DNA. 2026 Mar 20. doi: 10.1186/s13100-026-00397-w. Online ahead of print. Mob DNA. 2026. PMID: 41857646 Free article. No abstract available.

3

Massive proliferation of retrotransposons contributes to genome size expansion in species of the Pseudocercospora genus.

González Sáyer SM, Garcia IA, Traslaviña CA, Zaccaron AZ, Stergiopoulos I, Aristizabal FA, Oggenfuss U, Croll D. González Sáyer SM, et al. Mob DNA. 2026 Feb 26;17(1):11. doi: 10.1186/s13100-026-00396-x. Mob DNA. 2026. PMID: 41749369 Free PMC article.

4

scTELL: a single-cell ATAC-seq tool for locus-specific transposable element identification in chromatin accessibility.

Jeong K, Ha H, Xing J, Choi J, Kim K. Jeong K, et al. Mob DNA. 2026 Feb 24;17(1):10. doi: 10.1186/s13100-026-00395-y. Mob DNA. 2026. PMID: 41731605 Free PMC article.

5

Boundary-associated propagation of a processed pseudogene dissects pre-existing limitations of genome annotation in the T2T era.

Lee MG. Lee MG. Mob DNA. 2026 Feb 17;17(1):9. doi: 10.1186/s13100-026-00394-z. Mob DNA. 2026. PMID: 41699652 Free PMC article.

6

Tracing ancient viral footprints: a comprehensive study of endogenous viral elements in Bombus species.

de Amorim Conceição LB, Santos JPN, Ferreira LYM, Rodrigues GVP, Costa MA, Aguiar ERGR. de Amorim Conceição LB, et al. Mob DNA. 2026 Feb 5;17(1):8. doi: 10.1186/s13100-026-00393-0. Mob DNA. 2026. PMID: 41645309 Free PMC article.

7

Report on the seventh Japanese meeting on biological function and evolution through interactions between hosts and transposable elements.

Ichiyanagi K, Ikeda Y, Saito K. Ichiyanagi K, et al. Mob DNA. 2026 Jan 30;17(1):6. doi: 10.1186/s13100-025-00392-7. Mob DNA. 2026. PMID: 41618403 Free PMC article.

8

Acute testicular hyperthermia leads to rapid loss of global piRNA and a concurrent increase in LINE1 activity within heat sensitive male germ cells.

Robinson BR, Netherton JK, Ogle RA, Burnard SM, Williams GE, Tennant GM, Hussein M, Lee HJ, Velkov T, Baker MA. Robinson BR, et al. Mob DNA. 2026 Jan 21;17(1):7. doi: 10.1186/s13100-025-00390-9. Mob DNA. 2026. PMID: 41566386 Free PMC article.

9

Expression of endogenous retroviral elements is associated with extracellular matrix remodeling in prostate cancer.

Williams EC, Mayarata DR, Horvath A, Chiappinelli KB, Shibata M. Williams EC, et al. Mob DNA. 2026 Jan 8;17(1):1. doi: 10.1186/s13100-025-00382-9. Mob DNA. 2026. PMID: 41508128 Free PMC article.

10

Transposable elements: a key piece in the genomic evolution and adaptation of Myrtaceae species.

Waschburger EL, Filgueiras JPC, Antoniolli HDRM, Deprá M, Guyot R, Turchetto-Zolet AC. Waschburger EL, et al. Mob DNA. 2025 Dec 20;16(1):48. doi: 10.1186/s13100-025-00388-3. Mob DNA. 2025. PMID: 41422053 Free PMC article.

11

Diverging transposon activity among polar bear sub-populations inhabiting different climate zones.

Godden AM, Rix BT, Immler S. Godden AM, et al. Mob DNA. 2025 Dec 12;16(1):47. doi: 10.1186/s13100-025-00387-4. Mob DNA. 2025. PMID: 41382233 Free PMC article.

12

Heat-induced transcriptional activation of LTR retrotransposons in the regenerative flatworm Macrostomum lignano.

Ustyantsev K, Mouton S, Stranges M, Biryukov M, Wudarski J, Glazenburg L, Berezikov E. Ustyantsev K, et al. Mob DNA. 2025 Dec 11;17(1):3. doi: 10.1186/s13100-025-00391-8. Mob DNA. 2025. PMID: 41382218 Free PMC article.

13

ColabCuraTE: an easy-to-use, web-based pipeline for the manual curation of transposable elements.

Travers SL, Khansa A, Ellison CE. Travers SL, et al. Mob DNA. 2025 Dec 10;17(1):2. doi: 10.1186/s13100-025-00389-2. Mob DNA. 2025. PMID: 41372941 Free PMC article.

14

Identification of novel regulators of LINE-1 expression via CRISPR/Cas9 screening.

Oksuz O, Chu C, Arisdakessian C, Diao L, Zaller D, Long KK, Keilhack H, Knutson S. Oksuz O, et al. Mob DNA. 2025 Dec 5;17(1):4. doi: 10.1186/s13100-025-00386-5. Mob DNA. 2025. PMID: 41351057 Free PMC article.

15

Liver-specific enhancers evolved from independent episodes of MITE domestication in Xenopus tropicalis.

Rojas J, Castillo H, Mundaca M, Fraga J, Gilbert C, Valdebenito-Maturana B, Marcellini S. Rojas J, et al. Mob DNA. 2025 Dec 4;16(1):46. doi: 10.1186/s13100-025-00384-7. Mob DNA. 2025. PMID: 41345881 Free PMC article.

16

Endogenous retroviruses in aging and cancer: from genomic defense to oncogenic activation.

Arantes Dos Santos G, Da Roz D'Alessandre N, Der Agopian Guardia G, Loch Batista R, A F Galante P. Arantes Dos Santos G, et al. Mob DNA. 2025 Dec 2;16(1):45. doi: 10.1186/s13100-025-00383-8. Mob DNA. 2025. PMID: 41331490 Free PMC article. Review.

17

TE-Seq: a transposable element annotation and RNA-Seq pipeline.

Kelsey MMG, Kalekar RL, Sedivy JM. Kelsey MMG, et al. Mob DNA. 2025 Nov 27;16(1):44. doi: 10.1186/s13100-025-00381-w. Mob DNA. 2025. PMID: 41310839 Free PMC article.

18

FoTeRs: a novel family of telomere-associated retrotransposons in Fusarium oxysporum.

Salimi S, Rahnama M. Salimi S, et al. Mob DNA. 2025 Nov 24;17(1):5. doi: 10.1186/s13100-025-00385-6. Mob DNA. 2025. PMID: 41287068 Free PMC article.

19

Plant MITEs: miniature transposable elements with major impacts.

Soundiramourtty A, Mirouze M. Soundiramourtty A, et al. Mob DNA. 2025 Nov 7;16(1):43. doi: 10.1186/s13100-025-00375-8. Mob DNA. 2025. PMID: 41204336 Free PMC article. Review.

20

Structural and transduction patterns of human-specific polymorphic SVA insertions.

Kirby AE, Loftus M, Golba EC; Human Genome Structural Variation Consortium; Konkel MK. Kirby AE, et al. Mob DNA. 2025 Nov 6;16(1):42. doi: 10.1186/s13100-025-00373-w. Mob DNA. 2025. PMID: 41199327 Free PMC article.

21

A specialized bacterial group II intron is a highly efficient retrotransposon.

Gomes L, Toffano-Nioche C, Gautheret D, Costa M. Gomes L, et al. Mob DNA. 2025 Nov 4;16(1):41. doi: 10.1186/s13100-025-00380-x. Mob DNA. 2025. PMID: 41188966 Free PMC article.

22

High interferon response signatures in SLE patient leukocytes are associated with increased transposable element expression in gene introns and intergenic regions.

Arteaga-Vazquez LJ, Sepulveda H, Villalobos Reveles B, Suzuki K, Kalunian KC, Ay F, Boothby MR, Rao A. Arteaga-Vazquez LJ, et al. Mob DNA. 2025 Nov 3;16(1):40. doi: 10.1186/s13100-025-00377-6. Mob DNA. 2025. PMID: 41184901 Free PMC article.

23

Antagonistic regulation of LINE-1/Alu elements and their repressor APOBEC3B in cellular senescence.

Munot D, Lu Y, Haußmann I, Najjar G, Baur C, Singh M, Günes C, Sauter D, Arora A. Munot D, et al. Mob DNA. 2025 Oct 21;16(1):39. doi: 10.1186/s13100-025-00378-5. Mob DNA. 2025. PMID: 41121401 Free PMC article.

24

Correction: A plan or pandemonium? The conundrum of retrotransposon activation in cancer.

Zueva E. Zueva E. Mob DNA. 2025 Oct 21;16(1):38. doi: 10.1186/s13100-025-00379-4. Mob DNA. 2025. PMID: 41121374 Free PMC article. No abstract available.

25

Strict retroelement regulation is frequently lost following cancer transformation and generates a promising reservoir of cancer biomarkers.

Russ E, Iordanskiy S. Russ E, et al. Mob DNA. 2025 Oct 3;16(1):37. doi: 10.1186/s13100-025-00376-7. Mob DNA. 2025. PMID: 41044661 Free PMC article.

26

Type I interferons increase expression of endogenous retrovirus K102 and envelope protein in myeloid cells from patients with autoimmune disease.

Le E, Moadab F, Wang X, Najjar R, Bays A, Hastie KM, Shek J, Saphire EO, Mustelin T. Le E, et al. Mob DNA. 2025 Sep 30;16(1):36. doi: 10.1186/s13100-025-00371-y. Mob DNA. 2025. PMID: 41029739 Free PMC article.

27

Gene and transposable element expression in response to stress in temperate and tropical populations of Drosophila.

Merenciano M, Oliveira DS, Salces-Ortiz J, Rebollo R, Manfré B, Menezes B, Krasovec G, Simonet C, Janillon S, Burlet N, Carareto CMA, Vieira C, Fablet M. Merenciano M, et al. Mob DNA. 2025 Sep 30;16(1):35. doi: 10.1186/s13100-025-00372-x. Mob DNA. 2025. PMID: 41029729 Free PMC article.

28

Comparative structural analysis of IS21 transposition complexes using Cryo-EM and AlphaFold3.

Spínola-Amilibia M, Rizzuto I, Arias-Palomo E. Spínola-Amilibia M, et al. Mob DNA. 2025 Sep 30;16(1):34. doi: 10.1186/s13100-025-00374-9. Mob DNA. 2025. PMID: 41029432 Free PMC article.

29

Transposable element dynamics in glioblastoma stem cells: insights from locus-specific quantification.

Pizzagalli MD, Suita Y, Leary OP, Tapinos N. Pizzagalli MD, et al. Mob DNA. 2025 Sep 2;16(1):33. doi: 10.1186/s13100-025-00370-z. Mob DNA. 2025. PMID: 40898284 Free PMC article.

30

Escherichia coli proteins uL29 and ACP stabilize the Tn7-encoded TnsD and its DNA binding.

Leyva Camacho SB, Matthews LA, Guarné A. Leyva Camacho SB, et al. Mob DNA. 2025 Aug 22;16(1):32. doi: 10.1186/s13100-025-00369-6. Mob DNA. 2025. PMID: 40847421 Free PMC article.

31

A plan or pandemonium? The conundrum of retrotransposon activation in cancer.

Zueva E. Zueva E. Mob DNA. 2025 Aug 9;16(1):31. doi: 10.1186/s13100-025-00368-7. Mob DNA. 2025. PMID: 40783740 Free PMC article. Review.

32

Locus-specific HERV expression associated with hepatocellular carcinoma.

Wen H, Pérez-Losada M, Mishra L, Crandall KA. Wen H, et al. Mob DNA. 2025 Jul 16;16(1):30. doi: 10.1186/s13100-025-00367-8. Mob DNA. 2025. PMID: 40671054 Free PMC article.

33

In-depth analysis of endogenous retrovirus expression in glioblastoma.

Murimi-Worstell DA, Murimi-Worstell IB, Roy FM, Burn A, Freeman M, Puchalski RB, Coffin JM. Murimi-Worstell DA, et al. Mob DNA. 2025 Jul 16;16(1):29. doi: 10.1186/s13100-025-00365-w. Mob DNA. 2025. PMID: 40671039 Free PMC article.

34

Exploring transposable elements: new horizons in cancer diagnostics and therapeutics.

Chaaban A, Sleem R, Santina J, Rima M, Ibrahim JN. Chaaban A, et al. Mob DNA. 2025 Jul 12;16(1):28. doi: 10.1186/s13100-025-00366-9. Mob DNA. 2025. PMID: 40646624 Free PMC article. Review.

35

Co-option of an endogenous retrovirus (LTR7-HERVH) in early human embryogenesis: becoming useful and going unnoticed.

Izsvák Z, Ma J, Singh M, Hurst LD. Izsvák Z, et al. Mob DNA. 2025 Jul 5;16(1):27. doi: 10.1186/s13100-025-00361-0. Mob DNA. 2025. PMID: 40618134 Free PMC article. Review.

36

Interaction with eukaryotic cells enhances the circularization and transcription of integrative and conjugative elements in Mycoplasma hominis.

Boureima Abdou B, Silvant A, Le Roy C, Guiraud J, Bientz L, Béven L, Dubois V, Baranowski E, Bébéar C, Pereyre S. Boureima Abdou B, et al. Mob DNA. 2025 Jul 4;16(1):26. doi: 10.1186/s13100-025-00364-x. Mob DNA. 2025. PMID: 40616119 Free PMC article.

37

The highly diverse repertoire of transposable elements within the genomes of parasitic wasps (Hymenoptera: Braconidae).

Behm RN, Sharanowski BJ. Behm RN, et al. Mob DNA. 2025 Jun 14;16(1):24. doi: 10.1186/s13100-025-00360-1. Mob DNA. 2025. PMID: 40517272 Free PMC article.

38

Double-stranded DNA viruses may serve as vectors for horizontal transfer of intron-generating transposons.

Gozashti L, Corbett-Detig R. Gozashti L, et al. Mob DNA. 2025 Jun 14;16(1):25. doi: 10.1186/s13100-025-00363-y. Mob DNA. 2025. PMID: 40517254 Free PMC article.

39

No evidence of transposable element bursts in the Galápagos Scalesia adaptive radiation despite hybridization, diversification and ecological niche shifts.

Cerca J, Díaz PJ, Goubert C, Yang H, Bieker VC, Fernández-Mazuecos M, Vargas P, Schley R, Li S, Guevara-Andino JE, Petersen B, Petersen G, Sinha NR, Nielsen LR, Leebens-Mack JH, Rivas-Torres G, Rieseberg LH, Martin MD. Cerca J, et al. Mob DNA. 2025 May 31;16(1):23. doi: 10.1186/s13100-025-00362-z. Mob DNA. 2025. PMID: 40450335 Free PMC article.

40

Binding of NF-Y to transposable elements in mouse and human cells.

Ronzio M, Bernardini A, Gallo A, Mantovani R, Dolfini D. Ronzio M, et al. Mob DNA. 2025 May 9;16(1):22. doi: 10.1186/s13100-025-00358-9. Mob DNA. 2025. PMID: 40346696 Free PMC article.

41

Compilation of all known HERV-K HML-2 proviral integrations.

Kyriakou E, Magiorkinis G. Kyriakou E, et al. Mob DNA. 2025 May 7;16(1):21. doi: 10.1186/s13100-025-00359-8. Mob DNA. 2025. PMID: 40336055 Free PMC article.

42

Structural features of somatic and germline retrotransposition events in humans.

Nummi P, Cajuso T, Norri T, Taira A, Kuisma H, Välimäki N, Lepistö A, Renkonen-Sinisalo L, Koskensalo S, Seppälä TT, Ristimäki A, Tahkola K, Mattila A, Böhm J, Mecklin JP, Siili E, Pasanen A, Heikinheimo O, Bützow R, Karhu A, Burns KH, Palin K, Aaltonen LA. Nummi P, et al. Mob DNA. 2025 Apr 22;16(1):20. doi: 10.1186/s13100-025-00357-w. Mob DNA. 2025. PMID: 40264183 Free PMC article.

43

Impact of a horizontally transferred Helitron family on genome evolution in Xenopus laevis.

Li Z, Pollet N. Li Z, et al. Mob DNA. 2025 Apr 16;16(1):19. doi: 10.1186/s13100-025-00356-x. Mob DNA. 2025. PMID: 40241130 Free PMC article.

44

Transposon expression and repression in skeletal muscle.

Borok MJ, Zaidan L, Relaix F. Borok MJ, et al. Mob DNA. 2025 Apr 11;16(1):18. doi: 10.1186/s13100-025-00352-1. Mob DNA. 2025. PMID: 40217332 Free PMC article. Review.

45

Transposable element dynamics in Xenopus laevis embryogenesis: a tale of two coexisting subgenomes.

Tittarelli E, Carotti E, Carducci F, Barucca M, Canapa A, Biscotti MA. Tittarelli E, et al. Mob DNA. 2025 Apr 9;16(1):17. doi: 10.1186/s13100-025-00350-3. Mob DNA. 2025. PMID: 40200366 Free PMC article.

46

REPrise: de novo interspersed repeat detection using inexact seeding.

Takeda A, Nonaka D, Imazu Y, Fukunaga T, Hamada M. Takeda A, et al. Mob DNA. 2025 Apr 3;16(1):16. doi: 10.1186/s13100-025-00353-0. Mob DNA. 2025. PMID: 40181468 Free PMC article.

47

Retand LTR-retrotransposons in plants: a long way from pol to 3'LTR.

Vicient CM. Vicient CM. Mob DNA. 2025 Apr 2;16(1):15. doi: 10.1186/s13100-025-00354-z. Mob DNA. 2025. PMID: 40176144 Free PMC article.

48

Subtelomeric repeat expansion in Hydractinia symbiolongicarpus chromosomes.

Kon T, Kon-Nanjo K, Simakov O. Kon T, et al. Mob DNA. 2025 Mar 25;16(1):14. doi: 10.1186/s13100-025-00355-y. Mob DNA. 2025. PMID: 40134021 Free PMC article.

49

IS26 carrying bla_KPC-2 mediates carbapenem resistance heterogeneity in extensively drug-resistant Klebsiella pneumoniae isolated from clinical sites.

Guo Z, Qin X, Yue M, Wu L, Li N, Su J, Jiang M. Guo Z, et al. Mob DNA. 2025 Mar 24;16(1):13. doi: 10.1186/s13100-025-00351-2. Mob DNA. 2025. PMID: 40128793 Free PMC article.

50

Association of a 7.9 kb Endogenous Retrovirus Insertion in Intron 1 of CD36 with Obesity and Fat Measurements in Sheep.

Saleh AA, Moawad AS, Yang N, Zheng Y, Chen C, Wang X, Gao B, Song C. Saleh AA, et al. Mob DNA. 2025 Mar 14;16(1):12. doi: 10.1186/s13100-025-00349-w. Mob DNA. 2025. PMID: 40087777 Free PMC article.

51

Further varieties of ancient endogenous retrovirus in human DNA.

Frith MC. Frith MC. Mob DNA. 2025 Mar 13;16(1):11. doi: 10.1186/s13100-025-00348-x. Mob DNA. 2025. PMID: 40083010 Free PMC article.

52

Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes.

Morales-Díaz N, Sushko S, Campos-Dominguez L, Kopalli V, Golicz AA, Castanera R, Casacuberta JM. Morales-Díaz N, et al. Mob DNA. 2025 Mar 12;16(1):10. doi: 10.1186/s13100-025-00347-y. Mob DNA. 2025. PMID: 40075446 Free PMC article.

53

Marine vs. terrestrial: links between the environment and the diversity of Copia retrotransposon in metazoans.

Klai K, Farhat S, Lamothe L, Higuet D, Bonnivard É. Klai K, et al. Mob DNA. 2025 Mar 8;16(1):9. doi: 10.1186/s13100-025-00346-z. Mob DNA. 2025. PMID: 40055832 Free PMC article.

54

Transposable elements in genomic architecture of Monilinia fungal phytopathogens and TE-driven DMI-resistance adaptation.

Durak MR, Özkılınç H. Durak MR, et al. Mob DNA. 2025 Mar 7;16(1):8. doi: 10.1186/s13100-025-00343-2. Mob DNA. 2025. PMID: 40055830 Free PMC article.

55

On the origin of the P-element invasion in Drosophila simulans.

Wierzbicki F, Pianezza R, Selvaraju D, Eller MM, Kofler R. Wierzbicki F, et al. Mob DNA. 2025 Feb 26;16(1):7. doi: 10.1186/s13100-025-00345-0. Mob DNA. 2025. PMID: 40011995 Free PMC article.

56

Alternative splicing of transposable elements in human breast cancer.

Nesta A, Veiga DFT, Banchereau J, Anczukow O, Beck CR. Nesta A, et al. Mob DNA. 2025 Feb 22;16(1):6. doi: 10.1186/s13100-025-00341-4. Mob DNA. 2025. PMID: 39987084 Free PMC article.

57

A family of Tn7-like transposons evolved to target CRISPR repeats.

Chacon Machado L, Peters JE. Chacon Machado L, et al. Mob DNA. 2025 Feb 18;16(1):5. doi: 10.1186/s13100-025-00344-1. Mob DNA. 2025. PMID: 39966887 Free PMC article.

58

A genome-wide study of ruminants uncovers two endogenous retrovirus families recently active in goats.

Verneret M, Leroux C, Faraut T, Navratil V, Lerat E, Turpin J. Verneret M, et al. Mob DNA. 2025 Feb 17;16(1):4. doi: 10.1186/s13100-024-00337-6. Mob DNA. 2025. PMID: 39962507 Free PMC article.

59

Targeted detection of endogenous LINE-1 proteins and ORF2p interactions.

Nielsen MI, Wolters JC, Bringas OGR, Jiang H, Di Stefano LH, Oghbaie M, Hozeifi S, Nitert MJ, van Pijkeren A, Smit M, Ter Morsche L, Mourtzinos A, Deshpande V, Taylor MS, Chait BT, LaCava J. Nielsen MI, et al. Mob DNA. 2025 Feb 6;16(1):3. doi: 10.1186/s13100-024-00339-4. Mob DNA. 2025. PMID: 39915890 Free PMC article.

60

FishPi: a bioinformatic prediction tool to link piRNA and transposable elements.

Godden AM, Rix B, Immler S. Godden AM, et al. Mob DNA. 2025 Jan 28;16(1):2. doi: 10.1186/s13100-025-00342-3. Mob DNA. 2025. PMID: 39871368 Free PMC article.

61

SINE retrotransposons import polyadenylation signals to 3'UTRs in dog (Canis familiaris).

Choi JD, Del Pinto LA, Sutter NB. Choi JD, et al. Mob DNA. 2025 Jan 4;16(1):1. doi: 10.1186/s13100-024-00338-5. Mob DNA. 2025. PMID: 39755632 Free PMC article.

62

Controlling and controlled elements: highlights of the year in mobile DNA research.

Arkhipova IR, Burns KH, Lesage P. Arkhipova IR, et al. Mob DNA. 2024 Dec 31;15(1):27. doi: 10.1186/s13100-024-00340-x. Mob DNA. 2024. PMID: 39741304 Free PMC article. No abstract available.

63

Analysis of pericentromere composition and structure elucidated the history of the Hieracium alpinum L. genome, revealing waves of transposable elements insertions.

Belyayev A, de la Peña BQ, Corrales SV, Ling Low S, Frejová B, Sejfová Z, Josefiová J, Záveská E, Bertrand YJK, Chrtek J, Mráz P. Belyayev A, et al. Mob DNA. 2024 Nov 15;15(1):26. doi: 10.1186/s13100-024-00336-7. Mob DNA. 2024. PMID: 39548580 Free PMC article.

64

International congress on transposable elements (ICTE 2024) in Saint Malo: breaking down transposon waves and their impact.

Lesage P, Brasset E, Cristofari G, Gilbert C, Mazel D, Rebollo R, Vitte C. Lesage P, et al. Mob DNA. 2024 Oct 26;15(1):25. doi: 10.1186/s13100-024-00334-9. Mob DNA. 2024. PMID: 39462418 Free PMC article.

65

Association of hyperactivated transposon expression with exacerbated immune activation in systemic lupus erythematosus.

Wang FQ, Dang X, Su H, Lei Y, She CH, Zhang C, Chen X, Yang X, Yang J, Feng H, Yang W. Wang FQ, et al. Mob DNA. 2024 Oct 19;15(1):23. doi: 10.1186/s13100-024-00335-8. Mob DNA. 2024. PMID: 39427224 Free PMC article.

66

Accelerating de novo SINE annotation in plant and animal genomes.

Liao H, Sun Y, Ou S. Liao H, et al. Mob DNA. 2024 Oct 19;15(1):24. doi: 10.1186/s13100-024-00331-y. Mob DNA. 2024. PMID: 39427206 Free PMC article.

67

Widespread HCD-tRNA derived SINEs in bivalves rely on multiple LINE partners and accumulate in genic regions.

Martelossi J, Iannello M, Ghiselli F, Luchetti A. Martelossi J, et al. Mob DNA. 2024 Oct 16;15(1):22. doi: 10.1186/s13100-024-00332-x. Mob DNA. 2024. PMID: 39415259 Free PMC article.

68

Correction: Transposon-derived introns as an element shaping the structure of eukaryotic genomes.

Mikina W, Hałakuc P, Milanowski R. Mikina W, et al. Mob DNA. 2024 Oct 12;15(1):21. doi: 10.1186/s13100-024-00329-6. Mob DNA. 2024. PMID: 39396035 Free PMC article. No abstract available.

69

Transposable Element (TE) insertion predictions from RNAseq inputs and TE impact on RNA splicing and gene expression in Drosophila brain transcriptomes.

Azad MF, Tong T, Lau NC. Azad MF, et al. Mob DNA. 2024 Oct 9;15(1):20. doi: 10.1186/s13100-024-00330-z. Mob DNA. 2024. PMID: 39385293 Free PMC article.

70

A T cell receptor specific for an HLA-A*03:01-restricted epitope in the endogenous retrovirus ERV-K-Env exhibits limited recognition of its cognate epitope.

Grundy EE, Shaw LC, Wang L, Lee AV, Argueta JC, Powell DJ Jr, Ostrowski M, Jones RB, Cruz CRY, Gordish-Dressman H, Chappell NP, Bollard CM, Chiappinelli KB. Grundy EE, et al. Mob DNA. 2024 Oct 9;15(1):19. doi: 10.1186/s13100-024-00333-w. Mob DNA. 2024. PMID: 39385229 Free PMC article.

71

Transposable elements in Drosophila montana from harsh cold environments.

Tahami MS, Vargas-Chavez C, Poikela N, Coronado-Zamora M, González J, Kankare M. Tahami MS, et al. Mob DNA. 2024 Oct 1;15(1):18. doi: 10.1186/s13100-024-00328-7. Mob DNA. 2024. PMID: 39354634 Free PMC article.

72

Identification and functional analysis of recent IS transposition events in rhizobia.

Mogro EG, Draghi WO, Lagares A, Lozano MJ. Mogro EG, et al. Mob DNA. 2024 Sep 5;15(1):17. doi: 10.1186/s13100-024-00327-8. Mob DNA. 2024. PMID: 39237951 Free PMC article.

73

Evolution of Einkorn wheat centromeres is driven by the mutualistic interplay of two LTR retrotransposons.

Heuberger M, Koo DH, Ahmed HI, Tiwari VK, Abrouk M, Poland J, Krattinger SG, Wicker T. Heuberger M, et al. Mob DNA. 2024 Aug 5;15(1):16. doi: 10.1186/s13100-024-00326-9. Mob DNA. 2024. PMID: 39103880 Free PMC article.

74

Transposon-derived introns as an element shaping the structure of eukaryotic genomes.

Mikina W, Hałakuc P, Milanowski R. Mikina W, et al. Mob DNA. 2024 Jul 27;15(1):15. doi: 10.1186/s13100-024-00325-w. Mob DNA. 2024. PMID: 39068498 Free PMC article. Review.

75

Subcellular location of L1 retrotransposon-encoded ORF1p, reverse transcription products, and DNA sensors in lupus granulocytes.

Moadab F, Sohrabi S, Wang X, Najjar R, Wolters JC, Jiang H, Miao W, Romero D, Zaller DM, Tran M, Bays A, Taylor MS, Kapeller R, LaCava J, Mustelin T. Moadab F, et al. Mob DNA. 2024 Jun 27;15(1):14. doi: 10.1186/s13100-024-00324-x. Mob DNA. 2024. PMID: 38937837 Free PMC article.

76

Identification of transposable element families from pangenome polymorphisms.

Sierra P, Durbin R. Sierra P, et al. Mob DNA. 2024 Jun 26;15(1):13. doi: 10.1186/s13100-024-00323-y. Mob DNA. 2024. PMID: 38926873 Free PMC article.

77

Internal initiation of reverse transcription in a Penelope-like retrotransposon.

Frangieh CJ, Wilkinson ME, Strebinger D, Strecker J, Walsh ML, Faure G, Yushenova IA, Macrae RK, Arkhipova IR, Zhang F. Frangieh CJ, et al. Mob DNA. 2024 Jun 11;15(1):12. doi: 10.1186/s13100-024-00322-z. Mob DNA. 2024. PMID: 38863000 Free PMC article.

78

Insertion of short L1 sequences generates inter-strain histone acetylation differences in the mouse.

Boyboy BAG, Ichiyanagi K. Boyboy BAG, et al. Mob DNA. 2024 May 10;15(1):11. doi: 10.1186/s13100-024-00321-0. Mob DNA. 2024. PMID: 38730323 Free PMC article.

79

Teaching transposon classification as a means to crowd source the curation of repeat annotation - a tardigrade perspective.

Peona V, Martelossi J, Almojil D, Bocharkina J, Brännström I, Brown M, Cang A, Carrasco-Valenzuela T, DeVries J, Doellman M, Elsner D, Espíndola-Hernández P, Montoya GF, Gaspar B, Zagorski D, Hałakuc P, Ivanovska B, Laumer C, Lehmann R, Boštjančić LL, Mashoodh R, Mazzoleni S, Mouton A, Nilsson MA, Pei Y, Potente G, Provataris P, Pardos-Blas JR, Raut R, Sbaffi T, Schwarz F, Stapley J, Stevens L, Sultana N, Symonova R, Tahami MS, Urzì A, Yang H, Yusuf A, Pecoraro C, Suh A. Peona V, et al. Mob DNA. 2024 May 6;15(1):10. doi: 10.1186/s13100-024-00319-8. Mob DNA. 2024. PMID: 38711146 Free PMC article.

80

Long-read sequencing improves the genetic diagnosis of retinitis pigmentosa by identifying an Alu retrotransposon insertion in the EYS gene.

Fernández-Suárez E, González-Del Pozo M, Méndez-Vidal C, Martín-Sánchez M, Mena M, de la Morena-Barrio B, Corral J, Borrego S, Antiñolo G. Fernández-Suárez E, et al. Mob DNA. 2024 May 4;15(1):9. doi: 10.1186/s13100-024-00320-1. Mob DNA. 2024. PMID: 38704576 Free PMC article.

81

Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats.

Garza AB, Lerat E, Girgis HZ. Garza AB, et al. Mob DNA. 2024 Apr 16;15(1):8. doi: 10.1186/s13100-024-00317-w. Mob DNA. 2024. PMID: 38627766 Free PMC article.

82

Multiple horizontal transfer events of a DNA transposon into turtles, fishes, and a frog.

Hassan NT, Galbraith JD, Adelson DL. Hassan NT, et al. Mob DNA. 2024 Apr 11;15(1):7. doi: 10.1186/s13100-024-00318-9. Mob DNA. 2024. PMID: 38605364 Free PMC article.

83

RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats.

Choudalakis M, Bashtrykov P, Jeltsch A. Choudalakis M, et al. Mob DNA. 2024 Apr 3;15(1):6. doi: 10.1186/s13100-024-00315-y. Mob DNA. 2024. PMID: 38570859 Free PMC article.

84

Orthoptera-TElib: a library of Orthoptera transposable elements for TE annotation.

Liu X, Zhao L, Majid M, Huang Y. Liu X, et al. Mob DNA. 2024 Mar 15;15(1):5. doi: 10.1186/s13100-024-00316-x. Mob DNA. 2024. PMID: 38486291 Free PMC article.

85

The role of Smarcad1 in retroviral repression in mouse embryonic stem cells.

Bren I, Tal A, Strauss C, Schlesinger S. Bren I, et al. Mob DNA. 2024 Mar 11;15(1):4. doi: 10.1186/s13100-024-00314-z. Mob DNA. 2024. PMID: 38468276 Free PMC article.

86

CRISPR-TE: a web-based tool to generate single guide RNAs targeting transposable elements.

Guo Y, Xue Z, Gong M, Jin S, Wu X, Liu W. Guo Y, et al. Mob DNA. 2024 Feb 1;15(1):3. doi: 10.1186/s13100-024-00313-0. Mob DNA. 2024. PMID: 38303094 Free PMC article.

87

A systematic screen for co-option of transposable elements across the fungal kingdom.

Oggenfuss U, Badet T, Croll D. Oggenfuss U, et al. Mob DNA. 2024 Jan 20;15(1):2. doi: 10.1186/s13100-024-00312-1. Mob DNA. 2024. PMID: 38245743 Free PMC article.

88

Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations.

Westerberg I, Ament-Velásquez SL, Vogan AA, Johannesson H. Westerberg I, et al. Mob DNA. 2024 Jan 13;15(1):1. doi: 10.1186/s13100-023-00311-8. Mob DNA. 2024. PMID: 38218923 Free PMC article.

89

The sixth Japanese meeting on biological function and evolution through interactions between hosts and transposable elements.

Ichiyanagi K, Ikeda Y, Saito K. Ichiyanagi K, et al. Mob DNA. 2023 Dec 12;14(1):22. doi: 10.1186/s13100-023-00310-9. Mob DNA. 2023. PMID: 38087291 Free PMC article.

90

SINE-derived satellites in scaled reptiles.

Vassetzky NS, Kosushkin SA, Ryskov AP. Vassetzky NS, et al. Mob DNA. 2023 Dec 7;14(1):21. doi: 10.1186/s13100-023-00309-2. Mob DNA. 2023. PMID: 38062513 Free PMC article.

91

An intronic LINE-1 regulates IFNAR1 expression in human immune cells.

Buttler CA, Ramirez D, Dowell RD, Chuong EB. Buttler CA, et al. Mob DNA. 2023 Nov 30;14(1):20. doi: 10.1186/s13100-023-00308-3. Mob DNA. 2023. PMID: 38037122 Free PMC article.

92

Meeting report: transposable elements at the crossroads of evolution, health and disease 2023.

Arkhipova IR, Burns KH, Chiappinelli KB, Chuong EB, Goubert C, Guarné A, Larracuente AM, Lee EA, Levin HL. Arkhipova IR, et al. Mob DNA. 2023 Nov 27;14(1):19. doi: 10.1186/s13100-023-00307-4. Mob DNA. 2023. PMID: 38012685 Free PMC article.

93

Proceedings of the inaugural Dark Genome Symposium: November 2022.

Boeke JD, Burns KH, Chiappinelli KB, Classon M, Coffin JM, DeCarvalho DD, Dukes JD, Greenbaum B, Kassiotis G, Knutson SK, Levine AJ, Nath A, Papa S, Rios D, Sedivy J, Ting DT. Boeke JD, et al. Mob DNA. 2023 Nov 21;14(1):18. doi: 10.1186/s13100-023-00306-5. Mob DNA. 2023. PMID: 37990347 Free PMC article.

94

Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen.

Qian J, Ibrahim HMM, Erz M, Kümmel F, Panstruga R, Kusch S. Qian J, et al. Mob DNA. 2023 Nov 15;14(1):17. doi: 10.1186/s13100-023-00305-6. Mob DNA. 2023. PMID: 37964319 Free PMC article.

95

Co-expression of distinct L1 retrotransposon coiled coils can lead to their entanglement.

Mizgier NA, Jones CE, Furano AV. Mizgier NA, et al. Mob DNA. 2023 Oct 20;14(1):16. doi: 10.1186/s13100-023-00303-8. Mob DNA. 2023. PMID: 37864180 Free PMC article.

96

Plants acquired mitochondrial linear plasmids horizontally from fungi likely during the conquest of land.

Wei Y, Gong Z, Han GZ. Wei Y, et al. Mob DNA. 2023 Oct 17;14(1):15. doi: 10.1186/s13100-023-00304-7. Mob DNA. 2023. PMID: 37849012 Free PMC article.

97

Teleost genomic repeat landscapes in light of diversification rates and ecology.

Reinar WB, Tørresen OK, Nederbragt AJ, Matschiner M, Jentoft S, Jakobsen KS. Reinar WB, et al. Mob DNA. 2023 Oct 3;14(1):14. doi: 10.1186/s13100-023-00302-9. Mob DNA. 2023. PMID: 37789366 Free PMC article.

98

Pan cancer characterization of genes whose expression has been associated with LINE-1 antisense promoter activity.

Xu B, Li X, Zhang S, Lian M, Huang W, Zhang Y, Wang Y, Huang Z. Xu B, et al. Mob DNA. 2023 Sep 18;14(1):13. doi: 10.1186/s13100-023-00300-x. Mob DNA. 2023. PMID: 37723560 Free PMC article.

99

Retro-miRs: novel and functional miRNAs originating from mRNA retrotransposition.

Mercuri RLV, Conceição HB, Guardia GDA, Goldstein G, Vibranovski MD, Hinske LC, Galante PAF. Mercuri RLV, et al. Mob DNA. 2023 Sep 8;14(1):12. doi: 10.1186/s13100-023-00301-w. Mob DNA. 2023. PMID: 37684690 Free PMC article.

100

SARS-CoV-2 infection induces epigenetic changes in the LTR69 subfamily of endogenous retroviruses.

Arora A, Kolberg JE, Srinivasachar Badarinarayan S, Savytska N, Munot D, Müller M, Krchlíková V, Sauter D, Bansal V. Arora A, et al. Mob DNA. 2023 Sep 4;14(1):11. doi: 10.1186/s13100-023-00299-1. Mob DNA. 2023. PMID: 37667401 Free PMC article.

101

Themes and variations on piRNA-guided transposon control.

Loubalova Z, Konstantinidou P, Haase AD. Loubalova Z, et al. Mob DNA. 2023 Sep 2;14(1):10. doi: 10.1186/s13100-023-00298-2. Mob DNA. 2023. PMID: 37660099 Free PMC article. Review.

102

Transposable elements as essential elements in the control of gene expression.

Gebrie A. Gebrie A. Mob DNA. 2023 Aug 18;14(1):9. doi: 10.1186/s13100-023-00297-3. Mob DNA. 2023. PMID: 37596675 Free PMC article. Review.

103

Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast.

Chen J, Basting PJ, Han S, Garfinkel DJ, Bergman CM. Chen J, et al. Mob DNA. 2023 Jul 14;14(1):8. doi: 10.1186/s13100-023-00296-4. Mob DNA. 2023. PMID: 37452430 Free PMC article.

104

Host range of strand-biased circularizing integrative elements: a new class of mobile DNA elements nesting in Gammaproteobacteria.

Idola D, Mori H, Nagata Y, Nonaka L, Yano H. Idola D, et al. Mob DNA. 2023 May 26;14(1):7. doi: 10.1186/s13100-023-00295-5. Mob DNA. 2023. PMID: 37237359 Free PMC article.

105

THE1B may have no role in human pregnancy due to ZNF430-mediated silencing.

Zuo Z. Zuo Z. Mob DNA. 2023 May 22;14(1):6. doi: 10.1186/s13100-023-00294-6. Mob DNA. 2023. PMID: 37217947 Free PMC article.

106

Expression of L1 retrotransposons in granulocytes from patients with active systemic lupus erythematosus.

Ukadike KC, Najjar R, Ni K, Laine A, Wang X, Bays A, Taylor MS, LaCava J, Mustelin T. Ukadike KC, et al. Mob DNA. 2023 May 10;14(1):5. doi: 10.1186/s13100-023-00293-7. Mob DNA. 2023. PMID: 37165451 Free PMC article.

107

Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea.

Tran TQ, Park M, Lee JE, Kim SH, Jeong JH, Choy HE. Tran TQ, et al. Mob DNA. 2023 Apr 24;14(1):4. doi: 10.1186/s13100-023-00292-8. Mob DNA. 2023. PMID: 37095552 Free PMC article.

108

Telomeric retrotransposons show propensity to form G-quadruplexes in various eukaryotic species.

Jedlička P, Tokan V, Kejnovská I, Hobza R, Kejnovský E. Jedlička P, et al. Mob DNA. 2023 Apr 10;14(1):3. doi: 10.1186/s13100-023-00291-9. Mob DNA. 2023. PMID: 37038191 Free PMC article.

109

Expression of down-regulated ERV LTR elements associates with immune activation in human small-cell lung cancers.

Russo M, Morelli S, Capranico G. Russo M, et al. Mob DNA. 2023 Mar 14;14(1):2. doi: 10.1186/s13100-023-00290-w. Mob DNA. 2023. PMID: 36918931 Free PMC article.

110

Mobility of mPing and its associated elements is regulated by both internal and terminal sequences.

Redd PS, Diaz S, Weidner D, Benjamin J, Hancock CN. Redd PS, et al. Mob DNA. 2023 Feb 11;14(1):1. doi: 10.1186/s13100-023-00289-3. Mob DNA. 2023. PMID: 36774502 Free PMC article.

111

CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes.

Vassilieff H, Haddad S, Jamilloux V, Choisne N, Sharma V, Giraud D, Wan M, Serfraz S, Geering ADW, Teycheney PY, Maumus F. Vassilieff H, et al. Mob DNA. 2022 Dec 3;13(1):31. doi: 10.1186/s13100-022-00288-w. Mob DNA. 2022. PMID: 36463202 Free PMC article.

112

Generalized nuclear localization of retroelement transcripts.

Das S, Jones AE, Abrams JM. Das S, et al. Mob DNA. 2022 Dec 2;13(1):30. doi: 10.1186/s13100-022-00287-x. Mob DNA. 2022. PMID: 36461093 Free PMC article.

113

T3E: a tool for characterising the epigenetic profile of transposable elements using ChIP-seq data.

Almeida da Paz M, Taher L. Almeida da Paz M, et al. Mob DNA. 2022 Nov 30;13(1):29. doi: 10.1186/s13100-022-00285-z. Mob DNA. 2022. PMID: 36451223 Free PMC article.

114

Recurrent co-domestication of PIF/Harbinger transposable element proteins in insects.

Markova DN, Ruma FB, Casola C, Mirsalehi A, Betrán E. Markova DN, et al. Mob DNA. 2022 Nov 30;13(1):28. doi: 10.1186/s13100-022-00282-2. Mob DNA. 2022. PMID: 36451208 Free PMC article.

115

The coevolution between APOBEC3 and retrotransposons in primates.

Modenini G, Abondio P, Boattini A. Modenini G, et al. Mob DNA. 2022 Nov 29;13(1):27. doi: 10.1186/s13100-022-00283-1. Mob DNA. 2022. PMID: 36443831 Free PMC article. Review.

116

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition.

Barkova A, Adhya I, Conesa C, Asif-Laidin A, Bonnet A, Rabut E, Chagneau C, Lesage P, Acker J. Barkova A, et al. Mob DNA. 2022 Nov 18;13(1):26. doi: 10.1186/s13100-022-00284-0. Mob DNA. 2022. PMID: 36401307 Free PMC article.

117

Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Cas9.

Zhang Y, He F, Zhang Y, Dai Q, Li Q, Nan J, Miao R, Cheng B. Zhang Y, et al. Mob DNA. 2022 Nov 10;13(1):25. doi: 10.1186/s13100-022-00279-x. Mob DNA. 2022. PMID: 36357895 Free PMC article.

118

A unique eukaryotic lineage of composite-like DNA transposons encoding a DDD/E transposase and a His-Me finger homing endonuclease.

Kojima KK, Bao W. Kojima KK, et al. Mob DNA. 2022 Oct 22;13(1):24. doi: 10.1186/s13100-022-00281-3. Mob DNA. 2022. PMID: 36273192 Free PMC article.

119

Mobile group I introns at nuclear rDNA position L2066 harbor sense and antisense homing endonuclease genes intervened by spliceosomal introns.

Lian K, Furulund BMN, Tveita AA, Haugen P, Johansen SD. Lian K, et al. Mob DNA. 2022 Oct 8;13(1):23. doi: 10.1186/s13100-022-00280-4. Mob DNA. 2022. PMID: 36209098 Free PMC article.

120

Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells.

Pasquesi GIM, Kelly CJ, Ordonez AD, Chuong EB. Pasquesi GIM, et al. Mob DNA. 2022 Sep 6;13(1):22. doi: 10.1186/s13100-022-00277-z. Mob DNA. 2022. PMID: 36068622 Free PMC article.

121

SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution.

Stow EC, Baddoo M, LaRosa AJ, LaCoste D, Deininger P, Belancio V. Stow EC, et al. Mob DNA. 2022 Aug 26;13(1):21. doi: 10.1186/s13100-022-00276-0. Mob DNA. 2022. PMID: 36028901 Free PMC article.

122

Multiple horizontal transfers of a Helitron transposon associated with a parasitoid wasp.

Heringer P, Kuhn GCS. Heringer P, et al. Mob DNA. 2022 Aug 19;13(1):20. doi: 10.1186/s13100-022-00278-y. Mob DNA. 2022. PMID: 35982491 Free PMC article.

123

Genomic analysis reveals the role of integrative and conjugative elements in plant pathogenic bacteria.

de Assis JCS, Gonçalves OS, Fernandes AS, de Queiroz MV, Bazzolli DMS, Santana MF. de Assis JCS, et al. Mob DNA. 2022 Aug 12;13(1):19. doi: 10.1186/s13100-022-00275-1. Mob DNA. 2022. PMID: 35962419 Free PMC article.

124

Amplification of LTRs of extrachromosomal linear DNAs (ALE-seq) identifies two active Oryco LTR retrotransposons in the rice cultivar Dongjin.

Koo H, Kim S, Park HS, Lee SJ, Paek NC, Cho J, Yang TJ. Koo H, et al. Mob DNA. 2022 Jun 13;13(1):18. doi: 10.1186/s13100-022-00274-2. Mob DNA. 2022. PMID: 35698176 Free PMC article.

125

Correction: Characterization of transposable elements within the Bemisia tabaci species complex.

Sicat JPA, Visendi P, Sewe SO, Bouvaine S, Seal SE. Sicat JPA, et al. Mob DNA. 2022 Jun 8;13(1):17. doi: 10.1186/s13100-022-00273-3. Mob DNA. 2022. PMID: 35676682 Free PMC article. No abstract available.

126

Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model species reveal the prerequisites for transcriptional activation of autonomous and non-autonomous transposons in plants.

Chen TH, Winefield C. Chen TH, et al. Mob DNA. 2022 May 12;13(1):16. doi: 10.1186/s13100-022-00271-5. Mob DNA. 2022. PMID: 35549762 Free PMC article.

127

Correction: A beginner's guide to manual curation of transposable elements.

Goubert C, Craig RJ, Bilat AF, Peona V, Vogan AA, Protasio AV. Goubert C, et al. Mob DNA. 2022 May 4;13(1):15. doi: 10.1186/s13100-022-00272-4. Mob DNA. 2022. PMID: 35509054 Free PMC article. No abstract available.

128

Software evaluation for de novo detection of transposons.

Rodriguez M, Makałowski W. Rodriguez M, et al. Mob DNA. 2022 Apr 27;13(1):14. doi: 10.1186/s13100-022-00266-2. Mob DNA. 2022. PMID: 35477485 Free PMC article.

129

Subfamily-specific differential contribution of individual monomers and the tether sequence to mouse L1 promoter activity.

Kong L, Saha K, Hu Y, Tschetter JN, Habben CE, Whitmore LS, Yao C, Ge X, Ye P, Newkirk SJ, An W. Kong L, et al. Mob DNA. 2022 Apr 20;13(1):13. doi: 10.1186/s13100-022-00269-z. Mob DNA. 2022. PMID: 35443687 Free PMC article.

130

Characterization of transposable elements within the Bemisia tabaci species complex.

Sicat JPA, Visendi P, Sewe SO, Bouvaine S, Seal SE. Sicat JPA, et al. Mob DNA. 2022 Apr 19;13(1):12. doi: 10.1186/s13100-022-00270-6. Mob DNA. 2022. PMID: 35440097 Free PMC article.

131

RNA sensor MDA5 suppresses LINE-1 retrotransposition by regulating the promoter activity of LINE-1 5'-UTR.

Yan J, Zhao Y, Du J, Wang Y, Wang S, Wang Q, Zhao X, Xu W, Zhao K. Yan J, et al. Mob DNA. 2022 Apr 12;13(1):10. doi: 10.1186/s13100-022-00268-0. Mob DNA. 2022. PMID: 35414110 Free PMC article.

132

TE Density: a tool to investigate the biology of transposable elements.

Teresi SJ, Teresi MB, Edger PP. Teresi SJ, et al. Mob DNA. 2022 Apr 12;13(1):11. doi: 10.1186/s13100-022-00264-4. Mob DNA. 2022. PMID: 35413944 Free PMC article.

133

SETMAR, a case of primate co-opted genes: towards new perspectives.

Lié O, Renault S, Augé-Gouillou C. Lié O, et al. Mob DNA. 2022 Apr 8;13(1):9. doi: 10.1186/s13100-022-00267-1. Mob DNA. 2022. PMID: 35395947 Free PMC article. Review.

134

The structural diversity of CACTA transposons in genomes of Chenopodium (Amaranthaceae, Caryophyllales) species: specific traits and comparison with the similar elements of angiosperms.

Belyayev A, Josefiová J, Jandová M, Kalendar R, Mahelka V, Mandák B, Krak K. Belyayev A, et al. Mob DNA. 2022 Apr 4;13(1):8. doi: 10.1186/s13100-022-00265-3. Mob DNA. 2022. PMID: 35379321 Free PMC article.

135

A beginner's guide to manual curation of transposable elements.

Goubert C, Craig RJ, Bilat AF, Peona V, Vogan AA, Protasio AV. Goubert C, et al. Mob DNA. 2022 Mar 30;13(1):7. doi: 10.1186/s13100-021-00259-7. Mob DNA. 2022. PMID: 35354491 Free PMC article.

136

Eco-evolutionary significance of domesticated retroelements in microbial genomes.

Paul BG, Eren AM. Paul BG, et al. Mob DNA. 2022 Feb 23;13(1):6. doi: 10.1186/s13100-022-00262-6. Mob DNA. 2022. PMID: 35197094 Free PMC article. Review.

137

Migrators within migrators: exploring transposable element dynamics in the monarch butterfly, Danaus plexippus.

Baril T, Hayward A. Baril T, et al. Mob DNA. 2022 Feb 16;13(1):5. doi: 10.1186/s13100-022-00263-5. Mob DNA. 2022. PMID: 35172896 Free PMC article.

138

KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences.

Iouranova A, Grun D, Rossy T, Duc J, Coudray A, Imbeault M, de Tribolet-Hardy J, Turelli P, Persat A, Trono D. Iouranova A, et al. Mob DNA. 2022 Jan 18;13(1):4. doi: 10.1186/s13100-021-00260-0. Mob DNA. 2022. PMID: 35042549 Free PMC article.

139

The fifth Japanese meeting on biological function and evolution through interactions between hosts and transposable elements.

Ichiyanagi K, Saito K. Ichiyanagi K, et al. Mob DNA. 2022 Jan 13;13(1):3. doi: 10.1186/s13100-022-00261-7. Mob DNA. 2022. PMID: 35027075 Free PMC article.

140

Response from Varani et al. to "Comment on 'the IS6 family, a clinically important group of insertion sequences including IS26' by Ruth M. Hall".

Varani A, He S, Siguier P, Ross K, Chandler M. Varani A, et al. Mob DNA. 2022 Jan 3;13(1):2. doi: 10.1186/s13100-021-00258-8. Mob DNA. 2022. PMID: 34980261 Free PMC article.

141

Comment on "the IS6 family, a clinically important group of insertion sequences including IS26" by Varani and co-authors.

Hall RM. Hall RM. Mob DNA. 2022 Jan 3;13(1):1. doi: 10.1186/s13100-021-00257-9. Mob DNA. 2022. PMID: 34980247 Free PMC article.

142

Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder.

Borges-Monroy R, Chu C, Dias C, Choi J, Lee S, Gao Y, Shin T, Park PJ, Walsh CA, Lee EA. Borges-Monroy R, et al. Mob DNA. 2021 Nov 27;12(1):28. doi: 10.1186/s13100-021-00256-w. Mob DNA. 2021. PMID: 34838103 Free PMC article.

143

Population analysis of retrotransposons in giraffe genomes supports RTE decline and widespread LINE1 activity in Giraffidae.

Petersen M, Winter S, Coimbra R, J de Jong M, Kapitonov VV, Nilsson MA. Petersen M, et al. Mob DNA. 2021 Nov 26;12(1):27. doi: 10.1186/s13100-021-00254-y. Mob DNA. 2021. PMID: 34836553 Free PMC article.

144

A comparative analysis of L1 retrotransposition activities in human genomes suggests an ongoing increase in L1 number despite an evolutionary trend towards lower activity.

Wehbi SS, Zu Dohna H. Wehbi SS, et al. Mob DNA. 2021 Nov 15;12(1):26. doi: 10.1186/s13100-021-00255-x. Mob DNA. 2021. PMID: 34782009 Free PMC article.

145

Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element (ICE).

Santoro F, Fox V, Romeo A, Lazzeri E, Pozzi G, Iannelli F. Santoro F, et al. Mob DNA. 2021 Nov 5;12(1):25. doi: 10.1186/s13100-021-00253-z. Mob DNA. 2021. PMID: 34740368 Free PMC article.

146

Comparative genomic and transcriptomic analyses of transposable elements in polychaetous annelids highlight LTR retrotransposon diversity and evolution.

Filée J, Farhat S, Higuet D, Teysset L, Marie D, Thomas-Bulle C, Hourdez S, Jollivet D, Bonnivard E. Filée J, et al. Mob DNA. 2021 Oct 29;12(1):24. doi: 10.1186/s13100-021-00252-0. Mob DNA. 2021. PMID: 34715903 Free PMC article.

147

Differential regulation of transposable elements (TEs) during the murine submandibular gland development.

Valdebenito-Maturana B, Torres F, Carrasco M, Tapia JC. Valdebenito-Maturana B, et al. Mob DNA. 2021 Oct 22;12(1):23. doi: 10.1186/s13100-021-00251-1. Mob DNA. 2021. PMID: 34686213 Free PMC article.

148

Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans.

Wang Y, Zhao B, Choi J, Lee EA. Wang Y, et al. Mob DNA. 2021 Oct 18;12(1):22. doi: 10.1186/s13100-021-00250-2. Mob DNA. 2021. PMID: 34663455 Free PMC article. Review.

149

Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas9.

Briggs EM, Mita P, Sun X, Ha S, Vasilyev N, Leopold ZR, Nudler E, Boeke JD, Logan SK. Briggs EM, et al. Mob DNA. 2021 Aug 23;12(1):21. doi: 10.1186/s13100-021-00249-9. Mob DNA. 2021. PMID: 34425899 Free PMC article.

150

A 192 bp ERV fragment insertion in the first intron of porcine TLR6 may act as an enhancer associated with the increased expressions of TLR6 and TLR1.

Wang X, Chen Z, Murani E, D'Alessandro E, An Y, Chen C, Li K, Galeano G, Wimmers K, Song C. Wang X, et al. Mob DNA. 2021 Aug 18;12(1):20. doi: 10.1186/s13100-021-00248-w. Mob DNA. 2021. PMID: 34407874 Free PMC article.

151

Correction to: Upregulation of selected HERVW loci in multiple sclerosis.

Macías-Redondo S, Strunk M, Cebollada-Solanas A, Ara JR, Martín J, Schoorlemmer J. Macías-Redondo S, et al. Mob DNA. 2021 Aug 11;12(1):19. doi: 10.1186/s13100-021-00247-x. Mob DNA. 2021. PMID: 34380560 Free PMC article. No abstract available.

152

Upregulation of selected HERVW loci in multiple sclerosis.

Macías-Redondo S, Strunk M, Cebollada-Solanas A, Ara JR, Martín J, Schoorlemmer J. Macías-Redondo S, et al. Mob DNA. 2021 Jun 29;12(1):18. doi: 10.1186/s13100-021-00243-1. Mob DNA. 2021. PMID: 34187540 Free PMC article. No abstract available.

153

SINE jumping contributes to large-scale polymorphisms in the pig genomes.

Chen C, D'Alessandro E, Murani E, Zheng Y, Giosa D, Yang N, Wang X, Gao B, Li K, Wimmers K, Song C. Chen C, et al. Mob DNA. 2021 Jun 28;12(1):17. doi: 10.1186/s13100-021-00246-y. Mob DNA. 2021. PMID: 34183049 Free PMC article.

154

TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation.

TE Hub Consortium; Elliott TA, Heitkam T, Hubley R, Quesneville H, Suh A, Wheeler TJ. TE Hub Consortium, et al. Mob DNA. 2021 Jun 21;12(1):16. doi: 10.1186/s13100-021-00244-0. Mob DNA. 2021. PMID: 34154643 Free PMC article.

155

melRNA-seq for Expression Analysis of SINE RNAs and Other Medium-Length Non-Coding RNAs.

Mori Y, Ichiyanagi K. Mori Y, et al. Mob DNA. 2021 Jun 16;12(1):15. doi: 10.1186/s13100-021-00245-z. Mob DNA. 2021. PMID: 34134767 Free PMC article.

156

The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis.

Rostami MR, Bradic M. Rostami MR, et al. Mob DNA. 2021 Jun 9;12(1):14. doi: 10.1186/s13100-021-00241-3. Mob DNA. 2021. PMID: 34108012 Free PMC article.

157

Unbiased profiling of CRISPR RNA-guided transposition products by long-read sequencing.

Vo PLH, Acree C, Smith ML, Sternberg SH. Vo PLH, et al. Mob DNA. 2021 Jun 8;12(1):13. doi: 10.1186/s13100-021-00242-2. Mob DNA. 2021. PMID: 34103093 Free PMC article.

158

The unusual structure of the PiggyMac cysteine-rich domain reveals zinc finger diversity in PiggyBac-related transposases.

Guérineau M, Bessa L, Moriau S, Lescop E, Bontems F, Mathy N, Guittet E, Bischerour J, Bétermier M, Morellet N. Guérineau M, et al. Mob DNA. 2021 Apr 29;12(1):12. doi: 10.1186/s13100-021-00240-4. Mob DNA. 2021. PMID: 33926516 Free PMC article.

159

The IS6 family, a clinically important group of insertion sequences including IS26.

Varani A, He S, Siguier P, Ross K, Chandler M. Varani A, et al. Mob DNA. 2021 Mar 23;12(1):11. doi: 10.1186/s13100-021-00239-x. Mob DNA. 2021. PMID: 33757578 Free PMC article. Review.

160

New Ther1-derived SINE Squam3 in scaled reptiles.

Vassetzky NS, Kosushkin SA, Korchagin VI, Ryskov AP. Vassetzky NS, et al. Mob DNA. 2021 Mar 22;12(1):10. doi: 10.1186/s13100-021-00238-y. Mob DNA. 2021. PMID: 33752750 Free PMC article.

161

Methylation of rRNA as a host defense against rampant group II intron retrotransposition.

Waldern JM, Smith D, Piazza CL, Bailey EJ, Schiraldi NJ, Nemati R, Fabris D, Belfort M, Novikova O. Waldern JM, et al. Mob DNA. 2021 Mar 7;12(1):9. doi: 10.1186/s13100-021-00237-z. Mob DNA. 2021. PMID: 33678171 Free PMC article.

162

The association of group IIB intron with integrons in hypersaline environments.

Sonbol S, Siam R. Sonbol S, et al. Mob DNA. 2021 Mar 1;12(1):8. doi: 10.1186/s13100-021-00234-2. Mob DNA. 2021. PMID: 33648565 Free PMC article.

163

Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa.

Wos G, Choudhury RR, Kolář F, Parisod C. Wos G, et al. Mob DNA. 2021 Feb 27;12(1):7. doi: 10.1186/s13100-021-00236-0. Mob DNA. 2021. PMID: 33639991 Free PMC article.

164

Genomic properties of variably methylated retrotransposons in mouse.

Elmer JL, Hay AD, Kessler NJ, Bertozzi TM, Ainscough EAC, Ferguson-Smith AC. Elmer JL, et al. Mob DNA. 2021 Feb 21;12(1):6. doi: 10.1186/s13100-021-00235-1. Mob DNA. 2021. PMID: 33612119 Free PMC article.

165

RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs.

Briggs EM, McKerrow W, Mita P, Boeke JD, Logan SK, Fenyö D. Briggs EM, et al. Mob DNA. 2021 Feb 9;12(1):5. doi: 10.1186/s13100-021-00233-3. Mob DNA. 2021. PMID: 33563338 Free PMC article.

166

Transposable element subfamily annotation has a reproducibility problem.

Carey KM, Patterson G, Wheeler TJ. Carey KM, et al. Mob DNA. 2021 Jan 23;12(1):4. doi: 10.1186/s13100-021-00232-4. Mob DNA. 2021. PMID: 33485368 Free PMC article.

167

Association analysis of repetitive elements and R-loop formation across species.

Zeng C, Onoguchi M, Hamada M. Zeng C, et al. Mob DNA. 2021 Jan 20;12(1):3. doi: 10.1186/s13100-021-00231-5. Mob DNA. 2021. PMID: 33472695 Free PMC article.

168

The Dfam community resource of transposable element families, sequence models, and genome annotations.

Storer J, Hubley R, Rosen J, Wheeler TJ, Smit AF. Storer J, et al. Mob DNA. 2021 Jan 12;12(1):2. doi: 10.1186/s13100-020-00230-y. Mob DNA. 2021. PMID: 33436076 Free PMC article.

169

Transposable element-derived sequences in vertebrate development.

Etchegaray E, Naville M, Volff JN, Haftek-Terreau Z. Etchegaray E, et al. Mob DNA. 2021 Jan 6;12(1):1. doi: 10.1186/s13100-020-00229-5. Mob DNA. 2021. PMID: 33407840 Free PMC article. Review.

170

SeqURE - a new copy-capture based method for sequencing of unknown Retroposition events.

Komkov AY, Urazbakhtin SZ, Saliutina MV, Komech EA, Shelygin YA, Nugmanov GA, Shubin VP, Smirnova AO, Bobrov MY, Tsukanov AS, Snezhkina AV, Kudryavtseva AV, Lebedev YB, Mamedov IZ. Komkov AY, et al. Mob DNA. 2020 Dec 14;11(1):33. doi: 10.1186/s13100-020-00228-6. Mob DNA. 2020. PMID: 33317630 Free PMC article.

171

Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals.

Gao B, Zong W, Miskey C, Ullah N, Diaby M, Chen C, Wang X, Ivics Z, Song C. Gao B, et al. Mob DNA. 2020 Dec 10;11(1):32. doi: 10.1186/s13100-020-00227-7. Mob DNA. 2020. PMID: 33303022 Free PMC article.

172

Correction to: Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines.

Tatkiewicz W, Dickie J, Bedford F, Jones A, Atkin M, Kiernan M, Maze EA, Agit B, Farnham G, Kanapin A, Belshaw R. Tatkiewicz W, et al. Mob DNA. 2020 Nov 30;11(1):31. doi: 10.1186/s13100-020-00226-8. Mob DNA. 2020. PMID: 33292541 Free PMC article.

173

Characterisation of mobile genetic elements in Mycoplasma hominis with the description of ICEHo-II, a variant mycoplasma integrative and conjugative element.

Henrich B, Hammerlage S, Scharf S, Haberhausen D, Fürnkranz U, Köhrer K, Peitzmann L, Fiori PL, Spergser J, Pfeffer K, Dilthey AT. Henrich B, et al. Mob DNA. 2020 Nov 7;11(1):30. doi: 10.1186/s13100-020-00225-9. Mob DNA. 2020. PMID: 33292499 Free PMC article.

174

Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains.

Ueda MT, Kryukov K, Mitsuhashi S, Mitsuhashi H, Imanishi T, Nakagawa S. Ueda MT, et al. Mob DNA. 2020 Sep 17;11:29. doi: 10.1186/s13100-020-00224-w. eCollection 2020. Mob DNA. 2020. PMID: 32963593 Free PMC article.

175

Twenty years of transposable element analysis in the Arabidopsis thaliana genome.

Quesneville H. Quesneville H. Mob DNA. 2020 Jul 27;11:28. doi: 10.1186/s13100-020-00223-x. eCollection 2020. Mob DNA. 2020. PMID: 32742313 Free PMC article. Review.

176

Evolution of pogo, a separate superfamily of IS630-Tc1-mariner transposons, revealing recurrent domestication events in vertebrates.

Gao B, Wang Y, Diaby M, Zong W, Shen D, Wang S, Chen C, Wang X, Song C. Gao B, et al. Mob DNA. 2020 Jul 22;11:25. doi: 10.1186/s13100-020-00220-0. eCollection 2020. Mob DNA. 2020. PMID: 32742312 Free PMC article.

177

LINE-1 ORF1p does not determine substrate preference for human/orangutan SVA and gibbon LAVA.

Damert A. Damert A. Mob DNA. 2020 Jul 11;11:27. doi: 10.1186/s13100-020-00222-y. eCollection 2020. Mob DNA. 2020. PMID: 32676128 Free PMC article.

178

Deep sequencing reveals new roles for MuB in transposition immunity and target-capture, and redefines the insular Ter region of E. coli.

Walker DM, Harshey RM. Walker DM, et al. Mob DNA. 2020 Jul 9;11:26. doi: 10.1186/s13100-020-00217-9. eCollection 2020. Mob DNA. 2020. PMID: 32670425 Free PMC article.

179

IS982 and kin: new insights into an old IS family.

Fayad N, Kallassy Awad M, Mahillon J. Fayad N, et al. Mob DNA. 2020 Jul 4;11:24. doi: 10.1186/s13100-020-00221-z. eCollection 2020. Mob DNA. 2020. PMID: 32641975 Free PMC article. Review.

180

Transposable elements in Drosophila.

Mérel V, Boulesteix M, Fablet M, Vieira C. Mérel V, et al. Mob DNA. 2020 Jul 3;11:23. doi: 10.1186/s13100-020-00213-z. eCollection 2020. Mob DNA. 2020. PMID: 32636946 Free PMC article. Review.

181

Identification and characterisation of endogenous Avian Leukosis Virus subgroup E (ALVE) insertions in chicken whole genome sequencing data.

Mason AS, Lund AR, Hocking PM, Fulton JE, Burt DW. Mason AS, et al. Mob DNA. 2020 Jun 30;11:22. doi: 10.1186/s13100-020-00216-w. eCollection 2020. Mob DNA. 2020. PMID: 32617122 Free PMC article.

182

Phylogenetic analysis of the Tc1/mariner superfamily reveals the unexplored diversity of pogo-like elements.

Dupeyron M, Baril T, Bass C, Hayward A. Dupeyron M, et al. Mob DNA. 2020 Jun 29;11:21. doi: 10.1186/s13100-020-00212-0. eCollection 2020. Mob DNA. 2020. PMID: 32612713 Free PMC article.

183

Transposons and satellite DNA: on the origin of the major satellite DNA family in the Chenopodium genome.

Belyayev A, Josefiová J, Jandová M, Mahelka V, Krak K, Mandák B. Belyayev A, et al. Mob DNA. 2020 Jun 26;11:20. doi: 10.1186/s13100-020-00219-7. eCollection 2020. Mob DNA. 2020. PMID: 32607133 Free PMC article.

184

Transposable element abundance correlates with mode of transmission in microsporidian parasites.

de Albuquerque NRM, Ebert D, Haag KL. de Albuquerque NRM, et al. Mob DNA. 2020 Jun 23;11:19. doi: 10.1186/s13100-020-00218-8. eCollection 2020. Mob DNA. 2020. PMID: 32587636 Free PMC article.

185

Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs.

Kojima KK. Kojima KK. Mob DNA. 2020 May 22;11:18. doi: 10.1186/s13100-020-00210-2. eCollection 2020. Mob DNA. 2020. PMID: 32489435 Free PMC article.

186

Identification of RAG-like transposons in protostomes suggests their ancient bilaterian origin.

Martin EC, Vicari C, Tsakou-Ngouafo L, Pontarotti P, Petrescu AJ, Schatz DG. Martin EC, et al. Mob DNA. 2020 May 6;11:17. doi: 10.1186/s13100-020-00214-y. eCollection 2020. Mob DNA. 2020. PMID: 32399063 Free PMC article.

187

Diverse transposable element landscapes in pathogenic and nonpathogenic yeast models: the value of a comparative perspective.

Maxwell PH. Maxwell PH. Mob DNA. 2020 Apr 21;11:16. doi: 10.1186/s13100-020-00215-x. eCollection 2020. Mob DNA. 2020. PMID: 32336995 Free PMC article. Review.

188

AcademH, a lineage of Academ DNA transposons encoding helicase found in animals and fungi.

Kojima KK. Kojima KK. Mob DNA. 2020 Apr 18;11:15. doi: 10.1186/s13100-020-00211-1. eCollection 2020. Mob DNA. 2020. PMID: 32328173 Free PMC article.

189

Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons.

Ruggiero RP, Boissinot S. Ruggiero RP, et al. Mob DNA. 2020 Apr 7;11:14. doi: 10.1186/s13100-020-00209-9. eCollection 2020. Mob DNA. 2020. PMID: 32280379 Free PMC article.

190

The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families.

Fernandes JD, Zamudio-Hurtado A, Clawson H, Kent WJ, Haussler D, Salama SR, Haeussler M. Fernandes JD, et al. Mob DNA. 2020 Mar 31;11:13. doi: 10.1186/s13100-020-00208-w. eCollection 2020. Mob DNA. 2020. PMID: 32266012 Free PMC article.

191

Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions.

Loh JW, Ha H, Lin T, Sun N, Burns KH, Xing J. Loh JW, et al. Mob DNA. 2020 Feb 22;11:12. doi: 10.1186/s13100-020-00207-x. eCollection 2020. Mob DNA. 2020. PMID: 32110248 Free PMC article.

192

Finding and extending ancient simple sequence repeat-derived regions in the human genome.

Shortt JA, Ruggiero RP, Cox C, Wacholder AC, Pollock DD. Shortt JA, et al. Mob DNA. 2020 Feb 17;11:11. doi: 10.1186/s13100-020-00206-y. eCollection 2020. Mob DNA. 2020. PMID: 32095164 Free PMC article.

193

Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered.

Hemmer LW, Dias GB, Smith B, Van Vaerenberghe K, Howard A, Bergman CM, Blumenstiel JP. Hemmer LW, et al. Mob DNA. 2020 Feb 15;11:10. doi: 10.1186/s13100-020-0205-0. eCollection 2020. Mob DNA. 2020. PMID: 32082426 Free PMC article.

194

Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines.

Tatkiewicz W, Dickie J, Bedford F, Jones A, Atkin M, Kiernan M, Maze EA, Agit B, Farnham G, Kanapin A, Belshaw R. Tatkiewicz W, et al. Mob DNA. 2020 Feb 7;11:9. doi: 10.1186/s13100-020-0204-1. eCollection 2020. Mob DNA. 2020. PMID: 32055257 Free PMC article.

195

Integrating transposable elements in the 3D genome.

Bousios A, Nützmann HW, Buck D, Michieletto D. Bousios A, et al. Mob DNA. 2020 Feb 4;11:8. doi: 10.1186/s13100-020-0202-3. eCollection 2020. Mob DNA. 2020. PMID: 32042316 Free PMC article.

196

LUMI-PCR: an Illumina platform ligation-mediated PCR protocol for integration site cloning, provides molecular quantitation of integration sites.

Dawes JC, Webster P, Iadarola B, Garcia-Diaz C, Dore M, Bolt BJ, Dewchand H, Dharmalingam G, McLatchie AP, Kaczor J, Caceres JJ, Paccanaro A, Game L, Parrinello S, Uren AG. Dawes JC, et al. Mob DNA. 2020 Feb 4;11:7. doi: 10.1186/s13100-020-0201-4. eCollection 2020. Mob DNA. 2020. PMID: 32042315 Free PMC article.

197

Identification and characterization of ERV-W-like sequences in Platyrrhini species provides new insights into the evolutionary history of ERV-W in primates.

Grandi N, Pisano MP, Demurtas M, Blomberg J, Magiorkinis G, Mayer J, Tramontano E. Grandi N, et al. Mob DNA. 2020 Feb 1;11:6. doi: 10.1186/s13100-020-0203-2. eCollection 2020. Mob DNA. 2020. PMID: 32021657 Free PMC article.

198

Compensating for over-production inhibition of the Hsmar1 transposon in Escherichia coli using a series of constitutive promoters.

Tellier M, Chalmers R. Tellier M, et al. Mob DNA. 2020 Jan 10;11:5. doi: 10.1186/s13100-020-0200-5. eCollection 2020. Mob DNA. 2020. PMID: 31938044 Free PMC article.

199

SINE Retrotransposon variation drives Ecotypic disparity in natural populations of Coilia nasus.

Liu D, Yang J, Tang W, Zhang X, Royster CM, Zhang M. Liu D, et al. Mob DNA. 2020 Jan 8;11:4. doi: 10.1186/s13100-019-0198-8. eCollection 2020. Mob DNA. 2020. PMID: 31921363 Free PMC article.

200

Correction to: Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study.

Jedlicka P, Lexa M, Vanat I, Hobza R, Kejnovsky E. Jedlicka P, et al. Mob DNA. 2020 Jan 7;11:3. doi: 10.1186/s13100-019-0199-7. eCollection 2020. Mob DNA. 2020. PMID: 31921362 Free PMC article.

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