"Proteome Sci"[Journal] - Search Results

Year	Number of Results
2003	7
2004	9
2005	9
2006	23
2007	20
2008	36
2009	48
2010	70
2011	96
2012	94
2013	68
2014	56
2015	33
2016	36
2017	20
2018	20
2019	8
2020	12
2021	14
2022	18
2023	15

1

Proteomic analysis of ceftazidime and meropenem-exposed Pseudomonas aeruginosa ATCC 9027.

Ngo HL, Huynh TQ, Tran NBV, Nguyen NHB, Tong TH, Trinh TTL, Nguyen VD, Das PP, Lim TK, Lin Q, Nguyen TTH. Ngo HL, et al. Proteome Sci. 2023 Sep 28;21(1):15. doi: 10.1186/s12953-023-00217-6. Proteome Sci. 2023. PMID: 37770917 Free PMC article.

2

Insight into the underlying molecular mechanism of dilated cardiomyopathy through integrative analysis of data mining, iTRAQ-PRM proteomics and bioinformatics.

Xiong H, Zheng Z, Zhao C, Zhao M, Wang Q, Zhang P, Li Y, Zhu Y, Zhu S, Li J. Xiong H, et al. Proteome Sci. 2023 Sep 22;21(1):13. doi: 10.1186/s12953-023-00214-9. Proteome Sci. 2023. PMID: 37740197 Free PMC article.

3

Analysis of differential membrane proteins related to matrix stiffness-mediated metformin resistance in hepatocellular carcinoma cells.

Gao X, Qian J, Zhang Y, Wang H, Cui J, Yang Y. Gao X, et al. Proteome Sci. 2023 Sep 22;21(1):14. doi: 10.1186/s12953-023-00216-7. Proteome Sci. 2023. PMID: 37740172 Free PMC article.

4

PRM-based quantitative proteomics analysis of altered HSP abundance in villi and decidua of patients with early missed abortion.

Chen XF, Chen XQ, Luo HL, Xia LN, Huang SH, Chen Q. Chen XF, et al. Proteome Sci. 2023 Aug 16;21(1):12. doi: 10.1186/s12953-023-00213-w. Proteome Sci. 2023. PMID: 37587463 Free PMC article.

5

Serum proteomic identification and validation of two novel atherosclerotic aortic aneurysm biomarkers, profilin 1 and complement factor D.

Murakami Y, Nishigori M, Yagi H, Osaki T, Wakabayashi M, Shirai M, Son C, Iba Y, Minatoya K, Kusano K, Tomita T, Ishibashi-Ueda H, Matsuda H, Minamino N. Murakami Y, et al. Proteome Sci. 2023 Aug 5;21(1):11. doi: 10.1186/s12953-023-00212-x. Proteome Sci. 2023. PMID: 37543598 Free PMC article.

6

Altered levels of transthyretin in human cerebral microdialysate after subarachnoid haemorrhage using proteomics; a descriptive pilot study.

Ginstman F, Ghafouri B, Zsigmond P. Ginstman F, et al. Proteome Sci. 2023 Jul 7;21(1):10. doi: 10.1186/s12953-023-00210-z. Proteome Sci. 2023. PMID: 37420193 Free PMC article.

7

Data-independent acquisition-based mass spectrometry(DIA-MS) for quantitative analysis of patients with chronic hepatitis B.

Wang B, Zhang Q, Wu L, Deng C, Luo M, Xie Y, Wu G, Chen W, Sheng Y, Zhu P, Qin G. Wang B, et al. Proteome Sci. 2023 Jun 6;21(1):9. doi: 10.1186/s12953-023-00209-6. Proteome Sci. 2023. PMID: 37280603 Free PMC article.

8

Purification and proteomic analysis of potent fibrinolytic enzymes extracted from Lumbricus rubellus.

Stephani L, Rahayu P, Retnoningrum D, Suhartono MT, Rachmawati H, Tjandrawinata RR. Stephani L, et al. Proteome Sci. 2023 May 8;21(1):8. doi: 10.1186/s12953-023-00206-9. Proteome Sci. 2023. PMID: 37158880 Free PMC article.

9

Proteomics identifies differentially expressed proteins in glioblastoma U87 cells treated with hederagenin.

Zhang Y, Han Y, Shang Y, Wang X, Sun J. Zhang Y, et al. Proteome Sci. 2023 Apr 29;21(1):7. doi: 10.1186/s12953-023-00208-7. Proteome Sci. 2023. PMID: 37120556 Free PMC article.

10

Proteomics profiling for the global and acetylated proteins of papillary thyroid cancers.

Wei W, Wu Y, Chen DD, Song Y, Xu G, Shi Q, Dong XP. Wei W, et al. Proteome Sci. 2023 Apr 26;21(1):6. doi: 10.1186/s12953-023-00207-8. Proteome Sci. 2023. PMID: 37101287 Free PMC article.

11

Effects of Atractylodes lancea extracts on intestinal flora and serum metabolites in mice with intestinal dysbacteriosis.

Zhang B, Bu L, Tian H, You Z, Zhao M, Tian J, Zhang Y, Wang Q, Tan C, Cao Y, Feng D, Xi Z. Zhang B, et al. Proteome Sci. 2023 Apr 15;21(1):5. doi: 10.1186/s12953-023-00204-x. Proteome Sci. 2023. PMID: 37061727 Free PMC article.

12

Proteomics analysis of methionine enkephalin upregulated macrophages against infection by the influenza-A virus.

Fu W, Xie Z, Bai M, Zhang Z, Zhao Y, Tian J. Fu W, et al. Proteome Sci. 2023 Apr 11;21(1):4. doi: 10.1186/s12953-023-00205-w. Proteome Sci. 2023. PMID: 37041527 Free PMC article.

13

Isolation and proteomic profiling of urinary exosomes from patients with colorectal cancer.

Ma L, Yu H, Zhu Y, Xu K, Zhao A, Ding L, Gao H, Zhang M. Ma L, et al. Proteome Sci. 2023 Feb 9;21(1):3. doi: 10.1186/s12953-023-00203-y. Proteome Sci. 2023. PMID: 36759883 Free PMC article.

14

Quantitative proteomics analysis revealed the potential role of lncRNA Ftx in cardiomyocytes.

Sun X, Jiang Y, Li Q, Tan Q, Dong M, Cai B, Zhang D, Zhao Q. Sun X, et al. Proteome Sci. 2023 Jan 5;21(1):2. doi: 10.1186/s12953-022-00201-6. Proteome Sci. 2023. PMID: 36604692 Free PMC article.

15

Proteomic Analysis of Protective Effects of Dl-3-n-Butylphthalide against mpp + -Induced Toxicity via downregulating P53 pathway in N2A Cells.

Zhao Y, Zhang J, Zhang Y, Li S, Gao Y, Chang C, Liu X, Xu L, Yang G. Zhao Y, et al. Proteome Sci. 2023 Jan 3;21(1):1. doi: 10.1186/s12953-022-00199-x. Proteome Sci. 2023. PMID: 36597095 Free PMC article.

16

Responses of the tree peony (Paeonia suffruticosa, Paeoniaceae) cultivar 'Yu Hong' to heat stress revealed by iTRAQ-based quantitative proteomics.

Ma J, Wang Q, Wei LL, Zhao Y, Zhang GZ, Wang J, Gu CH. Ma J, et al. Proteome Sci. 2022 Dec 29;20(1):18. doi: 10.1186/s12953-022-00202-5. Proteome Sci. 2022. PMID: 36578066 Free PMC article.

17

TMT-based quantitative proteomics analysis of the effects of Jiawei Danshen decoction myocardial ischemia-reperfusion injury.

Zhu XM, Tan Y, Shi YH, Li Q, Zhu J, Liu XD, Tong QZ. Zhu XM, et al. Proteome Sci. 2022 Dec 14;20(1):17. doi: 10.1186/s12953-022-00200-7. Proteome Sci. 2022. PMID: 36517846 Free PMC article.

18

Profiles of transcriptome and metabolic pathways after hypobaric hypoxia exposure.

Xu J, Chen WJ, Wang Z, Xin MY, Gao SH, Liu WJ, Wang KK, Ma JW, Yan XZ, Ren YM. Xu J, et al. Proteome Sci. 2022 Sep 24;20(1):16. doi: 10.1186/s12953-022-00198-y. Proteome Sci. 2022. PMID: 36153524 Free PMC article.

19

A combined protein toxin screening based on the transcriptome and proteome of Solenopsis invicta.

Cai L, Yang F, Wang Y, Yang J, Zhu Y, Ma X, Höfer J, Wang Y, Ma Y, Xiao L. Cai L, et al. Proteome Sci. 2022 Sep 21;20(1):15. doi: 10.1186/s12953-022-00197-z. Proteome Sci. 2022. PMID: 36131344 Free PMC article.

20

Effect of downregulated citrate synthase on oxidative phosphorylation signaling pathway in HEI-OC1 cells.

Xu X, Liu Y, Luan J, Liu R, Wang Y, Liu Y, Xu A, Zhou B, Han F, Shang W. Xu X, et al. Proteome Sci. 2022 Sep 7;20(1):14. doi: 10.1186/s12953-022-00196-0. Proteome Sci. 2022. PMID: 36071491 Free PMC article.

21

Tear proteomics analysis of patient suffered from delayed mustard gas keratopathy.

Parvin S, Shahriary A, Aghamollaei H, Gh BFNM, Bagheri H, Ghanei M, Daryabari SH, Jadidi K, Arabfard M. Parvin S, et al. Proteome Sci. 2022 Aug 10;20(1):13. doi: 10.1186/s12953-022-00195-1. Proteome Sci. 2022. PMID: 35948930 Free PMC article.

22

Phosphoproteome profiling of mouse liver during normal aging.

Liu JF, Wu Y, Yang YH, Wu SF, Liu S, Xu P, Yang JT. Liu JF, et al. Proteome Sci. 2022 Aug 5;20(1):12. doi: 10.1186/s12953-022-00194-2. Proteome Sci. 2022. PMID: 35932011 Free PMC article.

23

A risk score model based on TGF-β pathway-related genes predicts survival, tumor microenvironment and immunotherapy for liver hepatocellular carcinoma.

Liao J, Liu Q, Chen J, Lu Z, Mo H, Jia J. Liao J, et al. Proteome Sci. 2022 Jun 22;20(1):11. doi: 10.1186/s12953-022-00192-4. Proteome Sci. 2022. PMID: 35733217 Free PMC article.

24

Identification of different proteins binding to Na, K-ATPase α1 in LPS-induced ARDS cell model by proteomic analysis.

Wen XP, Long G, Zhang YZ, Huang H, Liu TH, Wan QQ. Wen XP, et al. Proteome Sci. 2022 Jun 9;20(1):10. doi: 10.1186/s12953-022-00193-3. Proteome Sci. 2022. PMID: 35681168 Free PMC article.

25

A novel nanobody as therapeutics target for EGFR-positive colorectal cancer therapy: exploring the effects of the nanobody on SW480 cells using proteomics approach.

Lamtha T, Krobthong S, Yingchutrakul Y, Samutrtai P, Gerner C, Tabtimmai L, Choowongkomon K. Lamtha T, et al. Proteome Sci. 2022 May 16;20(1):9. doi: 10.1186/s12953-022-00190-6. Proteome Sci. 2022. PMID: 35578244 Free PMC article.

26

Quantitative proteomic analysis of cerebrospinal fluid reveals CD163, A2M and full-length APP as potential diagnostic biomarkers of paediatric bacterial meningitis.

Luo T, Yang S, Chen Y, Liu S, Yang L, Hu N, Ma Y, Qiu J, Wang K, Li L, Tan L. Luo T, et al. Proteome Sci. 2022 May 6;20(1):8. doi: 10.1186/s12953-022-00191-5. Proteome Sci. 2022. PMID: 35524265 Free PMC article.

27

Long noncoding RNA Ftx regulates the protein expression profile in HCT116 human colon cancer cells.

Jia R, Song L, Fei Z, Qin C, Zhao Q. Jia R, et al. Proteome Sci. 2022 Apr 30;20(1):7. doi: 10.1186/s12953-022-00187-1. Proteome Sci. 2022. PMID: 35490216 Free PMC article.

28

TMT-based proteomics analysis of the cerebral cortex of TauT knockout rats.

Xia Y, Huang X, Mo L, Wang C, Fan W, Huang H. Xia Y, et al. Proteome Sci. 2022 Apr 25;20(1):6. doi: 10.1186/s12953-022-00189-z. Proteome Sci. 2022. PMID: 35468821 Free PMC article.

29

Integrative proteomic characterization of trace FFPE samples in early-stage gastrointestinal cancer.

Li L, Liu H, Li Y, Guo C, Wang B, Shen D, Zhang Q, Ding C. Li L, et al. Proteome Sci. 2022 Apr 9;20(1):5. doi: 10.1186/s12953-022-00188-0. Proteome Sci. 2022. PMID: 35397555 Free PMC article.

30

Predicting protein-protein interactions between banana and Fusarium oxysporum f. sp. cubense race 4 integrating sequence and domain homologous alignment and neural network verification.

Fang H, Zhong C, Tang C. Fang H, et al. Proteome Sci. 2022 Mar 29;20(1):4. doi: 10.1186/s12953-022-00186-2. Proteome Sci. 2022. PMID: 35351140 Free PMC article.

31

Identification and validation of serum autoantibodies in children with B-cell acute lymphoblastic leukemia by serological proteome analysis.

Yu R, Yang S, Liu Y, Zhu Z. Yu R, et al. Proteome Sci. 2022 Feb 2;20(1):3. doi: 10.1186/s12953-021-00184-w. Proteome Sci. 2022. PMID: 35109855 Free PMC article.

32

Analysis of plasma proteins using 2D gels and novel fluorescent probes: in search of blood based biomarkers for Alzheimer's disease.

Laffoon SB, Doecke JD, Roberts AM, Vance JA, Reeves BD, Pertile KK, Rumble RL, Fowler CJ, Trounson B, Ames D, Martins R, Bush AI, Masters CL, Grieco PA, Dratz EA, Roberts BR. Laffoon SB, et al. Proteome Sci. 2022 Jan 26;20(1):2. doi: 10.1186/s12953-021-00185-9. Proteome Sci. 2022. PMID: 35081972 Free PMC article.

33

TMT-based quantitative proteomic profiling of human monocyte-derived macrophages and foam cells.

Zhang Y, Fu Y, Jia L, Zhang C, Cao W, Alam N, Wang R, Wang W, Bai L, Zhao S, Liu E. Zhang Y, et al. Proteome Sci. 2022 Jan 3;20(1):1. doi: 10.1186/s12953-021-00183-x. Proteome Sci. 2022. PMID: 34980145 Free PMC article.

34

First comprehensive proteome analysis of lysine crotonylation in Streptococcus agalactiae, a pathogen causing meningoencephalitis in teleosts.

Chen X, Fan B, Fan C, Wang Z, Wangkahart E, Huang Y, Huang Y, Jian J, Wang B. Chen X, et al. Proteome Sci. 2021 Nov 10;19(1):14. doi: 10.1186/s12953-021-00182-y. Proteome Sci. 2021. PMID: 34758830 Free PMC article.

35

The proteomics analysis of the effects of Zhishi Rhubarb soup on ischaemic stroke.

Zhang JH, Shao YJ, Hui Z, Wang SL, Huang C, Zhao Y. Zhang JH, et al. Proteome Sci. 2021 Nov 10;19(1):13. doi: 10.1186/s12953-021-00181-z. Proteome Sci. 2021. PMID: 34758819 Free PMC article.

36

Quantitative proteomics by iTRAQ-PRM based reveals the new characterization for gout.

Chen G, Cheng J, Yu H, Huang X, Bao H, Qin L, Wang L, Song Y, Liu X, Peng A. Chen G, et al. Proteome Sci. 2021 Oct 11;19(1):12. doi: 10.1186/s12953-021-00180-0. Proteome Sci. 2021. PMID: 34635120 Free PMC article.

37

Comparison of false-discovery rates of various decoy databases.

Lee S, Park H, Kim H. Lee S, et al. Proteome Sci. 2021 Sep 18;19(1):11. doi: 10.1186/s12953-021-00179-7. Proteome Sci. 2021. PMID: 34537052 Free PMC article.

38

Analysis of allergen components and identification of bioactivity of HSP70 in pollen of Populus deltoides.

Guo W, Zhan X, Jiang F, Xi Y. Guo W, et al. Proteome Sci. 2021 Sep 3;19(1):10. doi: 10.1186/s12953-021-00178-8. Proteome Sci. 2021. PMID: 34479544 Free PMC article.

39

iTRAQ-based proteomic analysis of sperm reveals candidate proteins that affect the quality of spermatozoa from boars on plateaus.

Zhao Y, Wang Y, Guo F, Lu B, Sun J, Wang J, Ren Z. Zhao Y, et al. Proteome Sci. 2021 Jul 30;19(1):9. doi: 10.1186/s12953-021-00177-9. Proteome Sci. 2021. PMID: 34330296 Free PMC article.

40

Comparative proteomics analysis reveals differentially accumulated proteins associated with male and female A. chinensis var. chinensis bud development.

Zhang Y, Wang Y, Zhou W, Zheng S, Zhang W. Zhang Y, et al. Proteome Sci. 2021 Apr 22;19(1):8. doi: 10.1186/s12953-021-00176-w. Proteome Sci. 2021. PMID: 33888140 Free PMC article.

41

Proteomics and ultrastructural analysis of Hermetia illucens (Diptera: Stratiomyidae) larval peritrophic matrix.

Lin YB, Rong JJ, Wei XF, Sui ZX, Xiao J, Huang DW. Lin YB, et al. Proteome Sci. 2021 Apr 9;19(1):7. doi: 10.1186/s12953-021-00175-x. Proteome Sci. 2021. PMID: 33836751 Free PMC article.

42

Label-free quantitative proteomics of Sorghum bicolor reveals the proteins strengthening plant defense against insect pest Chilo partellus.

Tamhane VA, Sant SS, Jadhav AR, War AR, Sharma HC, Jaleel A, Kashikar AS. Tamhane VA, et al. Proteome Sci. 2021 Apr 2;19(1):6. doi: 10.1186/s12953-021-00173-z. Proteome Sci. 2021. PMID: 33810819 Free PMC article.

43

Non-targeted proteomics of acute respiratory distress syndrome: clinical and research applications.

Wen XP, Zhang YZ, Wan QQ. Wen XP, et al. Proteome Sci. 2021 Mar 20;19(1):5. doi: 10.1186/s12953-021-00174-y. Proteome Sci. 2021. PMID: 33743690 Free PMC article. Review.

44

Label-free quantitative proteomic analysis of the inhibition effect of Lactobacillus rhamnosus GG on Escherichia coli biofilm formation in co-culture.

Song H, Lou N, Liu J, Xiang H, Shang D. Song H, et al. Proteome Sci. 2021 Mar 9;19(1):4. doi: 10.1186/s12953-021-00172-0. Proteome Sci. 2021. PMID: 33750393 Free PMC article.

45

Quantitative proteomic profiling of Cervicovaginal fluid from pregnant women with term and preterm birth.

Kim YE, Kim K, Oh HB, Lee SK, Kang D. Kim YE, et al. Proteome Sci. 2021 Feb 15;19(1):3. doi: 10.1186/s12953-021-00171-1. Proteome Sci. 2021. PMID: 33588889 Free PMC article.

46

ITRAQ-based quantitative proteomic analysis of Fusarium moniliforme (Fusarium verticillioides) in response to Phloridzin inducers.

Zhang R, Jiang W, Liu X, Duan Y, Xiang L, Wang Y, Jiang Y, Shen X, Chen X, Yin C, Mao Z. Zhang R, et al. Proteome Sci. 2021 Jan 14;19(1):2. doi: 10.1186/s12953-021-00170-2. Proteome Sci. 2021. PMID: 33446211 Free PMC article.

47

Malonyl-proteome profiles of Staphylococcus aureus reveal lysine malonylation modification in enzymes involved in energy metabolism.

Shi Y, Zhu J, Xu Y, Tang X, Yang Z, Huang A. Shi Y, et al. Proteome Sci. 2021 Jan 12;19(1):1. doi: 10.1186/s12953-020-00169-1. Proteome Sci. 2021. PMID: 33436009 Free PMC article.

48

A quantitative proteomics analysis for small molecule Stemazole's effect on human neural stem cells.

Li H, Zhang Y, Zhang J, Zhao C, Zhu Y, Han M. Li H, et al. Proteome Sci. 2020 Dec 9;18(1):12. doi: 10.1186/s12953-020-00168-2. Proteome Sci. 2020. PMID: 33298084 Free PMC article.

49

Sex impacts cardiac function and the proteome response to thyroid hormone in aged mice.

Zhu WZ, Olson A, Portman M, Ledee D. Zhu WZ, et al. Proteome Sci. 2020 Dec 7;18(1):11. doi: 10.1186/s12953-020-00167-3. Proteome Sci. 2020. PMID: 33372611 Free PMC article.

50

Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation.

Teklu T, Wondale B, Taye B, Hailemariam M, Bekele S, Tamirat M, Zewude A, Mohamed T, Medhin G, Legesse M, Yu Y, Ameni G, Pieper R. Teklu T, et al. Proteome Sci. 2020 Oct 31;18(1):10. doi: 10.1186/s12953-020-00165-5. Proteome Sci. 2020. PMID: 33292280 Free PMC article.

51

Correction to: Serum peptidome based biomarkers searching for monitoring minimal residual disease in adult acute lymphocytic leukemia.

Bai J, He A, Huang C, Yang J, Zhang W, Wang J, Yang Y, Zhang P, Zhang Y, Zhou F. Bai J, et al. Proteome Sci. 2020 Oct 24;18:9. doi: 10.1186/s12953-020-00166-4. eCollection 2020. Proteome Sci. 2020. PMID: 33110398 Free PMC article.

52

Deciphering the immunogenic potential of wheat flour: a reference map of the salt-soluble proteome from the U.S. wheat Butte 86.

Altenbach SB, Chang HC, Simon-Buss A. Altenbach SB, et al. Proteome Sci. 2020 Aug 1;18:8. doi: 10.1186/s12953-020-00164-6. eCollection 2020. Proteome Sci. 2020. PMID: 32774173 Free PMC article.

53

Proteomic investigation of protein adsorption to cerebral microdialysis membranes in surgically treated intracerebral hemorrhage patients - a pilot study.

Tobieson L, Czifra Z, Wåhlén K, Marklund N, Ghafouri B. Tobieson L, et al. Proteome Sci. 2020 Jul 25;18:7. doi: 10.1186/s12953-020-00163-7. eCollection 2020. Proteome Sci. 2020. PMID: 32728348 Free PMC article.

54

Proteome-wide identification of arginine methylation in colorectal cancer tissues from patients.

Lim Y, Lee JY, Ha SJ, Yu S, Shin JK, Kim HC. Lim Y, et al. Proteome Sci. 2020 May 19;18:6. doi: 10.1186/s12953-020-00162-8. eCollection 2020. Proteome Sci. 2020. PMID: 32467672 Free PMC article.

55

Production of high-quality two-dimensional gel electrophoresis profile for marine medaka samples by using Trizol-based protein extraction approaches.

Kwok CS, Lai KK, Lam SW, Chan KK, Xu SJ, Lee FW. Kwok CS, et al. Proteome Sci. 2020 May 2;18:5. doi: 10.1186/s12953-020-00161-9. eCollection 2020. Proteome Sci. 2020. PMID: 32390769 Free PMC article.

56

NEK10 interactome and depletion reveal new roles in mitochondria.

Peres de Oliveira A, Basei FL, Slepicka PF, de Castro Ferezin C, Melo-Hanchuk TD, de Souza EE, Lima TI, Dos Santos VT, Mendes D, Silveira LR, Menck CFM, Kobarg J. Peres de Oliveira A, et al. Proteome Sci. 2020 Apr 28;18:4. doi: 10.1186/s12953-020-00160-w. eCollection 2020. Proteome Sci. 2020. PMID: 32368190 Free PMC article.

57

Protection of the transplant kidney during cold perfusion with doxycycline: proteomic analysis in a rat model.

Moser MAJ, Sawicka K, Sawicka J, Franczak A, Cohen A, Bil-Lula I, Sawicki G. Moser MAJ, et al. Proteome Sci. 2020 Apr 20;18:3. doi: 10.1186/s12953-020-00159-3. eCollection 2020. Proteome Sci. 2020. PMID: 32336955 Free PMC article.

58

Comprehensive analysis of the cardiac proteome in a rat model of myocardial ischemia-reperfusion using a TMT-based quantitative proteomic strategy.

Lim SH, Lee J, Han MJ. Lim SH, et al. Proteome Sci. 2020 Mar 6;18:2. doi: 10.1186/s12953-020-00158-4. eCollection 2020. Proteome Sci. 2020. PMID: 32165865 Free PMC article.

59

Comparative proteomic analysis of the brain and colon in three rat models of irritable bowel syndrome.

Zhang B, Xue H, Wang W, Chen T, Su M, Kang N, Yang J, Bian Z, Wang F, Tang X. Zhang B, et al. Proteome Sci. 2020 Feb 24;18:1. doi: 10.1186/s12953-020-0157-9. eCollection 2020. Proteome Sci. 2020. PMID: 32123521 Free PMC article.

60

The interactome and proteomic responses of ALKBH7 in cell lines by in-depth proteomics analysis.

Meng S, Zhan S, Dou W, Ge W. Meng S, et al. Proteome Sci. 2019 Dec 29;17:8. doi: 10.1186/s12953-019-0156-x. eCollection 2019. Proteome Sci. 2019. PMID: 31889914 Free PMC article.

61

Chronic kidney disease: a review of proteomic and metabolomic approaches to membranous glomerulonephritis, focal segmental glomerulosclerosis, and IgA nephropathy biomarkers.

Taherkhani A, Farrokhi Yekta R, Mohseni M, Saidijam M, Arefi Oskouie A. Taherkhani A, et al. Proteome Sci. 2019 Dec 20;17:7. doi: 10.1186/s12953-019-0155-y. eCollection 2019. Proteome Sci. 2019. PMID: 31889913 Free PMC article. Review.

62

Comparative iTRAQ proteomics revealed proteins associated with lobed fin regeneration in Bichirs.

Lu S, Xiong Q, Du K, Gan X, Wang X, Yang L, Wang Y, Ge F, He S. Lu S, et al. Proteome Sci. 2019 Nov 20;17:6. doi: 10.1186/s12953-019-0153-0. eCollection 2019. Proteome Sci. 2019. PMID: 31832023 Free PMC article.

63

Exploring the key communicator role of exosomes in cancer microenvironment through proteomics.

Kim H, Kim DW, Cho JY. Kim H, et al. Proteome Sci. 2019 Oct 29;17:5. doi: 10.1186/s12953-019-0154-z. eCollection 2019. Proteome Sci. 2019. PMID: 31686989 Free PMC article. Review.

64

Unraveling proteome changes and potential regulatory proteins of bovine follicular Granulosa cells by mass spectrometry and multi-omics analysis.

Hou S, Hao Q, Zhu Z, Xu D, Liu W, Lyu L, Li P. Hou S, et al. Proteome Sci. 2019 Oct 25;17:4. doi: 10.1186/s12953-019-0152-1. eCollection 2019. Proteome Sci. 2019. PMID: 31673248 Free PMC article.

65

Proteomic analysis of human periodontal ligament cells under hypoxia.

Li Q, Luo T, Lu W, Yi X, Zhao Z, Liu J. Li Q, et al. Proteome Sci. 2019 Aug 31;17:3. doi: 10.1186/s12953-019-0151-2. eCollection 2019. Proteome Sci. 2019. PMID: 31496921 Free PMC article.

66

Comparison of enzymatic activities and proteomic profiles of Butyrivibrio fibrisolvens grown on different carbon sources.

Sechovcová H, Kulhavá L, Fliegerová K, Trundová M, Morais D, Mrázek J, Kopečný J. Sechovcová H, et al. Proteome Sci. 2019 Jun 1;17:2. doi: 10.1186/s12953-019-0150-3. eCollection 2019. Proteome Sci. 2019. PMID: 31168299 Free PMC article.

67

Hepatic protein Carbonylation profiles induced by lipid accumulation and oxidative stress for investigating cellular response to non-alcoholic fatty liver disease in vitro.

Chienwichai P, Reamtong O, Boonyuen U, Pisitkun T, Somparn P, Tharnpoophasiam P, Worakhunpiset S, Topanurak S. Chienwichai P, et al. Proteome Sci. 2019 Mar 27;17:1. doi: 10.1186/s12953-019-0149-9. eCollection 2019. Proteome Sci. 2019. PMID: 30962768 Free PMC article.

68

Proteome modifications on tomato under extreme high light induced-stress.

Parrine D, Wu BS, Muhammad B, Rivera K, Pappin D, Zhao X, Lefsrud M. Parrine D, et al. Proteome Sci. 2018 Nov 24;16:20. doi: 10.1186/s12953-018-0148-2. eCollection 2018. Proteome Sci. 2018. PMID: 30534005 Free PMC article.

69

Key factors identified by proteomic analysis in maize (Zea mays L.) seedlings' response to long-term exposure to different phosphate levels.

Sun Y, Mu C, Liu X. Sun Y, et al. Proteome Sci. 2018 Nov 20;16:19. doi: 10.1186/s12953-018-0147-3. eCollection 2018. Proteome Sci. 2018. PMID: 30479573 Free PMC article.

70

Calcitonin gene-related peptide promotes proliferation and inhibits apoptosis in endothelial progenitor cells via inhibiting MAPK signaling.

Wu J, Liu S, Wang Z, Ma S, Meng H, Hu J. Wu J, et al. Proteome Sci. 2018 Nov 14;16:18. doi: 10.1186/s12953-018-0146-4. eCollection 2018. Proteome Sci. 2018. PMID: 30473635 Free PMC article.

71

Comparative proteomic analysis of Ulva prolifera response to high temperature stress.

Fan M, Sun X, Liao Z, Wang J, Li Y, Xu N. Fan M, et al. Proteome Sci. 2018 Oct 27;16:17. doi: 10.1186/s12953-018-0145-5. eCollection 2018. Proteome Sci. 2018. PMID: 30386183 Free PMC article.

72

Global phosphoproteomic analysis identifies SRMS-regulated secondary signaling intermediates.

Goel RK, Meyer M, Paczkowska M, Reimand J, Vizeacoumar F, Vizeacoumar F, Lam TT, Lukong KE. Goel RK, et al. Proteome Sci. 2018 Aug 18;16:16. doi: 10.1186/s12953-018-0143-7. eCollection 2018. Proteome Sci. 2018. PMID: 30140170 Free PMC article.

73

Label-free quantitative mass spectrometry analysis of differential protein expression in the developing cochlear sensory epithelium.

Darville LNF, Sokolowski BHA. Darville LNF, et al. Proteome Sci. 2018 Aug 7;16:15. doi: 10.1186/s12953-018-0144-6. eCollection 2018. Proteome Sci. 2018. PMID: 30127667 Free PMC article.

74

Comparative iTRAQ proteomics revealed proteins associated with horn development in yak.

Li M, Wu X, Guo X, Bao P, Ding X, Chu M, Liang C, Yan P. Li M, et al. Proteome Sci. 2018 Jul 24;16:14. doi: 10.1186/s12953-018-0141-9. eCollection 2018. Proteome Sci. 2018. PMID: 30061793 Free PMC article.

75

Correction to: Proteomic identification and characterization of hepatic glyoxalase 1 dysregulation in non-alcoholic fatty liver disease.

Spanos C, Maldonado EM, Fisher CP, Leenutaphong P, Oviedo-Orta E, Windridge D, Salguero FJ, Bermúdez-Fajardo A, Weeks ME, Evans C, Corfe BM, Rabbani N, Thornalley PJ, Miller MH, Wang H, Dillon JF, Quaglia A, Dhawan A, Fitzpatrick E, Moore JB. Spanos C, et al. Proteome Sci. 2018 Jun 25;16:13. doi: 10.1186/s12953-018-0142-8. eCollection 2018. Proteome Sci. 2018. PMID: 29983642 Free PMC article.

76

iTRAQ-Based Proteomic Analysis reveals possible target-related proteins and signal networks in human osteoblasts overexpressing FGFR2.

Cai T, Wu B, Tang X, Zhou Z, Yang J, Ke R, Mu X. Cai T, et al. Proteome Sci. 2018 Jun 19;16:12. doi: 10.1186/s12953-018-0140-x. eCollection 2018. Proteome Sci. 2018. PMID: 29950929 Free PMC article.

77

In-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix.

Mann K, Cerveau N, Gummich M, Fritz M, Mann M, Jackson DJ. Mann K, et al. Proteome Sci. 2018 Jun 15;16:11. doi: 10.1186/s12953-018-0139-3. eCollection 2018. Proteome Sci. 2018. PMID: 29983641 Free PMC article.

78

Correction to: Proteomic characterization of adrenal gland embryonic development reveals early initiation of steroid metabolism and reduction of the retinoic acid pathway.

Dihazi GH, Mueller GA, Asif AR, Eltoweissy M, Wessels JT, Dihazi H. Dihazi GH, et al. Proteome Sci. 2018 May 30;16:10. doi: 10.1186/s12953-018-0138-4. eCollection 2018. Proteome Sci. 2018. PMID: 29875618 Free PMC article.

79

Proteomic analysis of buccal gland secretion from fasting and feeding lampreys (Lampetra morii).

Li B, Gou M, Han J, Yuan X, Li Y, Li T, Jiang Q, Xiao R, Li Q. Li B, et al. Proteome Sci. 2018 May 22;16:9. doi: 10.1186/s12953-018-0137-5. eCollection 2018. Proteome Sci. 2018. PMID: 29796011 Free PMC article.

80

ITRAQ-based quantitative proteomic analysis of processed Euphorbia lathyris L. for reducing the intestinal toxicity.

Zhang Y, Wang Y, Li S, Zhang X, Li W, Luo S, Sun Z, Nie R. Zhang Y, et al. Proteome Sci. 2018 Apr 17;16:8. doi: 10.1186/s12953-018-0136-6. eCollection 2018. Proteome Sci. 2018. PMID: 29692685 Free PMC article.

81

In vitro gentamicin exposure alters caveolae protein profile in cochlear spiral ligament pericytes.

Ghelfi E, Grondin Y, Millet EJ, Bartos A, Bortoni M, Oliveira Gomes Dos Santos C, Trevino-Villarreal HJ, Sepulveda R, Rogers R. Ghelfi E, et al. Proteome Sci. 2018 Mar 16;16:7. doi: 10.1186/s12953-018-0132-x. eCollection 2018. Proteome Sci. 2018. PMID: 29760588 Free PMC article.

82

Effects of the complete replacement of fish oil with linseed oil on growth, fatty acid composition, and protein expression in the Chinese mitten crab (Eriocheir sinensis).

Wei B, Yang Z, Cheng Y, Wang J, Zhou J. Wei B, et al. Proteome Sci. 2018 Mar 15;16:6. doi: 10.1186/s12953-018-0135-7. eCollection 2018. Proteome Sci. 2018. PMID: 29568239 Free PMC article.

83

Profiling the interactome of protein kinase C ζ by proteomics and bioinformatics.

Hou C, Li Y, Liu H, Dang M, Qin G, Zhang N, Chen R. Hou C, et al. Proteome Sci. 2018 Feb 26;16:5. doi: 10.1186/s12953-018-0134-8. eCollection 2018. Proteome Sci. 2018. PMID: 29491746 Free PMC article.

84

Proteomic identification and characterization of hepatic glyoxalase 1 dysregulation in non-alcoholic fatty liver disease.

Spanos C, Maldonado EM, Fisher CP, Leenutaphong P, Oviedo-Orta E, Windridge D, Salguero FJ, Bermúdez-Fajardo A, Weeks ME, Evans C, Corfe BM, Rabbani N, Thornalley PJ, Miller MH, Wang H, Dillon JF, Quaglia A, Dhawan A, Fitzpatrick E, Moore JB. Spanos C, et al. Proteome Sci. 2018 Feb 14;16:4. doi: 10.1186/s12953-018-0131-y. eCollection 2018. Proteome Sci. 2018. PMID: 29456458 Free PMC article.

85

Effect of ovarian cancer ascites on SKOV-3 cells proteome: new proteins associated with aggressive phenotype in epithelial ovarian cancer.

Toledo-Leyva A, Villegas-Pineda JC, Encarnación-Guevara S, Gallardo-Rincón D, Talamás-Rohana P. Toledo-Leyva A, et al. Proteome Sci. 2018 Feb 13;16:3. doi: 10.1186/s12953-018-0133-9. eCollection 2018. Proteome Sci. 2018. PMID: 29456457 Free PMC article.

86

Proteomic identification of moesin upon exposure to acrolein.

Lee PH, Kim BG, Lee SH, Leikauf GD, Jang AS. Lee PH, et al. Proteome Sci. 2018 Jan 17;16:2. doi: 10.1186/s12953-017-0130-4. eCollection 2018. Proteome Sci. 2018. PMID: 29375273 Free PMC article.

87

Chemical proteomics, an integrated research engine for exploring drug-target-phenotype interactions.

Kwon HJ, Karuso P. Kwon HJ, et al. Proteome Sci. 2018 Jan 9;16:1. doi: 10.1186/s12953-017-0129-x. eCollection 2018. Proteome Sci. 2018. PMID: 29339928 Free PMC article. No abstract available.

88

Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae.

Oh Y, Robertson SL, Parker J, Muddiman DC, Dean RA. Oh Y, et al. Proteome Sci. 2017 Nov 13;15:20. doi: 10.1186/s12953-017-0128-y. eCollection 2017. Proteome Sci. 2017. PMID: 29158724 Free PMC article.

89

Proteomic analysis of early salt stress responsive proteins in alfalfa roots and shoots.

Xiong J, Sun Y, Yang Q, Tian H, Zhang H, Liu Y, Chen M. Xiong J, et al. Proteome Sci. 2017 Oct 30;15:19. doi: 10.1186/s12953-017-0127-z. eCollection 2017. Proteome Sci. 2017. PMID: 29093645 Free PMC article.

90

Iron overload down-regulates the expression of the HIV-1 Rev cofactor eIF5A in infected T lymphocytes.

Mancone C, Grimaldi A, Refolo G, Abbate I, Rozera G, Benelli D, Fimia GM, Barnaba V, Tripodi M, Piacentini M, Ciccosanti F. Mancone C, et al. Proteome Sci. 2017 Aug 4;15:18. doi: 10.1186/s12953-017-0126-0. eCollection 2017. Proteome Sci. 2017. PMID: 28785172 Free PMC article.

91

Examining the influence of specificity ligands and ATP-competitive ligands on the overall effectiveness of bivalent kinase inhibitors.

Wong ML, Murphy J, Harrington E, Gower CM, Jain RK, Schirle M, Thomas JR. Wong ML, et al. Proteome Sci. 2017 Jul 17;15:17. doi: 10.1186/s12953-017-0125-1. eCollection 2016. Proteome Sci. 2017. PMID: 28725163 Free PMC article.

92

Daptomycin, a last-resort antibiotic, binds ribosomal protein S19 in humans.

Gotsbacher MP, Cho S, Kwon HJ, Karuso P. Gotsbacher MP, et al. Proteome Sci. 2017 Jul 1;15:16. doi: 10.1186/s12953-017-0124-2. eCollection 2016. Proteome Sci. 2017. PMID: 28680364 Free PMC article.

93

Tetrazine ligation for chemical proteomics.

Kang K, Park J, Kim E. Kang K, et al. Proteome Sci. 2017 Jun 26;15:15. doi: 10.1186/s12953-017-0121-5. eCollection 2016. Proteome Sci. 2017. PMID: 28674480 Free PMC article. Review.

94

Photo-affinity labeling (PAL) in chemical proteomics: a handy tool to investigate protein-protein interactions (PPIs).

Murale DP, Hong SC, Haque MM, Lee JS. Murale DP, et al. Proteome Sci. 2017 Jun 24;15:14. doi: 10.1186/s12953-017-0123-3. eCollection 2016. Proteome Sci. 2017. PMID: 28652856 Free PMC article. Review.

95

Thermal proteome profiling: unbiased assessment of protein state through heat-induced stability changes.

Mateus A, Määttä TA, Savitski MM. Mateus A, et al. Proteome Sci. 2017 Jun 24;15:13. doi: 10.1186/s12953-017-0122-4. eCollection 2016. Proteome Sci. 2017. PMID: 28652855 Free PMC article. Review.

96

The hepatocyte proteome in organotypic rat liver models and the influence of the local microenvironment.

Vu LT, Orbach SM, Ray WK, Cassin ME, Rajagopalan P, Helm RF. Vu LT, et al. Proteome Sci. 2017 Jun 20;15:12. doi: 10.1186/s12953-017-0120-6. eCollection 2016. Proteome Sci. 2017. PMID: 28649179 Free PMC article.

97

Characterisation of the circulating acellular proteome of healthy sheep using LC-MS/MS-based proteomics analysis of serum.

Chemonges S, Gupta R, Mills PC, Kopp SR, Sadowski P. Chemonges S, et al. Proteome Sci. 2017 Jun 10;15:11. doi: 10.1186/s12953-017-0119-z. eCollection 2016. Proteome Sci. 2017. PMID: 28615994 Free PMC article.

98

The effect of microbial challenge on the intestinal proteome of broiler chickens.

O'Reilly EL, Burchmore RJ, Sparks NH, Eckersall PD. O'Reilly EL, et al. Proteome Sci. 2017 May 30;15:10. doi: 10.1186/s12953-017-0118-0. eCollection 2016. Proteome Sci. 2017. PMID: 28572745 Free PMC article.

99

Water deficit mechanisms in perennial shrubs Cerasus humilis leaves revealed by physiological and proteomic analyses.

Yin Z, Ren J, Zhou L, Sun L, Wang J, Liu Y, Song X. Yin Z, et al. Proteome Sci. 2017 May 8;15:9. doi: 10.1186/s12953-017-0117-1. eCollection 2016. Proteome Sci. 2017. PMID: 28503099 Free PMC article.

100

Merging clinical chemistry biomarker data with a COPD database - building a clinical infrastructure for proteomic studies.

Eriksson J, Andersson S, Appelqvist R, Wieslander E, Truedsson M, Bugge M, Malm J, Dahlbäck M, Andersson B, Fehniger TE, Marko-Varga G. Eriksson J, et al. Proteome Sci. 2017 Apr 21;15:8. doi: 10.1186/s12953-017-0116-2. eCollection 2016. Proteome Sci. 2017. PMID: 28439209 Free PMC article.

101

Proteomic profiling of HBV infected liver biopsies with different fibrotic stages.

Katrinli S, Ozdil K, Sahin A, Ozturk O, Kir G, Baykal AT, Akgun E, Sarac OS, Sokmen M, Doğanay HL, Dinler Doğanay G. Katrinli S, et al. Proteome Sci. 2017 Apr 20;15:7. doi: 10.1186/s12953-017-0114-4. eCollection 2016. Proteome Sci. 2017. PMID: 28439208 Free PMC article.

102

Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice.

Morino K, Kimizu M, Fujiwara M. Morino K, et al. Proteome Sci. 2017 Apr 13;15:6. doi: 10.1186/s12953-017-0115-3. eCollection 2016. Proteome Sci. 2017. PMID: 28413359 Free PMC article.

103

Proteomic analysis of microparticles isolated from malaria positive blood samples.

Antwi-Baffour S, Adjei JK, Agyemang-Yeboah F, Annani-Akollor M, Kyeremeh R, Asare GA, Gyan B. Antwi-Baffour S, et al. Proteome Sci. 2017 Mar 24;15:5. doi: 10.1186/s12953-017-0113-5. eCollection 2016. Proteome Sci. 2017. PMID: 28352210 Free PMC article.

104

Protein profiles of hatchery egg shell membrane.

Rath NC, Liyanage R, Makkar SK, Lay JO Jr. Rath NC, et al. Proteome Sci. 2017 Mar 3;15:4. doi: 10.1186/s12953-017-0112-6. eCollection 2016. Proteome Sci. 2017. PMID: 28270742 Free PMC article.

105

Proteome changes in the small intestinal mucosa of growing pigs with dietary supplementation of non-starch polysaccharide enzymes.

Zhang J, Gao Y, Lu Q, Sa R, Zhang H. Zhang J, et al. Proteome Sci. 2017 Jan 10;15:3. doi: 10.1186/s12953-016-0109-6. eCollection 2016. Proteome Sci. 2017. PMID: 28077931 Free PMC article.

106

Overgrazing induces alterations in the hepatic proteome of sheep (Ovis aries): an iTRAQ-based quantitative proteomic analysis.

Ren W, Hou X, Wang Y, Badgery W, Li X, Ding Y, Guo H, Wu Z, Hu N, Kong L, Chang C, Jiang C, Zhang J. Ren W, et al. Proteome Sci. 2017 Jan 5;15:2. doi: 10.1186/s12953-016-0111-z. eCollection 2016. Proteome Sci. 2017. PMID: 28149202 Free PMC article.

107

An interactomics overview of the human and bovine milk proteome over lactation.

Zhang L, van Dijk ADJ, Hettinga K. Zhang L, et al. Proteome Sci. 2017 Jan 5;15:1. doi: 10.1186/s12953-016-0110-0. eCollection 2016. Proteome Sci. 2017. PMID: 28149201 Free PMC article.

108

Informed baseline subtraction of proteomic mass spectrometry data aided by a novel sliding window algorithm.

Stanford TE, Bagley CJ, Solomon PJ. Stanford TE, et al. Proteome Sci. 2016 Dec 7;14:19. doi: 10.1186/s12953-016-0107-8. eCollection 2016. Proteome Sci. 2016. PMID: 27980460 Free PMC article.

109

Proteomic based approach for characterizing 4-hydroxy-2-nonenal induced oxidation of buffalo (Bubalus bubalis) and goat (Capra hircus) meat myoglobins.

Maheswarappa NB, Rani KU, Kumar YP, Kulkarni VV, Rapole S. Maheswarappa NB, et al. Proteome Sci. 2016 Nov 16;14:18. doi: 10.1186/s12953-016-0108-7. eCollection 2016. Proteome Sci. 2016. PMID: 27891064 Free PMC article.

110

Follicular fluid biomarkers for human in vitro fertilization outcome: Proof of principle.

Chen F, Spiessens C, D'Hooghe T, Peeraer K, Carpentier S. Chen F, et al. Proteome Sci. 2016 Nov 14;14:17. doi: 10.1186/s12953-016-0106-9. eCollection 2016. Proteome Sci. 2016. PMID: 27895531 Free PMC article.

111

iTRAQ-based proteomic analysis of myofibrillar contents and relevant synthesis and proteolytic proteins in soleus muscle of hibernating Daurian ground squirrels (Spermophilus dauricus).

Chang H, Jiang SF, Dang K, Wang HP, Xu SH, Gao YF. Chang H, et al. Proteome Sci. 2016 Nov 8;14:16. doi: 10.1186/s12953-016-0105-x. eCollection 2016. Proteome Sci. 2016. PMID: 27833457 Free PMC article.

112

Multi-omics analysis on the pathogenicity of Enterobacter cloacae ENHKU01 isolated from sewage outfalls along the Ningbo coastline.

Zhang D, He W, Tong Q, Zhou J, Su X. Zhang D, et al. Proteome Sci. 2016 Oct 18;14:15. doi: 10.1186/s12953-016-0104-y. eCollection 2016. Proteome Sci. 2016. PMID: 27777513 Free PMC article.

113

Proteome profiling reveals insights into cold-tolerant growth in sea buckthorn.

He C, Gao G, Zhang J, Duan A, Luo H. He C, et al. Proteome Sci. 2016 Oct 7;14:14. doi: 10.1186/s12953-016-0103-z. eCollection 2016. Proteome Sci. 2016. PMID: 27761102 Free PMC article.

114

Comparative proteomic analyses of Asian cotton ovules with attached fibers in the early stages of fiber elongation process.

Zhang B, Du SJ, Hu J, Miao D, Liu JY. Zhang B, et al. Proteome Sci. 2016 Sep 8;14(1):13. doi: 10.1186/s12953-016-0101-1. eCollection 2016. Proteome Sci. 2016. PMID: 27610046 Free PMC article.

115

Identifying EGFR mutation-induced drug resistance based on alpha shape model analysis of the dynamics.

Ma L, Zou B, Yan H. Ma L, et al. Proteome Sci. 2016 Sep 8;14(1):12. doi: 10.1186/s12953-016-0102-0. eCollection 2016. Proteome Sci. 2016. PMID: 27610045 Free PMC article.

116

Removal of SDS from biological protein digests for proteomic analysis by mass spectrometry.

Ilavenil S, Al-Dhabi NA, Srigopalram S, Kim YO, Agastian P, Baaru R, Choi KC, Arasu MV, Park CG, Park KH. Ilavenil S, et al. Proteome Sci. 2016 Sep 6;14(1):11. doi: 10.1186/s12953-016-0098-5. eCollection 2016. Proteome Sci. 2016. PMID: 27601941 Free PMC article.

117

Differential proteins among normal cervix cells and cervical cancer cells with HPV-16 infection, through mass spectrometry-based Proteomics (2D-DIGE) in women from Southern México.

Serafín-Higuera I, Garibay-Cerdenares OL, Illades-Aguiar B, Flores-Alfaro E, Jiménez-López MA, Sierra-Martínez P, Alarcón-Romero Ldel C. Serafín-Higuera I, et al. Proteome Sci. 2016 Sep 5;14(1):10. doi: 10.1186/s12953-016-0099-4. eCollection 2016. Proteome Sci. 2016. PMID: 27601940 Free PMC article.

118

Comparative proteome analysis of abdominal adipose tissues between fat and lean broilers.

Wu CY, Wu YY, Liu CD, Wang YX, Na W, Wang N, Li H. Wu CY, et al. Proteome Sci. 2016 Sep 1;14(1):9. doi: 10.1186/s12953-016-0100-2. eCollection 2016. Proteome Sci. 2016. PMID: 27594807 Free PMC article.

119

Investigation of proteome changes in osteoclastogenesis in low serum culture system using quantitative proteomics.

Xiong Q, Zhang L, Zhan S, Ge W, Tang P. Xiong Q, et al. Proteome Sci. 2016 Mar 31;14:8. doi: 10.1186/s12953-016-0097-6. eCollection 2016. Proteome Sci. 2016. PMID: 27034619 Free PMC article.

120

The association of plasma cystatin C proteoforms with diabetic chronic kidney disease.

Yassine HN, Trenchevska O, Dong Z, Bashawri Y, Koska J, Reaven PD, Nelson RW, Nedelkov D. Yassine HN, et al. Proteome Sci. 2016 Mar 25;14:7. doi: 10.1186/s12953-016-0096-7. eCollection 2016. Proteome Sci. 2016. PMID: 27019641 Free PMC article.

121

Stathmin involvement in the maternal embryonic leucine zipper kinase pathway in glioblastoma.

Marie SK, Oba-Shinjo SM, da Silva R, Gimenez M, Nunes Reis G, Tassan JP, Rosa JC, Uno M. Marie SK, et al. Proteome Sci. 2016 Mar 11;14:6. doi: 10.1186/s12953-016-0094-9. eCollection 2016. Proteome Sci. 2016. PMID: 26973435 Free PMC article.

122

Analysis of the immune response of human dendritic cells to Mycobacterium tuberculosis by quantitative proteomics.

Kuo CP, Chang KS, Hsu JL, Tsai IF, Lin AB, Wei TY, Wu CL, Lu YT. Kuo CP, et al. Proteome Sci. 2016 Mar 8;14:5. doi: 10.1186/s12953-016-0095-8. eCollection 2016. Proteome Sci. 2016. PMID: 26957948 Free PMC article.

123

Label-free proteomic methodology for the analysis of human kidney stone matrix composition.

Witzmann FA, Evan AP, Coe FL, Worcester EM, Lingeman JE, Williams JC Jr. Witzmann FA, et al. Proteome Sci. 2016 Feb 27;14:4. doi: 10.1186/s12953-016-0093-x. eCollection 2016. Proteome Sci. 2016. PMID: 26924944 Free PMC article.

124

Quantitative succinylome analysis in the liver of non-alcoholic fatty liver disease rat model.

Cheng Y, Hou T, Ping J, Chen G, Chen J. Cheng Y, et al. Proteome Sci. 2016 Feb 3;14:3. doi: 10.1186/s12953-016-0092-y. eCollection 2016. Proteome Sci. 2016. PMID: 26843850 Free PMC article.

125

Secretome analysis of rice suspension-cultured cells infected by Xanthomonas oryzae pv.oryza (Xoo).

Chen X, Deng Z, Yu C, Yan C, Chen J. Chen X, et al. Proteome Sci. 2016 Feb 2;14:2. doi: 10.1186/s12953-016-0091-z. eCollection 2016. Proteome Sci. 2016. PMID: 26839515 Free PMC article.

126

Isolation and characterization of Bradykinin potentiating peptides from Agkistrodon bilineatus venom.

Munawar A, Zahid A, Negm A, Akrem A, Spencer P, Betzel C. Munawar A, et al. Proteome Sci. 2016 Jan 14;14:1. doi: 10.1186/s12953-016-0090-0. eCollection 2016. Proteome Sci. 2016. PMID: 26770072 Free PMC article.

127

Analysis of protein expression in periodontal pocket tissue: a preliminary study.

Monari E, Cuoghi A, Bellei E, Bergamini S, Lucchi A, Tomasi A, Cortellini P, Zaffe D, Bertoldi C. Monari E, et al. Proteome Sci. 2015 Dec 30;13:33. doi: 10.1186/s12953-015-0089-y. eCollection 2015. Proteome Sci. 2015. PMID: 26719749 Free PMC article.

128

Gender-specific effects of intrauterine growth restriction on the adipose tissue of adult rats: a proteomic approach.

de Souza AP, Pedroso AP, Watanabe RL, Dornellas AP, Boldarine VT, Laure HJ, do Nascimento CM, Oyama LM, Rosa JC, Ribeiro EB. de Souza AP, et al. Proteome Sci. 2015 Dec 2;13:32. doi: 10.1186/s12953-015-0088-z. eCollection 2015. Proteome Sci. 2015. PMID: 26633942 Free PMC article.

129

Hepatocytes respond differently to major dietary trans fatty acid isomers, elaidic acid and trans-vaccenic acid.

Krogager TP, Nielsen LV, Kahveci D, Dyrlund TF, Scavenius C, Sanggaard KW, Enghild JJ. Krogager TP, et al. Proteome Sci. 2015 Dec 1;13:31. doi: 10.1186/s12953-015-0084-3. eCollection 2015. Proteome Sci. 2015. PMID: 26628894 Free PMC article.

130

Alteration of actin dependent signaling pathways associated with membrane microdomains in hyperlipidemia.

Suica VI, Uyy E, Boteanu RM, Ivan L, Antohe F. Suica VI, et al. Proteome Sci. 2015 Dec 1;13:30. doi: 10.1186/s12953-015-0087-0. eCollection 2015. Proteome Sci. 2015. PMID: 26628893 Free PMC article.

131

The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata).

Mann K. Mann K. Proteome Sci. 2015 Dec 1;13:29. doi: 10.1186/s12953-015-0086-1. eCollection 2015. Proteome Sci. 2015. PMID: 26628892 Free PMC article.

132

Differential abundance analysis of mesocarp protein from high- and low-yielding oil palms associates non-oil biosynthetic enzymes to lipid biosynthesis.

Ooi TE, Yeap WC, Daim LD, Ng BZ, Lee FC, Othman AM, Appleton DR, Chew FT, Kulaveerasingam H. Ooi TE, et al. Proteome Sci. 2015 Nov 26;13:28. doi: 10.1186/s12953-015-0085-2. eCollection 2015. Proteome Sci. 2015. PMID: 26617468 Free PMC article.

133

A quantitative shotgun proteomics analysis of germinated rice embryos and coleoptiles under low-temperature conditions.

Lee J, Lee W, Kwon SW. Lee J, et al. Proteome Sci. 2015 Nov 18;13:27. doi: 10.1186/s12953-015-0082-5. eCollection 2015. Proteome Sci. 2015. PMID: 26587012 Free PMC article.

134

Long-term consequences of in utero irradiated mice indicate proteomic changes in synaptic plasticity related signalling.

Kempf SJ, von Toerne C, Hauck SM, Atkinson MJ, Benotmane MA, Tapio S. Kempf SJ, et al. Proteome Sci. 2015 Nov 16;13:26. doi: 10.1186/s12953-015-0083-4. eCollection 2015. Proteome Sci. 2015. PMID: 26578848 Free PMC article.

135

Proteomic analysis of Pteropus alecto kidney cells in response to the viral mimic, Poly I:C.

Mok L, Wynne JW, Ford K, Shiell B, Bacic A, Michalski WP. Mok L, et al. Proteome Sci. 2015 Nov 2;13:25. doi: 10.1186/s12953-015-0081-6. eCollection 2015. Proteome Sci. 2015. PMID: 26535029 Free PMC article.

136

Profiling post-translational modifications of histones in human monocyte-derived macrophages.

Olszowy P, Donnelly MR, Lee C, Ciborowski P. Olszowy P, et al. Proteome Sci. 2015 Sep 24;13:24. doi: 10.1186/s12953-015-0080-7. eCollection 2015. Proteome Sci. 2015. PMID: 26412985 Free PMC article.

137

Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis.

Mikula M, Rubel T, Karczmarski J, Statkiewicz M, Bomsztyk K, Ostrowski J. Mikula M, et al. Proteome Sci. 2015 Sep 2;13:23. doi: 10.1186/s12953-015-0079-0. eCollection 2015. Proteome Sci. 2015. PMID: 26336360 Free PMC article.

138

Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomes.

Mann K, Mann M. Mann K, et al. Proteome Sci. 2015 Aug 27;13:22. doi: 10.1186/s12953-015-0078-1. eCollection 2015. Proteome Sci. 2015. PMID: 26312056 Free PMC article.

139

Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus.

Isowa Y, Sarashina I, Oshima K, Kito K, Hattori M, Endo K. Isowa Y, et al. Proteome Sci. 2015 Aug 15;13:21. doi: 10.1186/s12953-015-0077-2. eCollection 2015. Proteome Sci. 2015. PMID: 26279640 Free PMC article.

140

In-depth Proteomic mapping of mouse (Mus musculus) epididymal constructive basis for sperm maturation.

Liu X, Liu FJ, Jin SH, Shen XF, Wang YW. Liu X, et al. Proteome Sci. 2015 Jul 30;13:20. doi: 10.1186/s12953-015-0076-3. eCollection 2015. Proteome Sci. 2015. PMID: 26225126 Free PMC article.

141

iTRAQ-based proteomic profiling of Vibrio parahaemolyticus under various culture conditions.

Yang W, Ding D, Zhang C, Zhou J, Su X. Yang W, et al. Proteome Sci. 2015 Jul 29;13:19. doi: 10.1186/s12953-015-0075-4. eCollection 2015. Proteome Sci. 2015. PMID: 26225125 Free PMC article.

142

Discovery of porcine maternal factors related to nuclear reprogramming and early embryo development by proteomic analysis.

Zhao Q, Guo Z, Piao S, Wang C, An T. Zhao Q, et al. Proteome Sci. 2015 Jun 27;13:18. doi: 10.1186/s12953-015-0074-5. eCollection 2015. Proteome Sci. 2015. PMID: 26155198 Free PMC article.

143

Proteomic study of different culture medium serum volume fractions on RANKL-dependent RAW264.7 cells differentiating into osteoclasts.

Xiong Q, Zhang L, Xin L, Gao Y, Peng Y, Tang P, Ge W. Xiong Q, et al. Proteome Sci. 2015 May 2;13:16. doi: 10.1186/s12953-015-0073-6. eCollection 2015. Proteome Sci. 2015. PMID: 25969670 Free PMC article.

144

One-dimensional proteomic profiling of Danio rerio embryo vitellogenin to estimate quantum dot toxicity.

Petushkova NA, Kuznetsova GP, Larina OV, Kisrieva YS, Samenkova NF, Trifonova OP, Miroshnichenko YV, Zolotarev KV, Karuzina II, Ipatova OM, Lisitsa AV. Petushkova NA, et al. Proteome Sci. 2015 May 2;13:17. doi: 10.1186/s12953-015-0072-7. eCollection 2015. Proteome Sci. 2015. PMID: 25964724 Free PMC article.

145

Comparative proteomics of Bt-transgenic and non-transgenic cotton leaves.

Wang L, Wang X, Jin X, Jia R, Huang Q, Tan Y, Guo A. Wang L, et al. Proteome Sci. 2015 May 2;13:15. doi: 10.1186/s12953-015-0071-8. eCollection 2015. Proteome Sci. 2015. PMID: 25949214 Free PMC article.

146

Label-free quantitative phosphorylation analysis of human transgelin2 in Jurkat T cells reveals distinct phosphorylation patterns under PKA and PKC activation conditions.

Jang SH, Jun CD, Park ZY. Jang SH, et al. Proteome Sci. 2015 Mar 26;13:14. doi: 10.1186/s12953-015-0070-9. eCollection 2015. Proteome Sci. 2015. PMID: 25844069 Free PMC article.

147

Differential effects of dopamine signalling on long-term memory formation and consolidation in rodent brain.

Reichenbach N, Herrmann U, Kähne T, Schicknick H, Pielot R, Naumann M, Dieterich DC, Gundelfinger ED, Smalla KH, Tischmeyer W. Reichenbach N, et al. Proteome Sci. 2015 Mar 18;13:13. doi: 10.1186/s12953-015-0069-2. eCollection 2015. Proteome Sci. 2015. PMID: 25852303 Free PMC article.

148

A preliminary quantitative proteomic analysis of glioblastoma pseudoprogression.

Zhang P, Guo Z, Zhang Y, Gao Z, Ji N, Wang D, Zou L, Sun W, Zhang L. Zhang P, et al. Proteome Sci. 2015 Mar 12;13:12. doi: 10.1186/s12953-015-0066-5. eCollection 2015. Proteome Sci. 2015. PMID: 25866482 Free PMC article.

149

New interaction partners for Nek4.1 and Nek4.2 isoforms: from the DNA damage response to RNA splicing.

Basei FL, Meirelles GV, Righetto GL, Dos Santos Migueleti DL, Smetana JH, Kobarg J. Basei FL, et al. Proteome Sci. 2015 Feb 26;13:11. doi: 10.1186/s12953-015-0065-6. eCollection 2015. Proteome Sci. 2015. PMID: 25798074 Free PMC article.

150

Towards further defining the proteome of mouse saliva.

Blanchard AA, Ezzati P, Shamshurin D, Nistor AC, Leygue E, Wilkins JA, Myal Y. Blanchard AA, et al. Proteome Sci. 2015 Feb 25;13:10. doi: 10.1186/s12953-015-0068-3. eCollection 2015. Proteome Sci. 2015. PMID: 25762866 Free PMC article.

151

Proteome changes in the small intestinal mucosa of broilers (Gallus gallus) induced by high concentrations of atmospheric ammonia.

Zhang J, Li C, Tang X, Lu Q, Sa R, Zhang H. Zhang J, et al. Proteome Sci. 2015 Feb 21;13:9. doi: 10.1186/s12953-015-0067-4. eCollection 2015. Proteome Sci. 2015. PMID: 25741220 Free PMC article.

152

The proteome profiles of the olfactory bulb of juvenile, adult and aged rats - an ontogenetic study.

Wille M, Schümann A, Kreutzer M, Glocker MO, Wree A, Mutzbauer G, Schmitt O. Wille M, et al. Proteome Sci. 2015 Feb 15;13:8. doi: 10.1186/s12953-014-0058-x. eCollection 2015. Proteome Sci. 2015. PMID: 25709559 Free PMC article.

153

Examination of the skeletal proteome of the brittle star Ophiocoma wendtii reveals overall conservation of proteins but variation in spicule matrix proteins.

Seaver RW, Livingston BT. Seaver RW, et al. Proteome Sci. 2015 Feb 7;13:7. doi: 10.1186/s12953-015-0064-7. eCollection 2015. Proteome Sci. 2015. PMID: 25705131 Free PMC article.

154

Proteomic characterization of adrenal gland embryonic development reveals early initiation of steroid metabolism and reduction of the retinoic acid pathway.

Dihazi GH, Mueller GA, Asif AR, Eltoweissy M, Wessels JT, Dihazi H. Dihazi GH, et al. Proteome Sci. 2015 Feb 7;13:6. doi: 10.1186/s12953-015-0063-8. eCollection 2015. Proteome Sci. 2015. PMID: 25694770 Free PMC article.

155

Selection of a protein solubilization method suitable for phytopathogenic bacteria: a proteomics approach.

Malafaia CB, Guerra ML, Silva TD, Paiva PM, Souza EB, Correia MT, Silva MV. Malafaia CB, et al. Proteome Sci. 2015 Feb 5;13:5. doi: 10.1186/s12953-015-0062-9. eCollection 2015. Proteome Sci. 2015. PMID: 25670925 Free PMC article.

156

Interaction of peroxiredoxin V with dihydrolipoamide branched chain transacylase E2 (DBT) in mouse kidney under hypoxia.

Ahn SH, Yang HY, Tran GB, Kwon J, Son KY, Kim S, Dinh QT, Jung S, Lee HM, Cho KO, Lee TH. Ahn SH, et al. Proteome Sci. 2015 Feb 5;13:4. doi: 10.1186/s12953-014-0061-2. eCollection 2015. Proteome Sci. 2015. PMID: 25670924 Free PMC article.

157

Proteome changes induced by Pyrenophora tritici-repentis ToxA in both insensitive and sensitive wheat indicate senescence-like signaling.

Day J, Gietz RD, Rampitsch C. Day J, et al. Proteome Sci. 2015 Feb 5;13:3. doi: 10.1186/s12953-014-0060-3. eCollection 2015. Proteome Sci. 2015. PMID: 25663824 Free PMC article.

158

Proteomics analysis of urine reveals acute phase response proteins as candidate diagnostic biomarkers for prostate cancer.

Davalieva K, Kiprijanovska S, Komina S, Petrusevska G, Zografska NC, Polenakovic M. Davalieva K, et al. Proteome Sci. 2015 Jan 29;13(1):2. doi: 10.1186/s12953-014-0059-9. eCollection 2015. Proteome Sci. 2015. PMID: 25653573 Free PMC article.

159

Comparative proteomics analysis of differential proteins in respond to doxorubicin resistance in myelogenous leukemia cell lines.

Qinghong S, Shen G, Lina S, Yueming Z, Xiaoou L, Jianlin W, Chengyan H, Hongjun L, Haifeng Z. Qinghong S, et al. Proteome Sci. 2015 Jan 22;13(1):1. doi: 10.1186/s12953-014-0057-y. eCollection 2015. Proteome Sci. 2015. PMID: 25628518 Free PMC article.

160

Effects of mycophenolate mofetil on kidney function and phosphorylation status of renal proteins in Alport COL4A3-deficient mice.

Petrova DT, Schultze FC, Brandhorst G, Luchs KD, Lenz C, Urlaub H, Rubel D, Gross O, Walson PD, Oellerich M. Petrova DT, et al. Proteome Sci. 2014 Dec 10;12(1):56. doi: 10.1186/s12953-014-0056-z. eCollection 2014. Proteome Sci. 2014. PMID: 25525413 Free PMC article.

161

Proteomic analysis of seed storage proteins in wild rice species of the Oryza genus.

Jiang C, Cheng Z, Zhang C, Yu T, Zhong Q, Shen JQ, Huang X. Jiang C, et al. Proteome Sci. 2014 Nov 30;12(1):51. doi: 10.1186/s12953-014-0051-4. eCollection 2014. Proteome Sci. 2014. PMID: 25505850 Free PMC article.

162

New insights in the composition of extracellular vesicles from pancreatic cancer cells: implications for biomarkers and functions.

Klein-Scory S, Tehrani MM, Eilert-Micus C, Adamczyk KA, Wojtalewicz N, Schnölzer M, Hahn SA, Schmiegel W, Schwarte-Waldhoff I. Klein-Scory S, et al. Proteome Sci. 2014 Nov 18;12(1):50. doi: 10.1186/s12953-014-0050-5. eCollection 2014. Proteome Sci. 2014. PMID: 25469109 Free PMC article.

163

Proteomic analysis of rat cartilage: the identification of differentially expressed proteins in the early stages of osteoarthritis.

Parra-Torres NM, Cázares-Raga FE, Kouri JB. Parra-Torres NM, et al. Proteome Sci. 2014 Nov 18;12(1):55. doi: 10.1186/s12953-014-0055-0. eCollection 2014. Proteome Sci. 2014. PMID: 25435813 Free PMC article.

164

Unravelling associations between unassigned mass spectrometry peaks with frequent itemset mining techniques.

Vu TN, Mrzic A, Valkenborg D, Maes E, Lemière F, Goethals B, Laukens K. Vu TN, et al. Proteome Sci. 2014 Nov 18;12(1):54. doi: 10.1186/s12953-014-0054-1. eCollection 2014. Proteome Sci. 2014. PMID: 25429250 Free PMC article.

165

Promoter trapping method: transcription factor purification using human telomerase reverse transcriptase promoter.

Nagore LI, Zhou Y, Nadeau RJ, Jia Y, Jarrett HW. Nagore LI, et al. Proteome Sci. 2014 Nov 18;12(1):53. doi: 10.1186/s12953-014-0053-2. eCollection 2014. Proteome Sci. 2014. PMID: 25425973 Free PMC article.

166

Mass Spectrometric Immunoassay for the qualitative and quantitative analysis of the cytokine Macrophage Migration Inhibitory Factor (MIF).

Sherma ND, Borges CR, Trenchevska O, Jarvis JW, Rehder DS, Oran PE, Nelson RW, Nedelkov D. Sherma ND, et al. Proteome Sci. 2014 Oct 14;12(1):52. doi: 10.1186/s12953-014-0052-3. eCollection 2014. Proteome Sci. 2014. PMID: 25328446 Free PMC article.

167

The plasma proteomic signature as a strategic tool for early diagnosis of acute coronary syndrome.

Laborde CM, Alonso-Orgaz S, Mourino-Alvarez L, Moreu J, Vivanco F, Padial LR, Barderas MG. Laborde CM, et al. Proteome Sci. 2014 Oct 10;12:43. doi: 10.1186/1477-5956-12-43. eCollection 2014. Proteome Sci. 2014. PMID: 26038678 Free PMC article.

168

Impact of three commercial feed formulations on farmed gilthead sea bream (Sparus aurata, L.) metabolism as inferred from liver and blood serum proteomics.

Ghisaura S, Anedda R, Pagnozzi D, Biosa G, Spada S, Bonaglini E, Cappuccinelli R, Roggio T, Uzzau S, Addis MF. Ghisaura S, et al. Proteome Sci. 2014 Sep 24;12(1):44. doi: 10.1186/s12953-014-0044-3. eCollection 2014. Proteome Sci. 2014. PMID: 25342931 Free PMC article.

169

Potential serum biomarkers for glioblastoma diagnostic assessed by proteomic approaches.

Popescu ID, Codrici E, Albulescu L, Mihai S, Enciu AM, Albulescu R, Tanase CP. Popescu ID, et al. Proteome Sci. 2014 Sep 24;12(1):47. doi: 10.1186/s12953-014-0047-0. eCollection 2014. Proteome Sci. 2014. PMID: 25298751 Free PMC article.

170

Comparative proteomics and glycoproteomics of plasma proteins in Indian visceral leishmaniasis.

Bag AK, Saha S, Sundar S, Saha B, Chakrabarti A, Mandal C. Bag AK, et al. Proteome Sci. 2014 Sep 22;12(1):48. doi: 10.1186/s12953-014-0048-z. eCollection 2014. Proteome Sci. 2014. PMID: 25276097 Free PMC article.

171

Serum peptidome based biomarkers searching for monitoring minimal residual disease in adult acute lymphocytic leukemia.

Bai J, He A, Huang C, Yang J, Zhang W, Wang J, Yang Y, Zhang P, Zhang Y, Zhou F. Bai J, et al. Proteome Sci. 2014 Sep 16;12(1):49. doi: 10.1186/s12953-014-0049-y. eCollection 2014. Proteome Sci. 2014. PMID: 25317080 Free PMC article.

172

Proteomic study of sporadic inclusion body myositis.

Li K, Pu C, Huang X, Liu J, Mao Y, Lu X. Li K, et al. Proteome Sci. 2014 Sep 12;12(1):45. doi: 10.1186/s12953-014-0045-2. eCollection 2014. Proteome Sci. 2014. PMID: 25253997 Free PMC article.

173

Two dimensional gel phosphoproteome of peripheral blood mononuclear cells: comparison between two enrichment methods.

Rocchetti MT, Alfarano M, Varraso L, Di Paolo S, Papale M, Ranieri E, Grandaliano G, Gesualdo L. Rocchetti MT, et al. Proteome Sci. 2014 Sep 9;12(1):46. doi: 10.1186/s12953-014-0046-1. eCollection 2014. Proteome Sci. 2014. PMID: 25276096 Free PMC article.

174

Dynamic changes of urinary proteins in a focal segmental glomerulosclerosis rat model.

Zhao M, Li M, Li X, Shao C, Yin J, Gao Y. Zhao M, et al. Proteome Sci. 2014 Jul 21;12:42. doi: 10.1186/1477-5956-12-42. eCollection 2014. Proteome Sci. 2014. PMID: 25061428 Free PMC article.

175

Probing SH2-domains using Inhibitor Affinity Purification (IAP).

Höfener M, Heinzlmeir S, Kuster B, Sewald N. Höfener M, et al. Proteome Sci. 2014 Jul 16;12:41. doi: 10.1186/1477-5956-12-41. eCollection 2014. Proteome Sci. 2014. PMID: 25067910 Free PMC article.

176

Automated quantitative multiplex immunofluorescence in situ imaging identifies phospho-S6 and phospho-PRAS40 as predictive protein biomarkers for prostate cancer lethality.

Shipitsin M, Small C, Giladi E, Siddiqui S, Choudhury S, Hussain S, Huang YE, Chang H, Rimm DL, Berman DM, Nifong TP, Blume-Jensen P. Shipitsin M, et al. Proteome Sci. 2014 Jul 12;12:40. doi: 10.1186/1477-5956-12-40. eCollection 2014. Proteome Sci. 2014. PMID: 25075204 Free PMC article.

177

Colorectal cancer derived organotypic spheroids maintain essential tissue characteristics but adapt their metabolism in culture.

Rajcevic U, Knol JC, Piersma S, Bougnaud S, Fack F, Sundlisaeter E, Søndenaa K, Myklebust R, Pham TV, Niclou SP, Jiménez CR. Rajcevic U, et al. Proteome Sci. 2014 Jul 11;12:39. doi: 10.1186/1477-5956-12-39. eCollection 2014. Proteome Sci. 2014. PMID: 25075203 Free PMC article.

178

Comparative proteomic analysis of the membrane proteins of two Haemophilus parasuis strains to identify proteins that may help in habitat adaptation and pathogenesis.

Zhang L, Wen Y, Li Y, Wei X, Yan X, Wen X, Wu R, Huang X, Huang Y, Yan Q, Liu M, Cao S. Zhang L, et al. Proteome Sci. 2014 Jul 7;12:38. doi: 10.1186/1477-5956-12-38. eCollection 2014. Proteome Sci. 2014. PMID: 25057263 Free PMC article.

179

Comparative proteomic analysis of somatic embryo maturation in Carica papaya L.

Vale Ede M, Heringer AS, Barroso T, Ferreira AT, da Costa MN, Perales JE, Santa-Catarina C, Silveira V. Vale Ede M, et al. Proteome Sci. 2014 Jun 26;12:37. doi: 10.1186/1477-5956-12-37. eCollection 2014. Proteome Sci. 2014. PMID: 25076862 Free PMC article.

180

PhosFox: a bioinformatics tool for peptide-level processing of LC-MS/MS-based phosphoproteomic data.

Söderholm S, Hintsanen P, Öhman T, Aittokallio T, Nyman TA. Söderholm S, et al. Proteome Sci. 2014 Jun 26;12:36. doi: 10.1186/1477-5956-12-36. eCollection 2014. Proteome Sci. 2014. PMID: 25028575 Free PMC article.

181

Comparative secretome analysis of Streptomyces scabiei during growth in the presence or absence of potato suberin.

Komeil D, Padilla-Reynaud R, Lerat S, Simao-Beaunoir AM, Beaulieu C. Komeil D, et al. Proteome Sci. 2014 Jun 25;12:35. doi: 10.1186/1477-5956-12-35. eCollection 2014. Proteome Sci. 2014. PMID: 25028574 Free PMC article.

182

Proteomic analysis of Cucumis sativus cotyledons after glucohexaose treatment as a part of ROS accumulation related resistance mechanism.

Hao Y, Lin C, Fan H, Yu Y, Li N, Chen S. Hao Y, et al. Proteome Sci. 2014 Jun 17;12:34. doi: 10.1186/1477-5956-12-34. eCollection 2014. Proteome Sci. 2014. PMID: 25028573 Free PMC article.

183

Examination of the leaf proteome during flooding stress and the induction of programmed cell death in maize.

Chen Y, Chen X, Wang H, Bao Y, Zhang W. Chen Y, et al. Proteome Sci. 2014 Jun 11;12:33. doi: 10.1186/1477-5956-12-33. eCollection 2014. Proteome Sci. 2014. PMID: 25028572 Free PMC article.

184

Inflammation: an important parameter in the search of prostate cancer biomarkers.

Bergamini S, Bellei E, Reggiani Bonetti L, Monari E, Cuoghi A, Borelli F, Sighinolfi MC, Bianchi G, Ozben T, Tomasi A. Bergamini S, et al. Proteome Sci. 2014 Jun 9;12:32. doi: 10.1186/1477-5956-12-32. eCollection 2014. Proteome Sci. 2014. PMID: 24944525 Free PMC article.

185

Protein phosphorylation differs significantly among ontogenetic phases in Malus seedlings.

Wang Y, Wang Y, Zhao YB, Chen DM, Han ZH, Zhang XZ. Wang Y, et al. Proteome Sci. 2014 May 25;12:31. doi: 10.1186/1477-5956-12-31. eCollection 2014. Proteome Sci. 2014. PMID: 24904238 Free PMC article.

186

Pepsin-pancreatin protein hydrolysates from extruded amaranth inhibit markers of atherosclerosis in LPS-induced THP-1 macrophages-like human cells by reducing expression of proteins in LOX-1 signaling pathway.

Montoya-Rodríguez A, Milán-Carrillo J, Dia VP, Reyes-Moreno C, González de Mejía E. Montoya-Rodríguez A, et al. Proteome Sci. 2014 May 19;12:30. doi: 10.1186/1477-5956-12-30. eCollection 2014. Proteome Sci. 2014. PMID: 24891839 Free PMC article.

187

Protein expression and transcription profiles of three strains of Aeromonas salmonicida ssp. salmonicida under normal and iron-limited culture conditions.

Menanteau-Ledouble S, Kattlun J, Nöbauer K, El-Matbouli M. Menanteau-Ledouble S, et al. Proteome Sci. 2014 May 19;12:29. doi: 10.1186/1477-5956-12-29. eCollection 2014. Proteome Sci. 2014. PMID: 24872729 Free PMC article.

188

The Lottia gigantea shell matrix proteome: re-analysis including MaxQuant iBAQ quantitation and phosphoproteome analysis.

Mann K, Edsinger E. Mann K, et al. Proteome Sci. 2014 May 18;12:28. doi: 10.1186/1477-5956-12-28. eCollection 2014. Proteome Sci. 2014. PMID: 25018669 Free PMC article.

189

Assessment of vascular endothelial growth factor in formalin fixed, paraffin embedded colon cancer specimens by means of a well-based reverse phase protein array.

Chung JY, Braunschweig T, Hong SM, Kwon DS, Eo SH, Cho H, Hewitt SM. Chung JY, et al. Proteome Sci. 2014 May 13;12:27. doi: 10.1186/1477-5956-12-27. eCollection 2014. Proteome Sci. 2014. PMID: 24883046 Free PMC article.

190

Forced expression of S100A10 reduces sensitivity to oxaliplatin in colorectal cancer cells.

Suzuki S, Tanigawara Y. Suzuki S, et al. Proteome Sci. 2014 May 9;12:26. doi: 10.1186/1477-5956-12-26. eCollection 2014. Proteome Sci. 2014. PMID: 24851084 Free PMC article.

191

Proteomic analysis of laser capture microscopy purified myotendinous junction regions from muscle sections.

Can T, Faas L, Ashford DA, Dowle A, Thomas J, O'Toole P, Blanco G. Can T, et al. Proteome Sci. 2014 May 7;12:25. doi: 10.1186/1477-5956-12-25. eCollection 2014. Proteome Sci. 2014. PMID: 25071420 Free PMC article.

192

Recovery of brain biomarkers following peroxisome proliferator-activated receptor agonist neuroprotective treatment before ischemic stroke.

Gelé P, Vingtdeux V, Potey C, Drobecq H, Ghestem A, Melnyk P, Buée L, Sergeant N, Bordet R. Gelé P, et al. Proteome Sci. 2014 May 6;12:24. doi: 10.1186/1477-5956-12-24. eCollection 2014. Proteome Sci. 2014. PMID: 24944524 Free PMC article.

193

Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes.

Fengos G, Schmidt A, Martin K, Fluri E, Aebersold R, Iber D, Pertz O. Fengos G, et al. Proteome Sci. 2014 May 1;12:23. doi: 10.1186/1477-5956-12-23. eCollection 2014. Proteome Sci. 2014. PMID: 24987309 Free PMC article.

194

Quantitative proteomics analysis of early recurrence/metastasis of huge hepatocellular carcinoma following radical resection.

Huang X, Zeng Y, Xing X, Zeng J, Gao Y, Cai Z, Xu B, Liu X, Huang A, Liu J. Huang X, et al. Proteome Sci. 2014 May 1;12:22. doi: 10.1186/1477-5956-12-22. eCollection 2014. Proteome Sci. 2014. PMID: 24839399 Free PMC article.

195

Proteomic analysis of Staphylococcus aureus biofilm cells grown under physiologically relevant fluid shear stress conditions.

Islam N, Kim Y, Ross JM, Marten MR. Islam N, et al. Proteome Sci. 2014 Apr 30;12:21. doi: 10.1186/1477-5956-12-21. eCollection 2014. Proteome Sci. 2014. PMID: 24855455 Free PMC article.

196

The rat striatum responds to nigro-striatal degeneration via the increased expression of proteins associated with growth and regeneration of neuronal circuitry.

Fuller HR, Hurtado ML, Wishart TM, Gates MA. Fuller HR, et al. Proteome Sci. 2014 Apr 28;12:20. doi: 10.1186/1477-5956-12-20. eCollection 2014. Proteome Sci. 2014. PMID: 24834013 Free PMC article.

197

Smolenski GA, Broadhurst MK, Stelwagen K, Haigh BJ, Wheeler TT. Smolenski GA, et al. Proteome Sci. 2014 Apr 11;12:19. doi: 10.1186/1477-5956-12-19. eCollection 2014. Proteome Sci. 2014. PMID: 24721702 Free PMC article.

198

An improved peptide-spectral matching algorithm through distributed search over multiple cores and multiple CPUs.

Sun J, Chen B, Wu FX. Sun J, et al. Proteome Sci. 2014 Apr 11;12:18. doi: 10.1186/1477-5956-12-18. eCollection 2014. Proteome Sci. 2014. PMID: 24721686 Free PMC article.

199

Maize IgE binding proteins: each plant a different profile?

Fonseca C, Planchon S, Pinheiro C, Renaut J, Ricardo CP, Oliveira MM, Batista R. Fonseca C, et al. Proteome Sci. 2014 Mar 20;12(1):17. doi: 10.1186/1477-5956-12-17. Proteome Sci. 2014. PMID: 24650160 Free PMC article.

200

Phosphoproteomic analysis of the non-seed vascular plant model Selaginella moellendorffii.

Chen X, Chan WL, Zhu FY, Lo C. Chen X, et al. Proteome Sci. 2014 Mar 17;12:16. doi: 10.1186/1477-5956-12-16. eCollection 2014. Proteome Sci. 2014. PMID: 24628833 Free PMC article.

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