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Year Number of Results
2002 3
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2008 7
2009 2
2010 7
2011 6
2012 8
2013 8
2014 7
2015 9
2016 6
2017 13
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191 results

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Page 1
Formation of a β-Endorphin Corona Mitigates Alzheimer's Amyloidogenesis.
Sun Y, Andrikopoulos N, Zhang G, Liu Y, Liang X, Li D, Suo X, Wang Y, Li Y, Wang C, Li Y, Ke PC, Ding F. Sun Y, et al. Among authors: ke pc, ding f. Small. 2025 Jul;21(26):e2409392. doi: 10.1002/smll.202409392. Epub 2025 May 19. Small. 2025. PMID: 40384186 Free PMC article.
RNA-Puzzles Round V: blind predictions of 23 RNA structures.
Bu F, Adam Y, Adamiak RW, Antczak M, de Aquino BRH, Badepally NG, Batey RT, Baulin EF, Boinski P, Boniecki MJ, Bujnicki JM, Carpenter KA, Chacon J, Chen SJ, Chiu W, Cordero P, Das NK, Das R, Dawson WK, DiMaio F, Ding F, Dock-Bregeon AC, Dokholyan NV, Dror RO, Dunin-Horkawicz S, Eismann S, Ennifar E, Esmaeeli R, Farsani MA, Ferré-D'Amaré AR, Geniesse C, Ghanim GE, Guzman HV, Hood IV, Huang L, Jain DS, Jaryani F, Jin L, Joshi A, Karelina M, Kieft JS, Kladwang W, Kmiecik S, Koirala D, Kollmann M, Kretsch RC, Kurciński M, Li J, Li S, Magnus M, Masquida B, Moafinejad SN, Mondal A, Mukherjee S, Nguyen THD, Nikolaev G, Nithin C, Nye G, Pandaranadar Jeyeram IPN, Perez A, Pham P, Piccirilli JA, Pilla SP, Pluta R, Poblete S, Ponce-Salvatierra A, Popenda M, Popenda L, Pucci F, Rangan R, Ray A, Ren A, Sarzynska J, Sha CM, Stefaniak F, Su Z, Suddala KC, Szachniuk M, Townshend R, Trachman RJ 3rd, Wang J, Wang W, Watkins A, Wirecki TK, Xiao Y, Xiong P, Xiong Y, Yang J, Yesselman JD, Zhang J, Zhang Y, Zhang Z, Zhou Y, Zok T, Zhang D, Zhang S, Żyła A, Westhof E, Miao Z. Bu F, et al. Among authors: dokholyan nv, westhof e, ding f, zhang z. Nat Methods. 2025 Feb;22(2):399-411. doi: 10.1038/s41592-024-02543-9. Epub 2024 Dec 2. Nat Methods. 2025. PMID: 39623050 Free PMC article.
APOE regulates the transport of GM1.
Zhang DY, Wang J, Huang G, Langberg S, Ding F, Dokholyan NV. Zhang DY, et al. Among authors: dokholyan nv, ding f, huang g. bioRxiv [Preprint]. 2024 Apr 2:2024.04.02.587789. doi: 10.1101/2024.04.02.587789. bioRxiv. 2024. PMID: 38617316 Free PMC article. Preprint.
Remediation of Metal Oxide Nanotoxicity with a Functional Amyloid.
Wang Y, Liang X, Andrikopoulos N, Tang H, He F, Yin X, Li Y, Ding F, Peng G, Mortimer M, Ke PC. Wang Y, et al. Among authors: tang h, ding f, ke pc. Adv Sci (Weinh). 2024 Jun;11(23):e2310314. doi: 10.1002/advs.202310314. Epub 2024 Apr 6. Adv Sci (Weinh). 2024. PMID: 38582521 Free PMC article.
Endothelial leakiness elicited by amyloid protein aggregation.
Li Y, Ni N, Lee M, Wei W, Andrikopoulos N, Kakinen A, Davis TP, Song Y, Ding F, Leong DT, Ke PC. Li Y, et al. Among authors: lee m, ding f, ke pc. Nat Commun. 2024 Jan 19;15(1):613. doi: 10.1038/s41467-024-44814-1. Nat Commun. 2024. PMID: 38242873 Free PMC article.
Spike Protein Fragments Promote Alzheimer's Amyloidogenesis.
Cao S, Song Z, Rong J, Andrikopoulos N, Liang X, Wang Y, Peng G, Ding F, Ke PC. Cao S, et al. Among authors: ding f, ke pc. ACS Appl Mater Interfaces. 2023 Aug 30;15(34):40317-40329. doi: 10.1021/acsami.3c09815. Epub 2023 Aug 16. ACS Appl Mater Interfaces. 2023. PMID: 37585091 Free PMC article.
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models.
Gumna J, Antczak M, Adamiak RW, Bujnicki JM, Chen SJ, Ding F, Ghosh P, Li J, Mukherjee S, Nithin C, Pachulska-Wieczorek K, Ponce-Salvatierra A, Popenda M, Sarzynska J, Wirecki T, Zhang D, Zhang S, Zok T, Westhof E, Miao Z, Szachniuk M, Rybarczyk A. Gumna J, et al. Among authors: westhof e, ding f. Int J Mol Sci. 2022 Aug 25;23(17):9630. doi: 10.3390/ijms23179630. Int J Mol Sci. 2022. PMID: 36077037 Free PMC article.
Fuzzy supertertiary interactions within PSD-95 enable ligand binding.
Hamilton GL, Saikia N, Basak S, Welcome FS, Wu F, Kubiak J, Zhang C, Hao Y, Seidel CAM, Ding F, Sanabria H, Bowen ME. Hamilton GL, et al. Among authors: saikia n, ding f, bowen me, sanabria h. Elife. 2022 Sep 7;11:e77242. doi: 10.7554/eLife.77242. Elife. 2022. PMID: 36069777 Free PMC article.
Anionic nanoplastic exposure induces endothelial leakiness.
Wei W, Li Y, Lee M, Andrikopoulos N, Lin S, Chen C, Leong DT, Ding F, Song Y, Ke PC. Wei W, et al. Among authors: lee m, ding f, ke pc. Nat Commun. 2022 Aug 13;13(1):4757. doi: 10.1038/s41467-022-32532-5. Nat Commun. 2022. PMID: 35963861 Free PMC article.
Inhibition of Amyloid Aggregation and Toxicity with Janus Iron Oxide Nanoparticles.
Andrikopoulos N, Song Z, Wan X, Douek AM, Javed I, Fu C, Xing Y, Xin F, Li Y, Kakinen A, Koppel K, Qiao R, Whittaker AK, Kaslin J, Davis TP, Song Y, Ding F, Ke PC. Andrikopoulos N, et al. Among authors: xing y, ding f, ke pc. Chem Mater. 2021 Aug 24;33(16):6484-6500. doi: 10.1021/acs.chemmater.1c01947. Epub 2021 Aug 3. Chem Mater. 2021. PMID: 34887621 Free PMC article.
Dynamic Protein Corona of Gold Nanoparticles with an Evolving Morphology.
Nandakumar A, Wei W, Siddiqui G, Tang H, Li Y, Kakinen A, Wan X, Koppel K, Lin S, Davis TP, Leong DT, Creek DJ, Ding F, Song Y, Ke PC. Nandakumar A, et al. Among authors: tang h, ding f, ke pc. ACS Appl Mater Interfaces. 2021 Dec 8;13(48):58238-58251. doi: 10.1021/acsami.1c19824. Epub 2021 Nov 19. ACS Appl Mater Interfaces. 2021. PMID: 34797630 Free PMC article.
The membrane axis of Alzheimer's nanomedicine.
Li Y, Tang H, Andrikopoulos N, Javed I, Cecchetto L, Nandakumar A, Kakinen A, Davis TP, Ding F, Ke PC. Li Y, et al. Among authors: tang h, ding f, ke pc. Adv Nanobiomed Res. 2021 Jan;1(1):2000040. doi: 10.1002/anbr.202000040. Epub 2020 Nov 26. Adv Nanobiomed Res. 2021. PMID: 33748816 Free PMC article.
Amyloid Aggregation under the Lens of Liquid-Liquid Phase Separation.
Xing Y, Nandakumar A, Kakinen A, Sun Y, Davis TP, Ke PC, Ding F. Xing Y, et al. Among authors: ke pc, ding f, sun y. J Phys Chem Lett. 2021 Jan 14;12(1):368-378. doi: 10.1021/acs.jpclett.0c02567. Epub 2020 Dec 24. J Phys Chem Lett. 2021. PMID: 33356290 Free PMC article.
Accelerated Amyloid Beta Pathogenesis by Bacterial Amyloid FapC.
Javed I, Zhang Z, Adamcik J, Andrikopoulos N, Li Y, Otzen DE, Lin S, Mezzenga R, Davis TP, Ding F, Ke PC. Javed I, et al. Among authors: ding f, ke pc, zhang z. Adv Sci (Weinh). 2020 Jul 16;7(18):2001299. doi: 10.1002/advs.202001299. eCollection 2020 Sep. Adv Sci (Weinh). 2020. PMID: 32999841 Free PMC article.
Amyloidosis Inhibition, a New Frontier of the Protein Corona.
Chen P, Ding F, Cai R, Javed I, Yang W, Zhang Z, Li Y, Davis TP, Ke PC, Chen C. Chen P, et al. Among authors: ding f, ke pc, zhang z. Nano Today. 2020 Dec;35:100937. doi: 10.1016/j.nantod.2020.100937. Epub 2020 Jul 22. Nano Today. 2020. PMID: 32728376 Free PMC article.
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers.
Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, Krokhotin A, Magnus M, Mailhot O, Major F, Mann TH, Piątkowski P, Pluta R, Popenda M, Sarzynska J, Sun L, Szachniuk M, Tian S, Wang J, Wang J, Watkins AM, Wiedemann J, Xiao Y, Xu X, Yesselman JD, Zhang D, Zhang Y, Zhang Z, Zhao C, Zhao P, Zhou Y, Zok T, Żyła A, Ren A, Batey RT, Golden BL, Huang L, Lilley DM, Liu Y, Patel DJ, Westhof E. Miao Z, et al. Among authors: dokholyan nv, westhof e, ding f, zhang z. RNA. 2020 Aug;26(8):982-995. doi: 10.1261/rna.075341.120. Epub 2020 May 5. RNA. 2020. PMID: 32371455 Free PMC article.
Nanosilver Mitigates Biofilm Formation via FapC Amyloidosis Inhibition.
Huma ZE, Javed I, Zhang Z, Bilal H, Sun Y, Hussain SZ, Davis TP, Otzen DE, Landersdorfer CB, Ding F, Hussain I, Ke PC. Huma ZE, et al. Among authors: ding f, ke pc, zhang z, sun y. Small. 2020 May;16(21):e1906674. doi: 10.1002/smll.201906674. Epub 2020 Jan 27. Small. 2020. PMID: 31984626 Free PMC article.
Single-Molecular Heteroamyloidosis of Human Islet Amyloid Polypeptide.
Kakinen A, Xing Y, Hegoda Arachchi N, Javed I, Feng L, Faridi A, Douek AM, Sun Y, Kaslin J, Davis TP, Higgins MJ, Ding F, Ke PC. Kakinen A, et al. Among authors: xing y, ding f, ke pc, sun y. Nano Lett. 2019 Sep 11;19(9):6535-6546. doi: 10.1021/acs.nanolett.9b02771. Epub 2019 Aug 29. Nano Lett. 2019. PMID: 31455083 Free PMC article.
Mitigation of Amyloidosis with Nanomaterials.
Ke PC, Pilkington EH, Sun Y, Javed I, Kakinen A, Peng G, Ding F, Davis TP. Ke PC, et al. Among authors: ding f, sun y. Adv Mater. 2020 May;32(18):e1901690. doi: 10.1002/adma.201901690. Epub 2019 Jun 11. Adv Mater. 2020. PMID: 31183916 Free PMC article. Review.
Physical and Toxicological Profiles of Human IAPP Amyloids and Plaques.
Kakinen A, Sun Y, Javed I, Faridi A, Pilkington EH, Faridi P, Purcell AW, Zhou R, Ding F, Lin S, Chun Ke P, Davis TP. Kakinen A, et al. Among authors: ding f, sun y. Sci Bull (Beijing). 2019 Jan 15;64(1):26-35. doi: 10.1016/j.scib.2018.11.012. Epub 2018 Nov 22. Sci Bull (Beijing). 2019. PMID: 30662791 Free PMC article.
Mitigating Human IAPP Amyloidogenesis In Vivo with Chiral Silica Nanoribbons.
Faridi A, Sun Y, Okazaki Y, Peng G, Gao J, Kakinen A, Faridi P, Zhao M, Javed I, Purcell AW, Davis TP, Lin S, Oda R, Ding F, Ke PC. Faridi A, et al. Among authors: ding f, ke pc, sun y. Small. 2018 Nov;14(47):e1802825. doi: 10.1002/smll.201802825. Epub 2018 Oct 7. Small. 2018. PMID: 30369028 Free PMC article.
Profiling the Serum Protein Corona of Fibrillar Human Islet Amyloid Polypeptide.
Pilkington EH, Gustafsson OJR, Xing Y, Hernandez-Fernaud J, Zampronio C, Kakinen A, Faridi A, Ding F, Wilson P, Ke PC, Davis TP. Pilkington EH, et al. Among authors: xing y, ding f, ke pc. ACS Nano. 2018 Jun 26;12(6):6066-6078. doi: 10.1021/acsnano.8b02346. Epub 2018 May 16. ACS Nano. 2018. PMID: 29746093 Free PMC article.
Modulating protein amyloid aggregation with nanomaterials.
Wang B, Pilkington EH, Sun Y, Davis TP, Ke PC, Ding F. Wang B, et al. Among authors: ke pc, ding f, sun y. Environ Sci Nano. 2017 Sep 1;4(9):1772-1783. doi: 10.1039/C7EN00436B. Epub 2017 Jul 28. Environ Sci Nano. 2017. PMID: 29230295 Free PMC article.
Structure modeling of RNA using sparse NMR constraints.
Williams B 2nd, Zhao B, Tandon A, Ding F, Weeks KM, Zhang Q, Dokholyan NV. Williams B 2nd, et al. Among authors: dokholyan nv, ding f. Nucleic Acids Res. 2017 Dec 15;45(22):12638-12647. doi: 10.1093/nar/gkx1058. Nucleic Acids Res. 2017. PMID: 29165648 Free PMC article.
NanoEHS beyond Toxicity - Focusing on Biocorona.
Lin S, Mortimer M, Chen R, Kakinen A, Riviere JE, Davis TP, Ding F, Ke PC. Lin S, et al. Among authors: ding f, ke pc. Environ Sci Nano. 2017 Jul 1;7(4):1433-1454. doi: 10.1039/C6EN00579A. Epub 2017 Jun 1. Environ Sci Nano. 2017. PMID: 29123668 Free PMC article.
191 results