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Year Number of Results
2020 5
2022 1
2023 3
2024 1
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2026 0

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12 results

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Page 1
Correction: Identification of patient demographic, clinical, and SARS-CoV-2 genomic factors associated with severe COVID-19 using supervised machine learning: a retrospective multicenter study.
Nirmalarajah K, Aftanas P, Barati S, Chien E, Crowl G, Faheem A, Farooqi L, Jamal AJ, Khan S, Kotwa JD, Li AX, Mozafarihashjin M, Nasir JA, Shigayeva A, Yim W, Yip L, Zhong XZ, Katz K, Kozak R, McArthur AG, Daneman N, Maguire F, McGeer AJ, Duvvuri VR, Mubareka S. Nirmalarajah K, et al. Among authors: mcarthur ag, nasir ja. BMC Infect Dis. 2025 Oct 16;25(1):1343. doi: 10.1186/s12879-025-11828-z. BMC Infect Dis. 2025. PMID: 41102627 Free PMC article. No abstract available.
Identification of patient demographic, clinical, and SARS-CoV-2 genomic factors associated with severe COVID-19 using supervised machine learning: a retrospective multicenter study.
Nirmalarajah K, Aftanas P, Barati S, Chien E, Crowl G, Faheem A, Farooqi L, Jamal AJ, Khan S, Kotwa JD, Li AX, Mozafarihashjin M, Nasir JA, Shigayeva A, Yim W, Yip L, Zhong XZ, Katz K, Kozak R, McArthur AG, Daneman N, Maguire F, McGeer AJ, Duvvuri VR, Mubareka S. Nirmalarajah K, et al. Among authors: mcarthur ag, nasir ja. BMC Infect Dis. 2025 Jan 28;25(1):132. doi: 10.1186/s12879-025-10450-3. BMC Infect Dis. 2025. PMID: 39875869 Free PMC article.
SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes.
Nasir JA, Maguire F, Smith KM, Panousis EM, Baker SJC, Aftanas P, Raphenya AR, Alcock BP, Maan H, Knox NC, Banerjee A, Mossman K, Wang B, Simpson JT, Kozak RA, Mubareka S, McArthur AG. Nasir JA, et al. Among authors: mcarthur ag. NAR Genom Bioinform. 2024 Dec 18;6(4):lqae176. doi: 10.1093/nargab/lqae176. eCollection 2024 Dec. NAR Genom Bioinform. 2024. PMID: 39703420 Free PMC article.
Sensitivity to Neutralizing Antibodies and Resistance to Type I Interferons in SARS-CoV-2 R.1 Lineage Variants, Canada.
Jacob RA, Zhang A, Ajoge HO, D'Agostino MR, Nirmalarajah K, Shigayeva A, Demian WL, Baker SJC, Derakhshani H, Rossi L, Nasir JA, Panousis EM, Draia AN, Vermeiren C, Gilchrist J, Smieja N, Bulir D, Smieja M, Surette MG, McArthur AG, McGeer AJ, Mubareka S, Banerjee A, Miller MS, Mossman K. Jacob RA, et al. Among authors: mcarthur ag, nasir ja. Emerg Infect Dis. 2023 Jul;29(7):1386-1396. doi: 10.3201/eid2907.230198. Epub 2023 Jun 12. Emerg Infect Dis. 2023. PMID: 37308158 Free PMC article.
SARS-CoV-2 Outbreak Investigation Using Contact Tracing and Whole-Genome Sequencing in an Ontario Tertiary Care Hospital.
Tsang KK, Ahmad S, Aljarbou A, Al Salem M, Baker SJC, Panousis EM, Derakhshani H, Rossi L, Nasir JA, Bulir DC, Surette MG, Lee RS, Smaill F, Mertz D, McArthur AG, Khan S. Tsang KK, et al. Among authors: mcarthur ag, nasir ja. Microbiol Spectr. 2023 Jun 15;11(3):e0190022. doi: 10.1128/spectrum.01900-22. Epub 2023 Apr 24. Microbiol Spectr. 2023. PMID: 37093060 Free PMC article.
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.
Alcock BP, Huynh W, Chalil R, Smith KW, Raphenya AR, Wlodarski MA, Edalatmand A, Petkau A, Syed SA, Tsang KK, Baker SJC, Dave M, McCarthy MC, Mukiri KM, Nasir JA, Golbon B, Imtiaz H, Jiang X, Kaur K, Kwong M, Liang ZC, Niu KC, Shan P, Yang JYJ, Gray KL, Hoad GR, Jia B, Bhando T, Carfrae LA, Farha MA, French S, Gordzevich R, Rachwalski K, Tu MM, Bordeleau E, Dooley D, Griffiths E, Zubyk HL, Brown ED, Maguire F, Beiko RG, Hsiao WWL, Brinkman FSL, Van Domselaar G, McArthur AG. Alcock BP, et al. Among authors: mcarthur ag, nasir ja. Nucleic Acids Res. 2023 Jan 6;51(D1):D690-D699. doi: 10.1093/nar/gkac920. Nucleic Acids Res. 2023. PMID: 36263822 Free PMC article.
Surface and Air Contamination With Severe Acute Respiratory Syndrome Coronavirus 2 From Hospitalized Coronavirus Disease 2019 Patients in Toronto, Canada, March-May 2020.
Kotwa JD, Jamal AJ, Mbareche H, Yip L, Aftanas P, Barati S, Bell NG, Bryce E, Coomes E, Crowl G, Duchaine C, Faheem A, Farooqi L, Hiebert R, Katz K, Khan S, Kozak R, Li AX, Mistry HP, Mozafarihashjin M, Nasir JA, Nirmalarajah K, Panousis EM, Paterson A, Plenderleith S, Powis J, Prost K, Schryer R, Taylor M, Veillette M, Wong T, Zoe Zhong X, McArthur AG, McGeer AJ, Mubareka S. Kotwa JD, et al. Among authors: mcarthur ag, nasir ja. J Infect Dis. 2022 Mar 2;225(5):768-776. doi: 10.1093/infdis/jiab578. J Infect Dis. 2022. PMID: 34850051 Free PMC article.
Isolation, Sequence, Infectivity, and Replication Kinetics of Severe Acute Respiratory Syndrome Coronavirus 2.
Banerjee A, Nasir JA, Budylowski P, Yip L, Aftanas P, Christie N, Ghalami A, Baid K, Raphenya AR, Hirota JA, Miller MS, McGeer AJ, Ostrowski M, Kozak RA, McArthur AG, Mossman K, Mubareka S. Banerjee A, et al. Among authors: mcarthur ag, nasir ja. Emerg Infect Dis. 2020 Sep;26(9):2054-2063. doi: 10.3201/eid2609.201495. Epub 2020 Jun 19. Emerg Infect Dis. 2020. PMID: 32558639 Free PMC article.
12 results