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42 results

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Page 1
Connecting chemical structure to single cell signaling profiles.
Thirman HL, Grider-Hayes MJ, Geben LC, Ihrie RA, Brown LE, Porco JA Jr, Irish JM. Thirman HL, et al. Among authors: irish jm. Commun Biol. 2025 Jul 31;8(1):1137. doi: 10.1038/s42003-025-08545-3. Commun Biol. 2025. PMID: 40745386 Free PMC article.
Multiplexed cytometry for single cell chemical biology.
Schares HAM, Hayes MJ, Balsamo JA, Thirman HL, Bachmann BO, Irish JM. Schares HAM, et al. Among authors: irish jm. Methods Cell Biol. 2025;195:143-172. doi: 10.1016/bs.mcb.2023.03.007. Epub 2023 Jul 14. Methods Cell Biol. 2025. PMID: 40180452 Free PMC article.
IL-8 Instructs Macrophage Identity in Lateral Ventricle Contacting Glioblastoma.
Medina S, Brockman AA, Cross CE, Hayes MJ, Mobley BC, Mistry AM, Chotai S, Weaver KD, Thompson RC, Chambless LB, Ihrie RA, Irish JM. Medina S, et al. Among authors: irish jm. bioRxiv [Preprint]. 2024 Mar 30:2024.03.29.587030. doi: 10.1101/2024.03.29.587030. bioRxiv. 2024. PMID: 38585888 Free PMC article. Preprint.
Learning cell identity in immunology, neuroscience, and cancer.
Medina S, Ihrie RA, Irish JM. Medina S, et al. Among authors: irish jm. Semin Immunopathol. 2023 Jan;45(1):3-16. doi: 10.1007/s00281-022-00976-y. Epub 2022 Dec 19. Semin Immunopathol. 2023. PMID: 36534139 Free PMC article. Review.
Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine.
Kramer KJ, Wilfong EM, Voss K, Barone SM, Shiakolas AR, Raju N, Roe CE, Suryadevara N, Walker LM, Wall SC, Paulo A, Schaefer S, Dahunsi D, Westlake CS, Crowe JE Jr, Carnahan RH, Rathmell JC, Bonami RH, Georgiev IS, Irish JM. Kramer KJ, et al. Among authors: irish jm. Nat Commun. 2022 Jun 16;13(1):3466. doi: 10.1038/s41467-022-31142-5. Nat Commun. 2022. PMID: 35710908 Free PMC article.
Unsupervised machine learning reveals risk stratifying glioblastoma tumor cells.
Leelatian N, Sinnaeve J, Mistry AM, Barone SM, Brockman AA, Diggins KE, Greenplate AR, Weaver KD, Thompson RC, Chambless LB, Mobley BC, Ihrie RA, Irish JM. Leelatian N, et al. Among authors: irish jm. Elife. 2020 Jun 23;9:e56879. doi: 10.7554/eLife.56879. Elife. 2020. PMID: 32573435 Free PMC article.
Computational Immune Monitoring Reveals Abnormal Double-Negative T Cells Present across Human Tumor Types.
Greenplate AR, McClanahan DD, Oberholtzer BK, Doxie DB, Roe CE, Diggins KE, Leelatian N, Rasmussen ML, Kelley MC, Gama V, Siska PJ, Rathmell JC, Ferrell PB, Johnson DB, Irish JM. Greenplate AR, et al. Among authors: irish jm. Cancer Immunol Res. 2019 Jan;7(1):86-99. doi: 10.1158/2326-6066.CIR-17-0692. Epub 2018 Nov 9. Cancer Immunol Res. 2019. PMID: 30413431 Free PMC article.
Machine learning reveals chronic graft-versus-host disease phenotypes and stratifies survival after stem cell transplant for hematologic malignancies.
Gandelman JS, Byrne MT, Mistry AM, Polikowsky HG, Diggins KE, Chen H, Lee SJ, Arora M, Cutler C, Flowers M, Pidala J, Irish JM, Jagasia MH. Gandelman JS, et al. Among authors: irish jm. Haematologica. 2019 Jan;104(1):189-196. doi: 10.3324/haematol.2018.193441. Epub 2018 Sep 20. Haematologica. 2019. PMID: 30237265 Free PMC article.
Characterizing cell subsets using marker enrichment modeling.
Diggins KE, Greenplate AR, Leelatian N, Wogsland CE, Irish JM. Diggins KE, et al. Among authors: irish jm. Nat Methods. 2017 Mar;14(3):275-278. doi: 10.1038/nmeth.4149. Epub 2017 Jan 30. Nat Methods. 2017. PMID: 28135256 Free PMC article.
Single cell analysis of human tissues and solid tumors with mass cytometry.
Leelatian N, Doxie DB, Greenplate AR, Mobley BC, Lehman JM, Sinnaeve J, Kauffmann RM, Werkhaven JA, Mistry AM, Weaver KD, Thompson RC, Massion PP, Hooks MA, Kelley MC, Chambless LB, Ihrie RA, Irish JM. Leelatian N, et al. Among authors: irish jm. Cytometry B Clin Cytom. 2017 Jan;92(1):68-78. doi: 10.1002/cyto.b.21481. Epub 2016 Oct 4. Cytometry B Clin Cytom. 2017. PMID: 27598832 Free PMC article.
Systems immune monitoring in cancer therapy.
Greenplate AR, Johnson DB, Ferrell PB Jr, Irish JM. Greenplate AR, et al. Among authors: irish jm. Eur J Cancer. 2016 Jul;61:77-84. doi: 10.1016/j.ejca.2016.03.085. Epub 2016 May 4. Eur J Cancer. 2016. PMID: 27155446 Free PMC article. Review.
High-dimensional single-cell cancer biology.
Irish JM, Doxie DB. Irish JM, et al. Curr Top Microbiol Immunol. 2014;377:1-21. doi: 10.1007/82_2014_367. Curr Top Microbiol Immunol. 2014. PMID: 24671264 Free PMC article. Review.