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72 results

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Page 1
Modelling Human Gut-Microbiome Interactions in a 3D Bioelectronic Platform.
Moysidou CM, van Niekerk DC, Stoeger V, Pitsalidis C, Draper LA, Withers AM, Hughes K, McCoy R, Acharya R, Hill C, Owens RM. Moysidou CM, et al. Among authors: hill c. Small Sci. 2024 Apr 22;4(6):2300349. doi: 10.1002/smsc.202300349. eCollection 2024 Jun. Small Sci. 2024. PMID: 40212761 Free PMC article.
Vitamin biosynthesis in the gut: interplay between mammalian host and its resident microbiota.
Tarracchini C, Lordan C, Milani C, Moreira LPD, Alabedallat QM, de Moreno de LeBlanc A, Turroni F, Lugli GA, Mancabelli L, Longhi G, Brennan L, Mahony J, LeBlanc JG, Nilaweera KN, Cotter PD, van Sinderen D, Ventura M. Tarracchini C, et al. Among authors: mahony j, van sinderen d. Microbiol Mol Biol Rev. 2025 Apr 2:e0018423. doi: 10.1128/mmbr.00184-23. Online ahead of print. Microbiol Mol Biol Rev. 2025. PMID: 40172109 Review.
Genome-scale resources in the infant gut symbiont Bifidobacterium breve reveal genetic determinants of colonization and host-microbe interactions.
Shiver AL, Sun J, Culver R, Violette A, Wynter C, Nieckarz M, Mattiello SP, Sekhon PK, Bottacini F, Friess L, Carlson HK, Wong DPGH, Higginbottom S, Weglarz M, Wang W, Knapp BD, Guiberson E, Sanchez J, Huang PH, Garcia PA, Buie CR, Good BH, DeFelice B, Cava F, Scaria J, Sonnenburg JL, Van Sinderen D, Deutschbauer AM, Huang KC. Shiver AL, et al. Among authors: van sinderen d. Cell. 2025 Apr 3;188(7):2003-2021.e19. doi: 10.1016/j.cell.2025.02.010. Epub 2025 Mar 10. Cell. 2025. PMID: 40068681
Functional modulation of the human gut microbiome by bacteria vehicled by cheese.
Milani C, Longhi G, Alessandri G, Fontana F, Viglioli M, Tarracchini C, Mancabelli L, Lugli GA, Petraro S, Argentini C, Anzalone R, Viappiani A, Carli E, Vacondio F, van Sinderen D, Turroni F, Mor M, Ventura M. Milani C, et al. Among authors: van sinderen d. Appl Environ Microbiol. 2025 Mar 19;91(3):e0018025. doi: 10.1128/aem.00180-25. Epub 2025 Feb 28. Appl Environ Microbiol. 2025. PMID: 40019271 Free PMC article.
Leuconostoc lactis strain APC 3969 produces a new variant of cyclic bacteriocin leucocyclicin Q and displays potent anti-Clostridium perfringens activity.
de Farias FM, Soria MC, O'Connor PM, Huang X, Buttimer C, Kamilari E, Deliephan A, Hill D, Fursenko O, Wiese J, Draper L, Stanton C, Hill C, Ross RP. de Farias FM, et al. Among authors: hill c, ross rp. Sci Rep. 2025 Feb 21;15(1):6372. doi: 10.1038/s41598-025-89450-x. Sci Rep. 2025. PMID: 39984510 Free PMC article.
Isolation of phages infecting the zoonotic pathogen Streptococcus suis reveals novel structural and genomic characteristics.
Osei EK, O'Hea R, Cambillau C, Athalye A, Hille F, Franz CMAP, O'Doherty Á, Wilson M, Murray GGR, Weinert LA, Manzanilla EG, Mahony J, Kenny JG. Osei EK, et al. Among authors: mahony j. bioRxiv [Preprint]. 2025 Jan 7:2025.01.07.631744. doi: 10.1101/2025.01.07.631744. bioRxiv. 2025. Update in: Microbiol Res. 2025 Jul;296:128147. doi: 10.1016/j.micres.2025.128147. PMID: 39829746 Free PMC article. Updated. Preprint.
Host-microbe multi-omics and succinotype profiling have prognostic value for future relapse in patients with inflammatory bowel disease.
O'Sullivan J, Patel S, Leventhal GE, Fitzgerald RS, Laserna-Mendieta EJ, Huseyin CE, Konstantinidou N, Rutherford E, Lavelle A, Dabbagh K, DeSantis TZ, Shanahan F, Temko A, Iwai S, Claesson MJ. O'Sullivan J, et al. Among authors: lavelle a. Gut Microbes. 2025 Dec;17(1):2450207. doi: 10.1080/19490976.2025.2450207. Epub 2025 Jan 15. Gut Microbes. 2025. PMID: 39812341 Free PMC article.
The mutational landscape of Staphylococcus aureus during colonisation.
Coll F, Blane B, Bellis KL, Matuszewska M, Wonfor T, Jamrozy D, Toleman MS, Geoghegan JA, Parkhill J, Massey RC, Peacock SJ, Harrison EM. Coll F, et al. Among authors: massey rc. Nat Commun. 2025 Jan 13;16(1):302. doi: 10.1038/s41467-024-55186-x. Nat Commun. 2025. PMID: 39805814 Free PMC article.
Microbiome testing in Europe: navigating analytical, ethical and regulatory challenges.
Rodriguez J, Cordaillat-Simmons M, Badalato N, Berger B, Breton H, de Lahondès R, Deschasaux-Tanguy M, Desvignes C, D'Humières C, Kampshoff S, Lavelle A, Metwaly A, Quijada NM, Seegers JFML, Udocor A, Zwart H; Human Microbiome Action Consortium; Maguin E, Doré J, Druart C. Rodriguez J, et al. Among authors: lavelle a. Microbiome. 2024 Dec 18;12(1):258. doi: 10.1186/s40168-024-01991-x. Microbiome. 2024. PMID: 39695869 Free PMC article.
Author Correction: Examining the healthy human microbiome concept.
Joos R, Boucher K, Lavelle A, Arumugam M, Blaser MJ, Claesson MJ, Clarke G, Cotter PD, De Sordi L, Dominguez-Bello MG, Dutilh BE, Ehrlich SD, Ghosh TS, Hill C, Junot C, Lahti L, Lawley TD, Licht TR, Maguin E, Makhalanyane TP, Marchesi JR, Matthijnssens J, Raes J, Ravel J, Salonen A, Scanlan PD, Shkoporov A, Stanton C, Thiele I, Tolstoy I, Walter J, Yang B, Yutin N, Zhernakova A, Zwart H; Human Microbiome Action Consortium; Doré J, Ross RP. Joos R, et al. Among authors: scanlan pd, hill c, ross rp, lavelle a, shkoporov a. Nat Rev Microbiol. 2025 Mar;23(3):206. doi: 10.1038/s41579-024-01145-8. Nat Rev Microbiol. 2025. PMID: 39681696 No abstract available.
Endometriosis specific vaginal microbiota links to urine and serum N-glycome.
MacSharry J, Kovács Z, Xie Y, Adamczyk B, Walsh C, Reidy F, McAuliffe FM, Kilbane MT, Twomey PJ, Rudd PM, Wingfield M, Butler M, van Sinderen D, Glover L, Saldova R. MacSharry J, et al. Among authors: van sinderen d. Sci Rep. 2024 Oct 25;14(1):25372. doi: 10.1038/s41598-024-76125-2. Sci Rep. 2024. PMID: 39455640 Free PMC article.
Examining the healthy human microbiome concept.
Joos R, Boucher K, Lavelle A, Arumugam M, Blaser MJ, Claesson MJ, Clarke G, Cotter PD, De Sordi L, Dominguez-Bello MG, Dutilh BE, Ehrlich SD, Ghosh TS, Hill C, Junot C, Lahti L, Lawley TD, Licht TR, Maguin E, Makhalanyane TP, Marchesi JR, Matthijnssens J, Raes J, Ravel J, Salonen A, Scanlan PD, Shkoporov A, Stanton C, Thiele I, Tolstoy I, Walter J, Yang B, Yutin N, Zhernakova A, Zwart H; Human Microbiome Action Consortium; Doré J, Ross RP. Joos R, et al. Among authors: scanlan pd, hill c, ross rp, lavelle a, shkoporov a. Nat Rev Microbiol. 2025 Mar;23(3):192-205. doi: 10.1038/s41579-024-01107-0. Epub 2024 Oct 23. Nat Rev Microbiol. 2025. PMID: 39443812 Review.
Dietary amino acids, macronutrients, vaginal birth, and breastfeeding are associated with the vaginal microbiome in early pregnancy.
Corbett GA, Moore R, Feehily C, Killeen SL, O'Brien E, Van Sinderen D, Matthews E, O'Flaherty R, Rudd PM, Saldova R, Walsh CJ, Lawton EM, MacIntyre DA, Corcoran S, Cotter PD, McAuliffe FM. Corbett GA, et al. Among authors: van sinderen d. Microbiol Spectr. 2024 Nov 5;12(11):e0113024. doi: 10.1128/spectrum.01130-24. Epub 2024 Oct 4. Microbiol Spectr. 2024. PMID: 39365058 Free PMC article.
Phage defence loci of Streptococcus thermophilus-tip of the anti-phage iceberg?
Kelleher P, Ortiz Charneco G, Kampff Z, Diaz-Garrido N, Bottacini F, McDonnell B, Lugli GA, Ventura M, Fomenkov A, Quénée P, Kulakauskas S, de Waal P, van Peij NNME, Cambillau C, Roberts RJ, van Sinderen D, Mahony J. Kelleher P, et al. Among authors: mahony j, van sinderen d. Nucleic Acids Res. 2024 Oct 28;52(19):11853-11869. doi: 10.1093/nar/gkae814. Nucleic Acids Res. 2024. PMID: 39315705 Free PMC article.
Molecular cross-talk among human intestinal bifidobacteria as explored by a human gut model.
Rizzo SM, Alessandri G, Tarracchini C, Bianchi MG, Viappiani A, Mancabelli L, Lugli GA, Milani C, Bussolati O, van Sinderen D, Ventura M, Turroni F. Rizzo SM, et al. Among authors: van sinderen d. Front Microbiol. 2024 Sep 9;15:1435960. doi: 10.3389/fmicb.2024.1435960. eCollection 2024. Front Microbiol. 2024. PMID: 39314876 Free PMC article.
Exploring the vitamin biosynthesis landscape of the human gut microbiota.
Tarracchini C, Lugli GA, Mancabelli L, van Sinderen D, Turroni F, Ventura M, Milani C. Tarracchini C, et al. Among authors: van sinderen d. mSystems. 2024 Oct 22;9(10):e0092924. doi: 10.1128/msystems.00929-24. Epub 2024 Sep 17. mSystems. 2024. PMID: 39287373 Free PMC article.
Raffinocyclicin is a novel plasmid-encoded circular bacteriocin produced by Lactococcus raffinolactis with broad-spectrum activity against many gram-positive food pathogens.
Miceli de Farias F, O'Connor PM, Buttimer C, Kamilari E, Soria MC, Johnson CN, Deliephan A, Hill D, Fursenko O, Wiese J, Draper LA, Stanton C, Hill C, Ross RP. Miceli de Farias F, et al. Among authors: hill c, ross rp. Appl Environ Microbiol. 2024 Sep 18;90(9):e0080924. doi: 10.1128/aem.00809-24. Epub 2024 Aug 27. Appl Environ Microbiol. 2024. PMID: 39189737 Free PMC article.
Functional and practical insights into three lactococcal antiphage systems.
Grafakou A, Mosterd C, de Waal PP, van Rijswijck IMH, van Peij NNME, Mahony J, van Sinderen D. Grafakou A, et al. Among authors: mahony j, van sinderen d. Appl Environ Microbiol. 2024 Sep 18;90(9):e0112024. doi: 10.1128/aem.01120-24. Epub 2024 Aug 13. Appl Environ Microbiol. 2024. PMID: 39136492 Free PMC article.
Discovery of antiphage systems in the lactococcal plasmidome.
Grafakou A, Mosterd C, Beck MH, Kelleher P, McDonnell B, de Waal PP, van Rijswijck IMH, van Peij NNME, Cambillau C, Mahony J, van Sinderen D. Grafakou A, et al. Among authors: mahony j, van sinderen d. Nucleic Acids Res. 2024 Sep 9;52(16):9760-9776. doi: 10.1093/nar/gkae671. Nucleic Acids Res. 2024. PMID: 39119896 Free PMC article.
Isolation and characterization of Septuagintavirus; a novel clade of Escherichia coli phages within the subfamily Vequintavirinae.
Cortés-Martín A, Buttimer C, Pozhydaieva N, Hille F, Shareefdeen H, Bolocan AS, Draper LA, Shkoporov AN, Franz CMAP, Höfer K, Ross RP, Hill C. Cortés-Martín A, et al. Among authors: hill c, ross rp, shkoporov an. Microbiol Spectr. 2024 Sep 3;12(9):e0059224. doi: 10.1128/spectrum.00592-24. Epub 2024 Aug 5. Microbiol Spectr. 2024. PMID: 39101714 Free PMC article.
The Marine Fish Gut Microbiome as a Source of Novel Bacteriocins.
Uniacke-Lowe S, Stanton C, Hill C, Ross RP. Uniacke-Lowe S, et al. Among authors: hill c, ross rp. Microorganisms. 2024 Jul 1;12(7):1346. doi: 10.3390/microorganisms12071346. Microorganisms. 2024. PMID: 39065114 Free PMC article. Review.
Social fear extinction susceptibility is associated with Microbiota-Gut-Brain axis alterations.
Ritz NL, Bastiaanssen TFS, Cowan CSM, Smith L, Theune N, Brocka M, Myers EM, Moloney RD, Moloney GM, Shkoporov AN, Draper LA, Hill C, Dinan TG, Slattery DA, Cryan JF. Ritz NL, et al. Among authors: hill c, shkoporov an. Brain Behav Immun. 2024 Aug;120:315-326. doi: 10.1016/j.bbi.2024.06.009. Epub 2024 Jun 8. Brain Behav Immun. 2024. PMID: 38852762 Free article.
Airway and Systemic Immunoglobulin Profiling and Immune Response in Adult Asthma.
Walsh LJ, Sullivan A, Ward C, Hunt EB, Lapthorne S, Eustace JA, Fanning LJ, Plant BJ, O'Byrne PM, MacSharry JA, Murphy DM. Walsh LJ, et al. Among authors: plant bj. Lung. 2024 Jun;202(3):281-289. doi: 10.1007/s00408-024-00699-x. Epub 2024 May 7. Lung. 2024. PMID: 38713421 Free PMC article.