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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2000 1
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2004 5
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2007 3
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2009 9
2010 7
2011 8
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2013 6
2014 7
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2023 7
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166 results

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Page 1
Phylogenomics.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Methods Mol Biol. 2018. PMID: 29277865 Review.
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Among authors: setubal jc. Nat Med. 2019 Apr;25(4):667-678. doi: 10.1038/s41591-019-0405-7. Epub 2019 Apr 1. Nat Med. 2019. PMID: 30936548 Free PMC article.
Comparative Metagenomics.
Maltez Thomas A, Prata Lima F, Maria Silva Moura L, Maria da Silva A, Dias-Neto E, Setubal JC. Maltez Thomas A, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:243-260. doi: 10.1007/978-1-4939-7463-4_8. Methods Mol Biol. 2018. PMID: 29277868
Editorial: Computational Methods for Microbiome Analysis.
Setubal JC, Stoye J, Dutilh BE. Setubal JC, et al. Front Genet. 2020 Dec 11;11:623897. doi: 10.3389/fgene.2020.623897. eCollection 2020. Front Genet. 2020. PMID: 33362871 Free PMC article. No abstract available.
Comparative Genomics for Prokaryotes.
Setubal JC, Almeida NF, Wattam AR. Setubal JC, et al. Methods Mol Biol. 2018;1704:55-78. doi: 10.1007/978-1-4939-7463-4_3. Methods Mol Biol. 2018. PMID: 29277863 Review.
Machine learning meets genome assembly.
Padovani de Souza K, Setubal JC, Ponce de Leon F de Carvalho AC, Oliveira G, Chateau A, Alves R. Padovani de Souza K, et al. Among authors: setubal jc. Brief Bioinform. 2019 Nov 27;20(6):2116-2129. doi: 10.1093/bib/bby072. Brief Bioinform. 2019. PMID: 30137230 Review.
Step-by-Step Bacterial Genome Comparison.
Carhuaricra-Huaman D, Setubal JC. Carhuaricra-Huaman D, et al. Among authors: setubal jc. Methods Mol Biol. 2024;2802:107-134. doi: 10.1007/978-1-0716-3838-5_5. Methods Mol Biol. 2024. PMID: 38819558
A Guide to Phylogenomic Inference.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Among authors: setubal jc. Methods Mol Biol. 2024;2802:267-345. doi: 10.1007/978-1-0716-3838-5_11. Methods Mol Biol. 2024. PMID: 38819564
Comparative Analyses of Bacteriophage Genomes.
Rossi FPN, Flores VS, Uceda-Campos G, Amgarten DE, Setubal JC, da Silva AM. Rossi FPN, et al. Among authors: setubal jc. Methods Mol Biol. 2024;2802:427-453. doi: 10.1007/978-1-0716-3838-5_14. Methods Mol Biol. 2024. PMID: 38819567
166 results