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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2000 1
2001 1
2002 2
2003 2
2004 5
2005 4
2006 3
2007 3
2008 2
2009 9
2010 7
2011 8
2012 8
2013 6
2014 7
2015 4
2016 6
2017 11
2018 9
2019 18
2020 8
2021 17
2022 11
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144 results
Results by year
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Page 1
Comparative Genomics for Prokaryotes.
Setubal JC, Almeida NF, Wattam AR. Setubal JC, et al. Methods Mol Biol. 2018;1704:55-78. doi: 10.1007/978-1-4939-7463-4_3. Methods Mol Biol. 2018. PMID: 29277863 Review.
Phylogenomics.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Methods Mol Biol. 2018. PMID: 29277865 Review.
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Among authors: setubal jc. Nat Med. 2019 Apr;25(4):667-678. doi: 10.1038/s41591-019-0405-7. Epub 2019 Apr 1. Nat Med. 2019. PMID: 30936548 Free article.
Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism.
Fachi JL, Felipe JS, Pral LP, da Silva BK, Corrêa RO, de Andrade MCP, da Fonseca DM, Basso PJ, Câmara NOS, de Sales E Souza ÉL, Dos Santos Martins F, Guima SES, Thomas AM, Setubal JC, Magalhães YT, Forti FL, Candreva T, Rodrigues HG, de Jesus MB, Consonni SR, Farias ADS, Varga-Weisz P, Vinolo MAR. Fachi JL, et al. Among authors: setubal jc. Cell Rep. 2019 Apr 16;27(3):750-761.e7. doi: 10.1016/j.celrep.2019.03.054. Cell Rep. 2019. PMID: 30995474 Free article.
Comparative Metagenomics.
Maltez Thomas A, Prata Lima F, Maria Silva Moura L, Maria da Silva A, Dias-Neto E, Setubal JC. Maltez Thomas A, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:243-260. doi: 10.1007/978-1-4939-7463-4_8. Methods Mol Biol. 2018. PMID: 29277868
Editorial: Computational Methods for Microbiome Analysis.
Setubal JC, Stoye J, Dutilh BE. Setubal JC, et al. Front Genet. 2020 Dec 11;11:623897. doi: 10.3389/fgene.2020.623897. eCollection 2020. Front Genet. 2020. PMID: 33362871 Free PMC article. No abstract available.
Machine learning meets genome assembly.
Padovani de Souza K, Setubal JC, Ponce de Leon F de Carvalho AC, Oliveira G, Chateau A, Alves R. Padovani de Souza K, et al. Among authors: setubal jc. Brief Bioinform. 2019 Nov 27;20(6):2116-2129. doi: 10.1093/bib/bby072. Brief Bioinform. 2019. PMID: 30137230 Review.
Consent insufficient for data release-Response.
Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. Amann RI, et al. Among authors: setubal jc. Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. Science. 2019. PMID: 31048484 No abstract available.
Gene Phylogenies and Orthologous Groups.
Setubal JC, Stadler PF. Setubal JC, et al. Methods Mol Biol. 2018;1704:1-28. doi: 10.1007/978-1-4939-7463-4_1. Methods Mol Biol. 2018. PMID: 29277861
144 results