(Yu Haiyuan AND Cornell) OR (Yu Haiyuan AND Dana-Farber) OR (Yu H AND (Gerstein M OR Vidal Marc OR Paccanaro)) - Search Results

Year	Number of Results
2001	2
2002	1
2003	6
2004	7
2005	2
2006	8
2007	4
2008	4
2009	6
2011	5
2012	4
2013	5
2014	5
2015	5
2016	7
2017	3
2018	4
2019	5
2020	13
2021	12
2022	10
2023	4
2024	6
2025	3

1

Simultaneous measurement of intrinsic promoter and enhancer potential reveals principles of functional duality and regulatory reciprocity.

Paramo MI, Leung AK, Shah SR, Zhang J, Tippens ND, Liang J, Yao L, Jin Y, Pan X, Ozer A, Lis JT, Yu H. Paramo MI, et al. Among authors: yu h. Res Sq [Preprint]. 2025 May 13:rs.3.rs-6363545. doi: 10.21203/rs.3.rs-6363545/v1. Res Sq. 2025. PMID: 40470206 Free PMC article. Preprint.

2

A multiscale functional map of somatic mutations in cancer integrating protein structure and network topology.

Zhang Y, Leung AK, Kang JJ, Sun Y, Wu G, Li L, Sun J, Cheng L, Qiu T, Zhang J, Wierbowski SD, Gupta S, Booth JG, Yu H. Zhang Y, et al. Among authors: yu h. Nat Commun. 2025 Jan 24;16(1):975. doi: 10.1038/s41467-024-54176-3. Nat Commun. 2025. PMID: 39856048 Free PMC article.

3

Loss of Kmt2c or Kmt2d primes urothelium for tumorigenesis and redistributes KMT2A-menin to bivalent promoters.

Wang N, Pachai MR, Li D, Lee CJ, Warda S, Khudoynazarova MN, Cho WH, Xie G, Shah SR, Yao L, Qian C, Wong EWP, Yan J, Tomas FV, Hu W, Kuo F, Gao SP, Luo J, Smith AE, Han M, Gao D, Ge K, Yu H, Chandarlapaty S, Iyer GV, Rosenberg JE, Solit DB, Al-Ahmadie HA, Chi P, Chen Y. Wang N, et al. Among authors: yu h. Nat Genet. 2025 Jan;57(1):165-179. doi: 10.1038/s41588-024-02015-y. Epub 2025 Jan 13. Nat Genet. 2025. PMID: 39806204 Free PMC article.

4

A structurally informed human protein-protein interactome reveals proteome-wide perturbations caused by disease mutations.

Xiong D, Qiu Y, Zhao J, Zhou Y, Lee D, Gupta S, Torres M, Lu W, Liang S, Kang JJ, Eng C, Loscalzo J, Cheng F, Yu H. Xiong D, et al. Among authors: yu h. Nat Biotechnol. 2024 Oct 24. doi: 10.1038/s41587-024-02428-4. Online ahead of print. Nat Biotechnol. 2024. PMID: 39448882

5

Phosphoribosyl modification of poly-ubiquitin chains at the Legionella-containing vacuole prohibiting autophagy adaptor recognition.

Wan M, Minelli ME, Zhao Q, Marshall S, Yu H, Smolka M, Mao Y. Wan M, et al. Among authors: yu h. Nat Commun. 2024 Aug 30;15(1):7481. doi: 10.1038/s41467-024-51273-1. Nat Commun. 2024. PMID: 39214972 Free PMC article.

6

Current and future directions in network biology.

Zitnik M, Li MM, Wells A, Glass K, Morselli Gysi D, Krishnan A, Murali TM, Radivojac P, Roy S, Baudot A, Bozdag S, Chen DZ, Cowen L, Devkota K, Gitter A, Gosline SJC, Gu P, Guzzi PH, Huang H, Jiang M, Kesimoglu ZN, Koyuturk M, Ma J, Pico AR, Pržulj N, Przytycka TM, Raphael BJ, Ritz A, Sharan R, Shen Y, Singh M, Slonim DK, Tong H, Yang XH, Yoon BJ, Yu H, Milenković T. Zitnik M, et al. Among authors: yu h. Bioinform Adv. 2024 Aug 14;4(1):vbae099. doi: 10.1093/bioadv/vbae099. eCollection 2024. Bioinform Adv. 2024. PMID: 39143982 Free PMC article.

7

Dissecting the cis-regulatory syntax of transcription initiation with deep learning.

Cochran K, Yin M, Mantripragada A, Schreiber J, Marinov GK, Shah SR, Yu H, Lis JT, Kundaje A. Cochran K, et al. Among authors: yu h. bioRxiv [Preprint]. 2024 Nov 21:2024.05.28.596138. doi: 10.1101/2024.05.28.596138. bioRxiv. 2024. PMID: 38853896 Free PMC article. Preprint.

8

Phosphoribosyl modification of poly-ubiquitin chains at the Legionella-containing vacuole prohibiting autophagy adaptor recognition.

Wan M, Minelli ME, Zhao Q, Marshall S, Yu H, Smolka M, Mao Y. Wan M, et al. Among authors: yu h. Res Sq [Preprint]. 2023 Sep 14:rs.3.rs-3266941. doi: 10.21203/rs.3.rs-3266941/v1. Res Sq. 2023. Update in: Nat Commun. 2024 Aug 30;15(1):7481. doi: 10.1038/s41467-024-51273-1. PMID: 37790579 Free PMC article. Updated. Preprint.

9

Finding Needles in the Haystack: Strategies for Uncovering Noncoding Regulatory Variants.

Chen Y, Paramo MI, Zhang Y, Yao L, Shah SR, Jin Y, Zhang J, Pan X, Yu H. Chen Y, et al. Among authors: yu h. Annu Rev Genet. 2023 Nov 27;57:201-222. doi: 10.1146/annurev-genet-030723-120717. Epub 2023 Aug 10. Annu Rev Genet. 2023. PMID: 37562413 Free article. Review.

10

In vivo versus in silico assessment of potentially pathogenic missense variants in human reproductive genes.

Ding X, Singh P, Schimenti K, Tran TN, Fragoza R, Hardy J, Orwig KE, Olszewska M, Kurpisz MK, Yatsenko AN, Conrad DF, Yu H, Schimenti JC. Ding X, et al. Among authors: yu h. Proc Natl Acad Sci U S A. 2023 Jul 25;120(30):e2219925120. doi: 10.1073/pnas.2219925120. Epub 2023 Jul 17. Proc Natl Acad Sci U S A. 2023. PMID: 37459509 Free PMC article.

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