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2022 1
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Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis.
Mitamura Y, Reiger M, Kim J, Xiao Y, Zhakparov D, Tan G, Rückert B, Rinaldi AO, Baerenfaller K, Akdis M, Brüggen MC, Nadeau KC, Brunner PM, Roqueiro D, Traidl-Hoffmann C, Akdis CA. Mitamura Y, et al. Allergy. 2023 Aug;78(8):2215-2231. doi: 10.1111/all.15781. Epub 2023 Jun 14. Allergy. 2023. PMID: 37312623
Spatial transcriptomics analysis showed the upregulation of COL6A5, COL4A1, TNC, and CCL19 in COL18A1-expressing fibroblasts in the leukocyte-infiltrated areas in AD skin. CCR7-expressing dendritic cells (DCs) showed a similar distribution in the lesions. ...Ligand-recepto …
Spatial transcriptomics analysis showed the upregulation of COL6A5, COL4A1, TNC, and CCL19 in COL18A1-expressing fibroblasts in the l …
Alterations in Alzheimer's disease microglia transcriptome might be involved in bone pathophysiology.
Gharpure M, Vyavahare S, Ahluwalia P, Gupta SK, Lee TJ, Lohakare J, Kolhe R, Lei Y, Deak F, Lu XY, Isales CM, Fulzele S. Gharpure M, et al. Neurobiol Dis. 2024 Feb;191:106404. doi: 10.1016/j.nbd.2024.106404. Epub 2024 Jan 4. Neurobiol Dis. 2024. PMID: 38184014 Free article.
Among the downregulated genes, LILRA6, MMP9, and COL18A1 are involved in bone formation and osteoclast regulation. We further validated some of these genes (CSF1, Cst7, and SPP1) in the cortex and the bone of AD mice models. ...
Among the downregulated genes, LILRA6, MMP9, and COL18A1 are involved in bone formation and osteoclast regulation. We further validat …
AZGP1 deficiency promotes angiogenesis in prostate cancer.
Wen RM, Qiu Z, Marti GEW, Peterson EE, Marques FJG, Bermudez A, Wei Y, Nolley R, Lam N, Polasko AL, Chiu CL, Zhang D, Cho S, Karageorgos GM, McDonough E, Chadwick C, Ginty F, Jung KJ, Machiraju R, Mallick P, Crowley L, Pollack JR, Zhao H, Pitteri SJ, Brooks JD. Wen RM, et al. J Transl Med. 2024 Apr 24;22(1):383. doi: 10.1186/s12967-024-05183-x. J Transl Med. 2024. PMID: 38659028 Free PMC article.
Proteomics profiling further indicated that, compared to control xenografts, AZGP1 overexpressing PC3 xenografts are enriched with angiogenesis pathway proteins, including YWHAZ, EPHA2, SERPINE1, and PDCD6, MMP9, GPX1, HSPB1, COL18A1, RNH1, and ANXA1. In vitro functional s …
Proteomics profiling further indicated that, compared to control xenografts, AZGP1 overexpressing PC3 xenografts are enriched with angiogene …
Epigenome-wide methylation and progression to high-grade cervical intraepithelial neoplasia (CIN2+): a prospective cohort study in the United States.
Bukowski A, Hoyo C, Vielot NA, Graff M, Kosorok MR, Brewster WR, Maguire RL, Murphy SK, Nedjai B, Ladoukakis E, North KE, Smith JS. Bukowski A, et al. BMC Cancer. 2023 Nov 6;23(1):1072. doi: 10.1186/s12885-023-11518-6. BMC Cancer. 2023. PMID: 37932662 Free PMC article.
The EWAS detected 336 novel progression-associated CpGs, including those located in CpG islands associated with genes FGF22, TOX, COL18A1, GPM6A, XAB2, TIMP2, GSPT1, NR4A2, and APBB1IP. CONCLUSIONS: Using prospective time-to-event data, we detected associations between CAD …
The EWAS detected 336 novel progression-associated CpGs, including those located in CpG islands associated with genes FGF22, TOX, COL18A1 …
Upregulation of collagen type X alpha 1 promotes the progress of triple-negative breast cancer via Wnt/β-catenin signaling.
Peng J, Liu X, Mao Y, Lv M, Ma T, Liu J, Zhou Q, Han Y, Li X, Wang H. Peng J, et al. Mol Carcinog. 2024 Aug;63(8):1588-1598. doi: 10.1002/mc.23747. Epub 2024 May 23. Mol Carcinog. 2024. PMID: 38780151
The research aims to explore the role and mechanism of X collagen alpha-1 chain protein (COL10A1 gene) in TNBC. UALCAN and Kaplan-Meier were used to detect the expression of COL10A1 and its role in the prognosis of breast cancer patients. ...
The research aims to explore the role and mechanism of X collagen alpha-1 chain protein (COL10A1 gene) in TNBC. …
The Microbiome, Epigenome, and Diet in Adults with Obesity during Behavioral Weight Loss.
Hill EB, Konigsberg IR, Ir D, Frank DN, Jambal P, Litkowski EM, Lange EM, Lange LA, Ostendorf DM, Scorsone JJ, Wayland L, Bing K, MacLean PS, Melanson EL, Bessesen DH, Catenacci VA, Stanislawski MA, Borengasser SJ. Hill EB, et al. Nutrients. 2023 Aug 16;15(16):3588. doi: 10.3390/nu15163588. Nutrients. 2023. PMID: 37630778 Free PMC article.
At BL, one MB taxon, Ruminiclostridium, was associated with DNAme of the genes COL20A1 (r = 0.651, p = 0.029), COL18A1 (r = 0.578, p = 0.044), and NT5E (r = 0.365, p = 0.043). At 3 m, there were 14 unique MB:DNAme associations, such as Akkermansia with DNAme of GUSB (r = - …
At BL, one MB taxon, Ruminiclostridium, was associated with DNAme of the genes COL20A1 (r = 0.651, p = 0.029), COL18A1 (r = 0.578, p …
KNO1-mediated autophagic degradation of the Bloom syndrome complex component RMI1 promotes homologous recombination.
Chen P, De Winne N, De Jaeger G, Ito M, Heese M, Schnittger A. Chen P, et al. EMBO J. 2023 May 15;42(10):e111980. doi: 10.15252/embj.2022111980. Epub 2023 Mar 27. EMBO J. 2023. PMID: 36970874 Free PMC article.
We find that the recently identified DNA damage regulator KNO1 facilitates K63-linked ubiquitination of RMI1, a structural component of the complex, thereby triggering RMI1 autophagic degradation and resulting in increased homologous recombination. Conversely, reduced auto …
We find that the recently identified DNA damage regulator KNO1 facilitates K63-linked ubiquitination of RMI1, a structural component …
Generation of an induced pluripotent stem cell line (ZSZOCi001-A) from a patient with Knobloch syndrome caused by biallelic mutations in the gene COL18A1.
Jiang Z, Sun W, Zhang Q, Wang P. Jiang Z, et al. Stem Cell Res. 2023 Aug;70:103131. doi: 10.1016/j.scr.2023.103131. Epub 2023 May 29. Stem Cell Res. 2023. PMID: 37269665 Free article.
Knobloch syndrome is an autosomal recessive disorder characterized by high myopia, retinal detachment, and occipital skull defects. Mutations in the COL18A1 gene have been identified to cause KNO1. Here, we successfully generated a human induced pluripotent stem cel …
Knobloch syndrome is an autosomal recessive disorder characterized by high myopia, retinal detachment, and occipital skull defects. Mutation …
Transcriptome research of human amniocytes identifies hub genes associated with developmental dysplasia in down syndrome.
Guo Z, Xiao H, Yang W, Li T, Hao B, Liao S. Guo Z, et al. Aging (Albany NY). 2023 Dec 12;15(23):14086-14108. doi: 10.18632/aging.205291. Epub 2023 Dec 12. Aging (Albany NY). 2023. PMID: 38095646 Free PMC article.
Furthermore, STRING protein network studies demonstrated 7 candidate HSA21 genes participated Gene Ontology (GO) terms: cell adhesion and extracellular matrix remodeling (COL6A1, COL6A2, COL18A1, ADAMTS5, JAM2, and POFUT2), inflammation and virus infection response (MX1 an …
Furthermore, STRING protein network studies demonstrated 7 candidate HSA21 genes participated Gene Ontology (GO) terms: cell adhesion and ex …
Altered extracellular matrix-related pathways accelerate the transition from normal to prefibroid myometrium in Black women.
Bariani MV, Grimm SL, Coarfa C, Velez Edwards DR, Yang Q, Walker CL, Ali M, Al-Hendy A. Bariani MV, et al. Am J Obstet Gynecol. 2024 Sep;231(3):324.e1-324.e12. doi: 10.1016/j.ajog.2024.05.048. Epub 2024 May 31. Am J Obstet Gynecol. 2024. PMID: 38825029
We found increased levels of Tenascin C, type I collagen alpha 1 chain, fibronectin, and phospho-p38 MAPK (Thr180/Tyr182, active) protein levels in at-risk over normal myometrium tissues from Black women, whereas such differences were not observed in s …
We found increased levels of Tenascin C, type I collagen alpha 1 chain, fibronectin, and phospho-p38 MAPK (Thr18 …
25 results