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Page 1
Lethal COVID-19 associates with RAAS-induced inflammation for multiple organ damage including mediastinal lymph nodes.
Topper MJ, Guarnieri JW, Haltom JA, Chadburn A, Cope H, Frere J, An J, Borczuk A, Sinha S, Kim J, Park J, Butler D, Meydan C, Foox J, Bram Y, Richard SA, Epsi NJ, Agan B, Chenoweth JG, Simons MP, Tribble D, Burgess T, Dalgard C, Heise MT, Moorman NJ, Baxter VK, Madden EA, Taft-Benz SA, Anderson EJ, Sanders WA, Dickmander RJ, Beigel K, Widjaja GA, Janssen KA, Lie T, Murdock DG, Angelin A, Soto Albrecht YE, Olali AZ, Cen Z, Dybas J, Priebe W, Emmett MR, Best SM, Kelsey Johnson M, Trovao NS, Clark KB, Zaksas V, Meller R, Grabham P, Schisler JC, Moraes-Vieira PM, Pollett S, Mason CE, Syrkin Wurtele E, Taylor D, Schwartz RE, Beheshti A, Wallace DC, Baylin SB. Topper MJ, et al. Among authors: trovao ns. Proc Natl Acad Sci U S A. 2024 Dec 3;121(49):e2401968121. doi: 10.1073/pnas.2401968121. Epub 2024 Nov 27. Proc Natl Acad Sci U S A. 2024. PMID: 39602262 Free PMC article.
Space radiation damage rescued by inhibition of key spaceflight associated miRNAs.
McDonald JT, Kim J, Farmerie L, Johnson ML, Trovao NS, Arif S, Siew K, Tsoy S, Bram Y, Park J, Overbey E, Ryon K, Haltom J, Singh U, Enguita FJ, Zaksas V, Guarnieri JW, Topper M, Wallace DC, Meydan C, Baylin S, Meller R, Muratani M, Porterfield DM, Kaufman B, Mori MA, Walsh SB, Sigaudo-Roussel D, Mebarek S, Bottini M, Marquette CA, Wurtele ES, Schwartz RE, Galeano D, Mason CE, Grabham P, Beheshti A. McDonald JT, et al. Among authors: trovao ns. Nat Commun. 2024 Jun 11;15(1):4825. doi: 10.1038/s41467-024-48920-y. Nat Commun. 2024. PMID: 38862542 Free PMC article.
New Vibrio cholerae sequences from Eastern and Southern Africa alter our understanding of regional cholera transmission.
Xiao S, Abade A, Boru W, Kasambara W, Mwaba J, Ongole F, Mmanywa M, Trovão NS, Chilengi R, Kwenda G, Orach CG, Chibwe I, Bwire G, Stine OC, Milstone AM, Lessler J, Azman AS, Luo W, Murt K, Sack DA, Debes AK, Wohl S. Xiao S, et al. Among authors: trovao ns. medRxiv [Preprint]. 2024 Mar 30:2024.03.28.24302717. doi: 10.1101/2024.03.28.24302717. medRxiv. 2024. PMID: 38585829 Free PMC article. Preprint.
Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation.
Parino F, Gustani-Buss E, Bedford T, Suchard MA, Trovão NS, Rambaut A, Colizza V, Poletto C, Lemey P. Parino F, et al. Among authors: trovao ns. medRxiv [Preprint]. 2024 Mar 15:2024.03.14.24303719. doi: 10.1101/2024.03.14.24303719. medRxiv. 2024. Update in: PNAS Nexus. 2024 Dec 17;4(1):pgae561. doi: 10.1093/pnasnexus/pgae561. PMID: 38559244 Free PMC article. Updated. Preprint.
Contemporary and historical human migration patterns shape hepatitis B virus diversity.
Potter BI, Thijssen M, Trovão NS, Pineda-Peña A, Reynders M, Mina T, Alvarez C, Amini-Bavil-Olyaee S, Nevens F, Maes P, Lemey P, Van Ranst M, Baele G, Pourkarim MR. Potter BI, et al. Among authors: trovao ns. Virus Evol. 2024 Feb 1;10(1):veae009. doi: 10.1093/ve/veae009. eCollection 2024. Virus Evol. 2024. PMID: 38361827 Free PMC article.
SARS-CoV-2 Orphan Gene ORF10 Contributes to More Severe COVID-19 Disease.
Haltom J, Trovao NS, Guarnieri J, Vincent P, Singh U, Tsoy S, O'Leary CA, Bram Y, Widjaja GA, Cen Z, Meller R, Baylin SB, Moss WN, Nikolau BJ, Enguita FJ, Wallace DC, Beheshti A, Schwartz R, Wurtele ES. Haltom J, et al. Among authors: trovao ns. medRxiv [Preprint]. 2023 Nov 27:2023.11.27.23298847. doi: 10.1101/2023.11.27.23298847. medRxiv. 2023. PMID: 38076862 Free PMC article. Preprint.
A comprehensive SARS-CoV-2 and COVID-19 review, Part 2: host extracellular to systemic effects of SARS-CoV-2 infection.
Narayanan SA, Jamison DA Jr, Guarnieri JW, Zaksas V, Topper M, Koutnik AP, Park J, Clark KB, Enguita FJ, Leitão AL, Das S, Moraes-Vieira PM, Galeano D, Mason CE, Trovão NS, Schwartz RE, Schisler JC, Coelho-Dos-Reis JGA, Wurtele ES, Beheshti A. Narayanan SA, et al. Among authors: trovao ns. Eur J Hum Genet. 2024 Jan;32(1):10-20. doi: 10.1038/s41431-023-01462-1. Epub 2023 Nov 8. Eur J Hum Genet. 2024. PMID: 37938797 Free PMC article. Review.
Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta.
Trovao NS, Pan V, Goel C, Gallego-García P, Liu Y, Barbara C, Borg R, Briffa M, Cilia C, Grech L, Vassallo M, Treangen TJ, Posada D, Beheshti A, Borg J, Zahra G. Trovao NS, et al. Microbiol Spectr. 2023 Dec 12;11(6):e0153923. doi: 10.1128/spectrum.01539-23. Epub 2023 Oct 6. Microbiol Spectr. 2023. PMID: 37800925 Free PMC article.
Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts.
Guarnieri JW, Dybas JM, Fazelinia H, Kim MS, Frere J, Zhang Y, Soto Albrecht Y, Murdock DG, Angelin A, Singh LN, Weiss SL, Best SM, Lott MT, Zhang S, Cope H, Zaksas V, Saravia-Butler A, Meydan C, Foox J, Mozsary C, Bram Y, Kidane Y, Priebe W, Emmett MR, Meller R, Demharter S, Stentoft-Hansen V, Salvatore M, Galeano D, Enguita FJ, Grabham P, Trovao NS, Singh U, Haltom J, Heise MT, Moorman NJ, Baxter VK, Madden EA, Taft-Benz SA, Anderson EJ, Sanders WA, Dickmander RJ, Baylin SB, Wurtele ES, Moraes-Vieira PM, Taylor D, Mason CE, Schisler JC, Schwartz RE, Beheshti A, Wallace DC. Guarnieri JW, et al. Among authors: trovao ns. Sci Transl Med. 2023 Aug 9;15(708):eabq1533. doi: 10.1126/scitranslmed.abq1533. Epub 2023 Aug 9. Sci Transl Med. 2023. PMID: 37556555 Free PMC article.
SARS-CoV-2 antibody prevalence in a pediatric cohort of unvaccinated children in Mérida, Yucatán, México.
Ayora-Talavera G, Kirstein OD, Puerta-Guardo H, Barrera-Fuentes GA, Ortegòn-Abud D, Che-Mendoza A, Parra M, Peña-Miranda F, Culquichicon C, Pavia-Ruz N, Beheshti A, Trovão NS, Granja-Pérez P, Manrique-Saide P, Vazquez-Prokopec GM, Earnest JT. Ayora-Talavera G, et al. Among authors: trovao ns. PLOS Glob Public Health. 2022 Jun 15;2(6):e0000354. doi: 10.1371/journal.pgph.0000354. eCollection 2022. PLOS Glob Public Health. 2022. PMID: 36962356 Free PMC article.
Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions.
Rich SN, Richards V, Mavian C, Rife Magalis B, Grubaugh N, Rasmussen SA, Dellicour S, Vrancken B, Carrington C, Fisk-Hoffman R, Danso-Odei D, Chacreton D, Shapiro J, Seraphin MN, Hepp C, Black A, Dennis A, Trovão NS, Vandamme AM, Rasmussen A, Lauzardo M, Dean N, Salemi M, Prosperi M. Rich SN, et al. Among authors: trovao ns. JMIR Form Res. 2023 Apr 21;7:e39409. doi: 10.2196/39409. JMIR Form Res. 2023. PMID: 36848460 Free PMC article.
Global dissemination of influenza A virus is driven by wild bird migration through arctic and subarctic zones.
Gass JD Jr, Dusek RJ, Hall JS, Hallgrimsson GT, Halldórsson HP, Vignisson SR, Ragnarsdottir SB, Jónsson JE, Krauss S, Wong SS, Wan XF, Akter S, Sreevatsan S, Trovão NS, Nutter FB, Runstadler JA, Hill NJ. Gass JD Jr, et al. Among authors: trovao ns. Mol Ecol. 2023 Jan;32(1):198-213. doi: 10.1111/mec.16738. Epub 2022 Oct 26. Mol Ecol. 2023. PMID: 36239465 Free PMC article.
Origins and Evolution of Seasonal Human Coronaviruses.
Otieno JR, Cherry JL, Spiro DJ, Nelson MI, Trovão NS. Otieno JR, et al. Among authors: trovao ns. Viruses. 2022 Jul 15;14(7):1551. doi: 10.3390/v14071551. Viruses. 2022. PMID: 35891531 Free PMC article.
SARS-CoV-2 introductions and early dynamics of the epidemic in Portugal.
Borges V, Isidro J, Trovão NS, Duarte S, Cortes-Martins H, Martiniano H, Gordo I, Leite R, Vieira L; Portuguese network for SARS-CoV-2 genomics (Consortium); Guiomar R, Gomes JP. Borges V, et al. Among authors: trovao ns. Commun Med (Lond). 2022 Jan 28;2:10. doi: 10.1038/s43856-022-00072-0. eCollection 2022. Commun Med (Lond). 2022. PMID: 35603268 Free PMC article.
Ecological divergence of wild birds drives avian influenza spillover and global spread.
Hill NJ, Bishop MA, Trovão NS, Ineson KM, Schaefer AL, Puryear WB, Zhou K, Foss AD, Clark DE, MacKenzie KG, Gass JD Jr, Borkenhagen LK, Hall JS, Runstadler JA. Hill NJ, et al. Among authors: trovao ns. PLoS Pathog. 2022 May 19;18(5):e1010062. doi: 10.1371/journal.ppat.1010062. eCollection 2022 May. PLoS Pathog. 2022. PMID: 35588106 Free PMC article.
Evolutionary history and introduction of SARS-CoV-2 Alpha VOC/B.1.1.7 in Pakistan through international travelers.
Nasir A, Bukhari AR, Trovão NS, Thielen PM, Kanji A, Mahmood SF, Ghanchi NK, Ansar Z, Merritt B, Mehoke T, Razzak SA, Syed MA, Shaikh SR, Wassan M, Aamir UB, Baele G, Rasmussen Z, Spiro D, Hasan R, Hasan Z. Nasir A, et al. Among authors: trovao ns. Virus Evol. 2022 Mar 17;8(1):veac020. doi: 10.1093/ve/veac020. eCollection 2022. Virus Evol. 2022. PMID: 35462736 Free PMC article.
Covid-19 Exposure Assessment Tool (CEAT): Easy-to-use tool to quantify exposure based on airflow, group behavior, and infection prevalence in the community.
Schimmoller BJ, Trovão NS, Isbell M, Goel C, Heck BF, Archer TC, Cardinal KD, Naik NB, Dutta S, Daniel AR, Beheshti A. Schimmoller BJ, et al. Among authors: trovao ns. medRxiv [Preprint]. 2022 Mar 16:2022.03.02.22271806. doi: 10.1101/2022.03.02.22271806. medRxiv. 2022. Update in: Sci Adv. 2022 Sep 30;8(39):eabq0593. doi: 10.1126/sciadv.abq0593. PMID: 35291295 Free PMC article. Updated. Preprint.
Epidemiology and genetic diversity of SARS-CoV-2 lineages circulating in Africa.
Okoh OS, Nii-Trebi NI, Jakkari A, Olaniran TT, Senbadejo TY, Kafintu-Kwashie AA, Dairo EO, Ganiyu TO, Akaninyene IE, Ezediuno LO, Adeosun IJ, Ockiya MA, Jimah EM, Spiro DJ, Oladipo EK, Trovão NS. Okoh OS, et al. Among authors: trovao ns. iScience. 2022 Mar 18;25(3):103880. doi: 10.1016/j.isci.2022.103880. Epub 2022 Feb 5. iScience. 2022. PMID: 35156006 Free PMC article.
Epidemiology and genetic diversity of SARS-CoV-2 lineages circulating in Africa.
Okoh OS, Nii-Trebi NI, Jakkari A, Olaniran TT, Senbadejo TY, Kafintu-Kwashie AA, Dairo EO, Ganiyu TO, Akaninyene IE, Ezediuno LO, Adeosun IJ, Ockiya MA, Jimah EM, Spiro DJ, Oladipo EK, Trovão NS. Okoh OS, et al. Among authors: trovao ns. medRxiv [Preprint]. 2021 May 19:2021.05.17.21257341. doi: 10.1101/2021.05.17.21257341. medRxiv. 2021. Update in: iScience. 2022 Mar 18;25(3):103880. doi: 10.1016/j.isci.2022.103880. PMID: 34031660 Free PMC article. Updated. Preprint.
Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level.
Salimi V, Viegas M, Trento A, Agoti CN, Anderson LJ, Avadhanula V, Bahl J, Bont L, Brister JR, Cane PA, Galiano M, Graham BS, Hatcher EL, Hellferscee O, Henke DM, Hirve S, Jackson S, Keyaerts E, Kragten-Tabatabaie L, Lindstrom S, Nauwelaers I, Nokes DJ, Openshaw PJ, Peret TC, Piedra PA, Ramaekers K, Rector A, Trovão NS, von Gottberg A, Zambon M, Zhang W, Williams TC, Barr IG, Buchholz UJ. Salimi V, et al. Among authors: trovao ns. Emerg Infect Dis. 2021 Jun;27(6):1-9. doi: 10.3201/eid2706.204608. Emerg Infect Dis. 2021. PMID: 34013862 Free PMC article.
Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore-Washington metropolitan area.
Thielen PM, Wohl S, Mehoke T, Ramakrishnan S, Kirsche M, Falade-Nwulia O, Trovão NS, Ernlund A, Howser C, Sadowski N, Morris CP, Hopkins M, Schwartz M, Fan Y, Gniazdowski V, Lessler J, Sauer L, Schatz MC, Evans JD, Ray SC, Timp W, Mostafa HH. Thielen PM, et al. Among authors: trovao ns. JCI Insight. 2021 Mar 22;6(6):e144350. doi: 10.1172/jci.insight.144350. JCI Insight. 2021. PMID: 33749660 Free PMC article.
Genomic Diversity of SARS-CoV-2 During Early Introduction into the United States National Capital Region.
Thielen PM, Wohl S, Mehoke T, Ramakrishnan S, Kirsche M, Falade-Nwulia O, Trovão NS, Ernlund A, Howser C, Sadowski N, Morris P, Hopkins M, Schwartz M, Fan Y, Gniazdowski V, Lessler J, Sauer L, Schatz MC, Evans JD, Ray SC, Timp W, Mostafa HH. Thielen PM, et al. Among authors: trovao ns. medRxiv [Preprint]. 2020 Aug 23:2020.08.13.20174136. doi: 10.1101/2020.08.13.20174136. medRxiv. 2020. Update in: JCI Insight. 2021 Mar 22;6(6):144350. doi: 10.1172/jci.insight.144350. PMID: 32817965 Free PMC article. Updated. Preprint.
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.
Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, Lam TT, Suchard MA, Abecasis A, Wilkinson E, de Oliveira T, Bento AI, Schmidt HA, Martin D, Hadfield J, Faria N, Grubaugh ND, Neher RA, Baele G, Lemey P, Stadler T, Albert J, Crandall KA, Leitner T, Stamatakis A, Prosperi M, Salemi M. Mavian C, et al. Among authors: trovao ns. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12522-12523. doi: 10.1073/pnas.2007295117. Epub 2020 May 7. Proc Natl Acad Sci U S A. 2020. PMID: 32381734 Free PMC article. No abstract available.
When Pigs Fly: Pandemic influenza enters the 21st century.
Trovão NS, Nelson MI. Trovão NS, et al. PLoS Pathog. 2020 Mar 19;16(3):e1008259. doi: 10.1371/journal.ppat.1008259. eCollection 2020 Mar. PLoS Pathog. 2020. PMID: 32191770 Free PMC article. Review. No abstract available.
Molecular epidemiology, phylogenetic analysis and genotype distribution of hepatitis B virus in Saudi Arabia: Predominance of genotype D1.
Al-Qahtani AA, Pourkarim MR, Trovão NS, Vergote V, Li G, Thijssen M, Abdo AA, Sanai FM, Dela Cruz D, Bohol MFF, Al-Anazi MR, Al-Ahdal MN. Al-Qahtani AA, et al. Among authors: trovao ns. Infect Genet Evol. 2020 Jan;77:104051. doi: 10.1016/j.meegid.2019.104051. Epub 2019 Oct 18. Infect Genet Evol. 2020. PMID: 31634640 Free article.
Evolution of rotavirus C in humans and several domestic animal species.
Trovão NS, Shepherd FK, Herzberg K, Jarvis MC, Lam HC, Rovira A, Culhane MR, Nelson MI, Marthaler DG. Trovão NS, et al. Zoonoses Public Health. 2019 Aug;66(5):546-557. doi: 10.1111/zph.12575. Epub 2019 Mar 7. Zoonoses Public Health. 2019. PMID: 30848076 Free PMC article.
Human-Origin Influenza A(H3N2) Reassortant Viruses in Swine, Southeast Mexico.
Nelson MI, Souza CK, Trovão NS, Diaz A, Mena I, Rovira A, Vincent AL, Torremorell M, Marthaler D, Culhane MR. Nelson MI, et al. Among authors: trovao ns. Emerg Infect Dis. 2019 Apr;25(4):691-700. doi: 10.3201/eid2504.180779. Epub 2019 Apr 17. Emerg Infect Dis. 2019. PMID: 30730827 Free PMC article.
The transmission dynamics and diversity of human metapneumovirus in Peru.
Pollett S, Trovão NS, Tan Y, Eden JS, Halpin RA, Bera J, Das SR, Wentworth D, Ocaña V, Mendocilla SM, Álvarez C, Calisto ME, Garcia J, Halsey E, Ampuero JS, Nelson MI, Leguia M. Pollett S, et al. Among authors: trovao ns. Influenza Other Respir Viruses. 2018 Jul;12(4):508-513. doi: 10.1111/irv.12537. Epub 2018 Mar 30. Influenza Other Respir Viruses. 2018. PMID: 29288526 Free PMC article.
Host ecology determines the dispersal patterns of a plant virus.
Trovão NS, Baele G, Vrancken B, Bielejec F, Suchard MA, Fargette D, Lemey P. Trovão NS, et al. Virus Evol. 2015 Dec 16;1(1):vev016. doi: 10.1093/ve/vev016. eCollection 2015. Virus Evol. 2015. PMID: 27774287 Free PMC article.
Origins of the 2009 H1N1 influenza pandemic in swine in Mexico.
Mena I, Nelson MI, Quezada-Monroy F, Dutta J, Cortes-Fernández R, Lara-Puente JH, Castro-Peralta F, Cunha LF, Trovão NS, Lozano-Dubernard B, Rambaut A, van Bakel H, García-Sastre A. Mena I, et al. Among authors: trovao ns. Elife. 2016 Jun 28;5:e16777. doi: 10.7554/eLife.16777. Elife. 2016. PMID: 27350259 Free PMC article.
Trends and predictors of transmitted drug resistance (TDR) and clusters with TDR in a local Belgian HIV-1 epidemic.
Pineda-Peña AC, Schrooten Y, Vinken L, Ferreira F, Li G, Trovão NS, Khouri R, Derdelinckx I, De Munter P, Kücherer C, Kostrikis LG, Nielsen C, Littsola K, Wensing A, Stanojevic M, Paredes R, Balotta C, Albert J, Boucher C, Gomez-Lopez A, Van Wijngaerden E, Van Ranst M, Vercauteren J, Vandamme AM, Van Laethem K. Pineda-Peña AC, et al. Among authors: trovao ns. PLoS One. 2014 Jul 8;9(7):e101738. doi: 10.1371/journal.pone.0101738. eCollection 2014. PLoS One. 2014. PMID: 25003369 Free PMC article.