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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2000 1
2001 1
2002 2
2003 2
2004 5
2005 4
2006 3
2007 3
2008 2
2009 9
2010 7
2011 8
2012 8
2013 6
2014 7
2015 4
2016 6
2017 11
2018 9
2019 18
2020 8
2021 17
2022 14
2023 7
2024 3

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157 results

Results by year

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Page 1
Comparative Genomics for Prokaryotes.
Setubal JC, Almeida NF, Wattam AR. Setubal JC, et al. Methods Mol Biol. 2018;1704:55-78. doi: 10.1007/978-1-4939-7463-4_3. Methods Mol Biol. 2018. PMID: 29277863 Review.
Phylogenomics.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Methods Mol Biol. 2018. PMID: 29277865 Review.
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Among authors: setubal jc. Nat Med. 2019 Apr;25(4):667-678. doi: 10.1038/s41591-019-0405-7. Epub 2019 Apr 1. Nat Med. 2019. PMID: 30936548 Free PMC article.
Comparative Metagenomics.
Maltez Thomas A, Prata Lima F, Maria Silva Moura L, Maria da Silva A, Dias-Neto E, Setubal JC. Maltez Thomas A, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:243-260. doi: 10.1007/978-1-4939-7463-4_8. Methods Mol Biol. 2018. PMID: 29277868
Machine learning meets genome assembly.
Padovani de Souza K, Setubal JC, Ponce de Leon F de Carvalho AC, Oliveira G, Chateau A, Alves R. Padovani de Souza K, et al. Among authors: setubal jc. Brief Bioinform. 2019 Nov 27;20(6):2116-2129. doi: 10.1093/bib/bby072. Brief Bioinform. 2019. PMID: 30137230 Review.
Editorial: Computational Methods for Microbiome Analysis.
Setubal JC, Stoye J, Dutilh BE. Setubal JC, et al. Front Genet. 2020 Dec 11;11:623897. doi: 10.3389/fgene.2020.623897. eCollection 2020. Front Genet. 2020. PMID: 33362871 Free PMC article. No abstract available.
COVID-19 induces more pronounced extracellular matrix deposition than other causes of ARDS.
de Souza Xavier Costa N, Ribeiro Júnior G, do Nascimento ECT, de Brito JM, Antonangelo L, Faria CS, Monteiro JS, Setubal JC, Pinho JRR, Pereira RV, Seelaender M, de Castro GS, Lima JDCC, de Almeida Monteiro RA, Duarte-Neto AN, Saldiva PHN, Ferraz da Silva LF, Dolhnikoff M, Mauad T. de Souza Xavier Costa N, et al. Among authors: setubal jc. Respir Res. 2023 Nov 14;24(1):281. doi: 10.1186/s12931-023-02555-7. Respir Res. 2023. PMID: 37964271 Free PMC article.
Consent insufficient for data release-Response.
Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. Amann RI, et al. Among authors: setubal jc. Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. Science. 2019. PMID: 31048484 No abstract available.
Comparative genomics analyses of citrus-associated bacteria.
Moreira LM, de Souza RF, Almeida NF Jr, Setubal JC, Oliveira JC, Furlan LR, Ferro JA, da Silva AC. Moreira LM, et al. Among authors: setubal jc. Annu Rev Phytopathol. 2004;42:163-84. doi: 10.1146/annurev.phyto.42.040803.140310. Annu Rev Phytopathol. 2004. PMID: 15283664 Review.
Toward unrestricted use of public genomic data.
Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I. Amann RI, et al. Among authors: setubal jc. Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. Science. 2019. PMID: 30679363 No abstract available.
157 results