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Page 1
Vaccine and Drug Ontology Studies (VDOS 2014).
Tao C, He Y, Arabandi S. Tao C, et al. J Biomed Semantics. 2016 Feb 25;7:6. doi: 10.1186/s13326-015-0039-8. eCollection 2016. J Biomed Semantics. 2016. PMID: 26918107 Free PMC article.
Over the last decade, tremendous efforts have been made in the biomedical ontology community to ontologically represent various areas associated with vaccines and drugs - extending existing clinical terminology systems such as SNOMED, RxNorm, NDF-RT, and MedDRA, developing new mo …
Over the last decade, tremendous efforts have been made in the biomedical ontology community to ontologically represent various areas associ …
Ontology-based Precision Vaccinology for Deep Mechanism Understanding and Precision Vaccine Development.
Xie J, Zi W, Li Z, He Y. Xie J, et al. Curr Pharm Des. 2021;27(7):900-910. doi: 10.2174/1381612826666201125112131. Curr Pharm Des. 2021. PMID: 33238868 Review.
Ontology in the informatics field is human- and machine-interpretable representation of entities and the relations among entities in a specific domain. The Vaccine Ontology (VO) and Ontology of Vaccine Adverse Events (OVAE) have been developed to support the standar …
Ontology in the informatics field is human- and machine-interpretable representation of entities and the relations among entities in a speci …
Ontology-Based Vaccine Adverse Event Representation and Analysis.
Xie J, He Y. Xie J, et al. Adv Exp Med Biol. 2017;1028:89-103. doi: 10.1007/978-981-10-6041-0_6. Adv Exp Med Biol. 2017. PMID: 29058218 Review.
By expanding the OAE and the community-based Vaccine Ontology (VO) (He et al., VO: vaccine ontology. In The 1st International Conference on Biomedical Ontology (ICBO-2009). ...
By expanding the OAE and the community-based Vaccine Ontology (VO) (He et al., VO: vaccine ontology. In The 1st …
Ontology-supported research on vaccine efficacy, safety and integrative biological networks.
He Y. He Y. Expert Rev Vaccines. 2014 Jul;13(7):825-41. doi: 10.1586/14760584.2014.923762. Epub 2014 Jun 7. Expert Rev Vaccines. 2014. PMID: 24909153 Free PMC article. Review.
Several community-based ontologies (including Vaccine Ontology, Ontology of Adverse Events and Ontology of Vaccine Adverse Events) have been developed to support vaccine and adverse event representation, classification, data integration, literature mining of host-va …
Several community-based ontologies (including Vaccine Ontology, Ontology of Adverse Events and Ontology of Vaccine Adverse Eve …
Mapping Vaccine Names in Clinical Trials to Vaccine Ontology using Cascaded Fine-Tuned Domain-Specific Language Models.
Li J, Li Y, Pan Y, Guo J, Sun Z, Li F, He Y, Tao C. Li J, et al. Res Sq [Preprint]. 2023 Sep 27:rs.3.rs-3362256. doi: 10.21203/rs.3.rs-3362256/v1. Res Sq. 2023. Update in: J Biomed Semantics. 2024 Aug 10;15(1):14. doi: 10.1186/s13326-024-00318-x PMID: 37841880 Free PMC article. Updated. Preprint.
The Vaccine Ontology (VO) is a community-based ontology that was developed to promote vaccine data standardization, integration, and computer-assisted reasoning. ...Further refinement was accomplished through fine-tuning using the Vaccine Ontology corp …
The Vaccine Ontology (VO) is a community-based ontology that was developed to promote vaccine data standardization, integratio …
Ontology-based representation and analysis of conditional vaccine immune responses using Omics data.
Huffman A, Ong E, Brunson T, Sanati N, Zheng J, Masci AM, Wu G, He Y. Huffman A, et al. CEUR Workshop Proc. 2023 Aug-Sep;3603:1-12. CEUR Workshop Proc. 2023. PMID: 39583065 Free PMC article.
We hypothesized that an integrative ontological representation of the data from these studies would enhance our understanding and analysis of these ImmPort vaccine studies, and with ontological classification and tools such as VIGET, we could further study the effects of differen …
We hypothesized that an integrative ontological representation of the data from these studies would enhance our understanding and analysis o …
Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models.
Li J, Li Y, Pan Y, Guo J, Sun Z, Li F, He Y, Tao C. Li J, et al. J Biomed Semantics. 2024 Aug 10;15(1):14. doi: 10.1186/s13326-024-00318-x. J Biomed Semantics. 2024. PMID: 39123237 Free PMC article.
The Vaccine Ontology (VO) is a community-based ontology that was developed to promote vaccine data standardization, integration, and computer-assisted reasoning. ...Further refinement was accomplished through fine-tuning using the Vaccine Ontology corp …
The Vaccine Ontology (VO) is a community-based ontology that was developed to promote vaccine data standardization, integratio …
Emerging vaccine informatics.
He Y, Rappuoli R, De Groot AS, Chen RT. He Y, et al. J Biomed Biotechnol. 2010;2010:218590. doi: 10.1155/2010/218590. Epub 2011 Jun 15. J Biomed Biotechnol. 2010. PMID: 21772787 Free PMC article. Review.
Computational literature mining and databases effectively process, mine, and store large amounts of vaccine literature and data. Vaccine Ontology (VO) has been initiated to integrate various vaccine data and support automated reasoning....
Computational literature mining and databases effectively process, mine, and store large amounts of vaccine literature and data. Vaccine …
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.
Hur J, Özgür A, He Y. Hur J, et al. J Biomed Semantics. 2017 Mar 14;8(1):12. doi: 10.1186/s13326-017-0122-4. J Biomed Semantics. 2017. PMID: 28288685 Free PMC article.
METHODS: In this study, we first extended the Vaccine Ontology (VO) to semantically represent various E. coli vaccines and genes used in the vaccine development. ...
METHODS: In this study, we first extended the Vaccine Ontology (VO) to semantically represent various E. coli vaccines and gen …
40 results