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Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.
Avants BB, Epstein CL, Grossman M, Gee JC. Avants BB, et al. Med Image Anal. 2008 Feb;12(1):26-41. doi: 10.1016/j.media.2007.06.004. Epub 2007 Jun 23. Med Image Anal. 2008. PMID: 17659998 Free PMC article.
Our evaluation uses gold standard, human cortical segmentation to contrast SyN's performance with a related elastic method and with the standard ITK implementation of Thirion's Demons algorithm. ...This study indicates that SyN, with cross-correlation, is a reliable …
Our evaluation uses gold standard, human cortical segmentation to contrast SyN's performance with a related elastic method and with t …
Explicit B-spline regularization in diffeomorphic image registration.
Tustison NJ, Avants BB. Tustison NJ, et al. Front Neuroinform. 2013 Dec 23;7:39. doi: 10.3389/fninf.2013.00039. eCollection 2013. Front Neuroinform. 2013. PMID: 24409140 Free PMC article.
., 2009) can be viewed as a smoothing alternative in which explicit regularization is achieved through fast B-spline approximation. This characterization can be used to provide B-spline "flavored" diffeomorphic image registration solutions with several advantages. I …
., 2009) can be viewed as a smoothing alternative in which explicit regularization is achieved through fast B-spline approximation. T …
Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements.
Tustison NJ, Cook PA, Klein A, Song G, Das SR, Duda JT, Kandel BM, van Strien N, Stone JR, Gee JC, Avants BB. Tustison NJ, et al. Neuroimage. 2014 Oct 1;99:166-79. doi: 10.1016/j.neuroimage.2014.05.044. Epub 2014 May 29. Neuroimage. 2014. PMID: 24879923
To this end, we have developed the automated, volume-based Advanced Normalization Tools (ANTs) cortical thickness pipeline comprising well-vetted components such as SyGN (multivariate template construction), SyN (image registration), N4 (bias correction), Atropos (n-tissue …
To this end, we have developed the automated, volume-based Advanced Normalization Tools (ANTs) cortical thickness pipeline comprising well-v …
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.
Klein A, Andersson J, Ardekani BA, Ashburner J, Avants B, Chiang MC, Christensen GE, Collins DL, Gee J, Hellier P, Song JH, Jenkinson M, Lepage C, Rueckert D, Thompson P, Vercauteren T, Woods RP, Mann JJ, Parsey RV. Klein A, et al. Neuroimage. 2009 Jul 1;46(3):786-802. doi: 10.1016/j.neuroimage.2008.12.037. Epub 2009 Jan 13. Neuroimage. 2009. PMID: 19195496 Free PMC article.
More than 45,000 registrations between 80 manually labeled brains were performed by algorithms including: AIR, ANIMAL, ART, Diffeomorphic Demons, FNIRT, IRTK, JRD-fluid, ROMEO, SICLE, SyN, and four different SPM5 algorithms ("SPM2-type" and regular Normalization, Unified S …
More than 45,000 registrations between 80 manually labeled brains were performed by algorithms including: AIR, ANIMAL, ART, Diffeomorphic De …