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Year Number of Results
2005 1
2006 2
2007 8
2008 2
2009 4
2010 6
2011 7
2012 6
2013 8
2014 12
2015 15
2016 16
2017 10
2018 9
2019 6
2020 7
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102 results
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Page 1
Considering genomic scans for selection as coalescent model choice.
Harris RB, Jensen JD. Harris RB, et al. Among authors: Jensen JD. Genome Biol Evol. 2020 May 12:evaa093. doi: 10.1093/gbe/evaa093. Online ahead of print. Genome Biol Evol. 2020. PMID: 32396636 Free article.
A consideration of within-host human cytomegalovirus genetic variation.
Jensen JD, Kowalik TF. Jensen JD, et al. Proc Natl Acad Sci U S A. 2020 Jan 14;117(2):816-817. doi: 10.1073/pnas.1915295117. Epub 2019 Dec 24. Proc Natl Acad Sci U S A. 2020. PMID: 31874930 No abstract available.
The population genetics of crypsis in vertebrates: recent insights from mice, hares, and lizards.
Harris RB, Irwin K, Jones MR, Laurent S, Barrett RDH, Nachman MW, Good JM, Linnen CR, Jensen JD, Pfeifer SP. Harris RB, et al. Among authors: Irwin K, Jensen JD. Heredity (Edinb). 2020 Jan;124(1):1-14. doi: 10.1038/s41437-019-0257-4. Epub 2019 Aug 9. Heredity (Edinb). 2020. PMID: 31399719 Free PMC article. Review.
Linking a mutation to survival in wild mice.
Barrett RDH, Laurent S, Mallarino R, Pfeifer SP, Xu CCY, Foll M, Wakamatsu K, Duke-Cohan JS, Jensen JD, Hoekstra HE. Barrett RDH, et al. Among authors: Jensen JD. Science. 2019 Feb 1;363(6426):499-504. doi: 10.1126/science.aav3824. Epub 2019 Jan 31. Science. 2019. PMID: 30705186
Mutations in Influenza A Virus Neuraminidase and Hemagglutinin Confer Resistance against a Broadly Neutralizing Hemagglutinin Stem Antibody.
Prachanronarong KL, Canale AS, Liu P, Somasundaran M, Hou S, Poh YP, Han T, Zhu Q, Renzette N, Zeldovich KB, Kowalik TF, Kurt-Yilmaz N, Jensen JD, Bolon DNA, Marasco WA, Finberg RW, Schiffer CA, Wang JP. Prachanronarong KL, et al. Among authors: Jensen JD. J Virol. 2019 Jan 4;93(2):e01639-18. doi: 10.1128/JVI.01639-18. Print 2019 Jan 15. J Virol. 2019. PMID: 30381484 Free PMC article.
The Demographic History of African Drosophila melanogaster.
Kapopoulou A, Pfeifer SP, Jensen JD, Laurent S. Kapopoulou A, et al. Among authors: Jensen JD. Genome Biol Evol. 2018 Sep 1;10(9):2338-2342. doi: 10.1093/gbe/evy185. Genome Biol Evol. 2018. PMID: 30169784 Free PMC article.
The fitness landscape of the codon space across environments.
Fragata I, Matuszewski S, Schmitz MA, Bataillon T, Jensen JD, Bank C. Fragata I, et al. Among authors: Jensen JD. Heredity (Edinb). 2018 Nov;121(5):422-437. doi: 10.1038/s41437-018-0125-7. Epub 2018 Aug 20. Heredity (Edinb). 2018. PMID: 30127529 Free PMC article.
Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares.
Jones MR, Mills LS, Alves PC, Callahan CM, Alves JM, Lafferty DJR, Jiggins FM, Jensen JD, Melo-Ferreira J, Good JM. Jones MR, et al. Among authors: Jensen JD. Science. 2018 Jun 22;360(6395):1355-1358. doi: 10.1126/science.aar5273. Science. 2018. PMID: 29930138
Synonymous Mutations at the Beginning of the Influenza A Virus Hemagglutinin Gene Impact Experimental Fitness.
Canale AS, Venev SV, Whitfield TW, Caffrey DR, Marasco WA, Schiffer CA, Kowalik TF, Jensen JD, Finberg RW, Zeldovich KB, Wang JP, Bolon DNA. Canale AS, et al. Among authors: Jensen JD. J Mol Biol. 2018 Apr 13;430(8):1098-1115. doi: 10.1016/j.jmb.2018.02.009. Epub 2018 Feb 18. J Mol Biol. 2018. PMID: 29466705
Structural Determination of the Broadly Reactive Anti-IGHV1-69 Anti-idiotypic Antibody G6 and Its Idiotope.
Avnir Y, Prachanronarong KL, Zhang Z, Hou S, Peterson EC, Sui J, Zayed H, Kurella VB, McGuire AT, Stamatatos L, Hilbert BJ, Bohn MF, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Goodall M, Jefferis R, Zhu Q, Kurt Yilmaz N, Schiffer CA, Marasco WA. Avnir Y, et al. Among authors: Jensen JD. Cell Rep. 2017 Dec 12;21(11):3243-3255. doi: 10.1016/j.celrep.2017.11.056. Cell Rep. 2017. PMID: 29241550 Free PMC article.
CRISPR-Cas9-mediated saturated mutagenesis screen predicts clinical drug resistance with improved accuracy.
Ma L, Boucher JI, Paulsen J, Matuszewski S, Eide CA, Ou J, Eickelberg G, Press RD, Zhu LJ, Druker BJ, Branford S, Wolfe SA, Jensen JD, Schiffer CA, Green MR, Bolon DN. Ma L, et al. Among authors: Jensen JD. Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11751-11756. doi: 10.1073/pnas.1708268114. Epub 2017 Oct 16. Proc Natl Acad Sci U S A. 2017. PMID: 29078326 Free PMC article.
Loci associated with skin pigmentation identified in African populations.
Crawford NG, Kelly DE, Hansen MEB, Beltrame MH, Fan S, Bowman SL, Jewett E, Ranciaro A, Thompson S, Lo Y, Pfeifer SP, Jensen JD, Campbell MC, Beggs W, Hormozdiari F, Mpoloka SW, Mokone GG, Nyambo T, Meskel DW, Belay G, Haut J; NISC Comparative Sequencing Program, Rothschild H, Zon L, Zhou Y, Kovacs MA, Xu M, Zhang T, Bishop K, Sinclair J, Rivas C, Elliot E, Choi J, Li SA, Hicks B, Burgess S, Abnet C, Watkins-Chow DE, Oceana E, Song YS, Eskin E, Brown KM, Marks MS, Loftus SK, Pavan WJ, Yeager M, Chanock S, Tishkoff SA. Crawford NG, et al. Among authors: Jensen JD. Science. 2017 Nov 17;358(6365):eaan8433. doi: 10.1126/science.aan8433. Epub 2017 Oct 12. Science. 2017. PMID: 29025994 Free PMC article.
The Combined Effect of Oseltamivir and Favipiravir on Influenza A Virus Evolution.
Ormond L, Liu P, Matuszewski S, Renzette N, Bank C, Zeldovich K, Bolon DN, Kowalik TF, Finberg RW, Jensen JD, Wang JP. Ormond L, et al. Among authors: Jensen JD. Genome Biol Evol. 2017 Jul 1;9(7):1913-1924. doi: 10.1093/gbe/evx138. Genome Biol Evol. 2017. PMID: 28854600 Free PMC article.
Antiviral drug resistance as an adaptive process.
Irwin KK, Renzette N, Kowalik TF, Jensen JD. Irwin KK, et al. Among authors: Jensen JD. Virus Evol. 2016 Jun 10;2(1):vew014. doi: 10.1093/ve/vew014. eCollection 2016 Jan. Virus Evol. 2016. PMID: 28694997 Free PMC article. Review.
Molecular Basis for Differential Patterns of Drug Resistance in Influenza N1 and N2 Neuraminidase.
Prachanronarong KL, Özen A, Thayer KM, Yilmaz LS, Zeldovich KB, Bolon DN, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Kurt-Yilmaz N, Schiffer CA. Prachanronarong KL, et al. Among authors: Jensen JD. J Chem Theory Comput. 2016 Dec 13;12(12):6098-6108. doi: 10.1021/acs.jctc.6b00703. Epub 2016 Nov 17. J Chem Theory Comput. 2016. PMID: 27951676
On the (un)predictability of a large intragenic fitness landscape.
Bank C, Matuszewski S, Hietpas RT, Jensen JD. Bank C, et al. Among authors: Jensen JD. Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):14085-14090. doi: 10.1073/pnas.1612676113. Epub 2016 Nov 18. Proc Natl Acad Sci U S A. 2016. PMID: 27864516 Free PMC article.
The Impact of Linked Selection in Chimpanzees: A Comparative Study.
Pfeifer SP, Jensen JD. Pfeifer SP, et al. Among authors: Jensen JD. Genome Biol Evol. 2016 Oct 30;8(10):3202-3208. doi: 10.1093/gbe/evw240. Genome Biol Evol. 2016. PMID: 27678122 Free PMC article.
A Statistical Guide to the Design of Deep Mutational Scanning Experiments.
Matuszewski S, Hildebrandt ME, Ghenu AH, Jensen JD, Bank C. Matuszewski S, et al. Among authors: Jensen JD. Genetics. 2016 Sep;204(1):77-87. doi: 10.1534/genetics.116.190462. Epub 2016 Jul 13. Genetics. 2016. PMID: 27412710 Free PMC article.
The past, present and future of genomic scans for selection.
Jensen JD, Foll M, Bernatchez L. Jensen JD, et al. Mol Ecol. 2016 Jan;25(1):1-4. doi: 10.1111/mec.13493. Mol Ecol. 2016. PMID: 26745554 No abstract available.
A Balance between Inhibitor Binding and Substrate Processing Confers Influenza Drug Resistance.
Jiang L, Liu P, Bank C, Renzette N, Prachanronarong K, Yilmaz LS, Caffrey DR, Zeldovich KB, Schiffer CA, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Bolon DNA. Jiang L, et al. Among authors: Jensen JD. J Mol Biol. 2016 Feb 13;428(3):538-553. doi: 10.1016/j.jmb.2015.11.027. Epub 2015 Dec 4. J Mol Biol. 2016. PMID: 26656922
Inferring the age of a fixed beneficial allele.
Ormond L, Foll M, Ewing GB, Pfeifer SP, Jensen JD. Ormond L, et al. Among authors: Jensen JD. Mol Ecol. 2016 Jan;25(1):157-69. doi: 10.1111/mec.13478. Epub 2015 Dec 24. Mol Ecol. 2016. PMID: 26576754
Limits and patterns of cytomegalovirus genomic diversity in humans.
Renzette N, Pokalyuk C, Gibson L, Bhattacharjee B, Schleiss MR, Hamprecht K, Yamamoto AY, Mussi-Pinhata MM, Britt WJ, Jensen JD, Kowalik TF. Renzette N, et al. Among authors: Jensen JD. Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):E4120-8. doi: 10.1073/pnas.1501880112. Epub 2015 Jul 6. Proc Natl Acad Sci U S A. 2015. PMID: 26150505 Free PMC article.
PopPlanner: visually constructing demographic models for simulation.
Ewing GB, Reiff PA, Jensen JD. Ewing GB, et al. Among authors: Jensen JD. Front Genet. 2015 Apr 23;6:150. doi: 10.3389/fgene.2015.00150. eCollection 2015. Front Genet. 2015. PMID: 25954301 Free PMC article.
Positive Selection Drives Preferred Segment Combinations during Influenza Virus Reassortment.
Zeldovich KB, Liu P, Renzette N, Foll M, Pham ST, Venev SV, Gallagher GR, Bolon DN, Kurt-Jones EA, Jensen JD, Caffrey DR, Schiffer CA, Kowalik TF, Wang JP, Finberg RW. Zeldovich KB, et al. Among authors: Jensen JD. Mol Biol Evol. 2015 Jun;32(6):1519-32. doi: 10.1093/molbev/msv044. Epub 2015 Feb 23. Mol Biol Evol. 2015. PMID: 25713211 Free PMC article.
Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil.
Malaspinas AS, Lao O, Schroeder H, Rasmussen M, Raghavan M, Moltke I, Campos PF, Sagredo FS, Rasmussen S, Gonçalves VF, Albrechtsen A, Allentoft ME, Johnson PL, Li M, Reis S, Bernardo DV, DeGiorgio M, Duggan AT, Bastos M, Wang Y, Stenderup J, Moreno-Mayar JV, Brunak S, Sicheritz-Ponten T, Hodges E, Hannon GJ, Orlando L, Price TD, Jensen JD, Nielsen R, Heinemeier J, Olsen J, Rodrigues-Carvalho C, Lahr MM, Neves WA, Kayser M, Higham T, Stoneking M, Pena SD, Willerslev E. Malaspinas AS, et al. Among authors: Jensen JD. Curr Biol. 2014 Nov 3;24(21):R1035-7. doi: 10.1016/j.cub.2014.09.078. Epub 2014 Oct 23. Curr Biol. 2014. PMID: 25455029 Free PMC article.
A systematic survey of an intragenic epistatic landscape.
Bank C, Hietpas RT, Jensen JD, Bolon DN. Bank C, et al. Among authors: Jensen JD. Mol Biol Evol. 2015 Jan;32(1):229-38. doi: 10.1093/molbev/msu301. Epub 2014 Nov 3. Mol Biol Evol. 2015. PMID: 25371431 Free PMC article.
Influenza virus drug resistance: a time-sampled population genetics perspective.
Foll M, Poh YP, Renzette N, Ferrer-Admetlla A, Bank C, Shim H, Malaspinas AS, Ewing G, Liu P, Wegmann D, Caffrey DR, Zeldovich KB, Bolon DN, Wang JP, Kowalik TF, Schiffer CA, Finberg RW, Jensen JD. Foll M, et al. Among authors: Jensen JD. PLoS Genet. 2014 Feb 27;10(2):e1004185. doi: 10.1371/journal.pgen.1004185. eCollection 2014 Feb. PLoS Genet. 2014. PMID: 24586206 Free PMC article.
Distinguishing neutral from deleterious mutations in growing populations.
Ewing GB, Jensen JD. Ewing GB, et al. Among authors: Jensen JD. Front Genet. 2014 Jan 31;5:7. doi: 10.3389/fgene.2014.00007. eCollection 2014. Front Genet. 2014. PMID: 24550931 Free PMC article. No abstract available.
Shifting fitness landscapes in response to altered environments.
Hietpas RT, Bank C, Jensen JD, Bolon DNA. Hietpas RT, et al. Among authors: Jensen JD. Evolution. 2013 Dec;67(12):3512-22. doi: 10.1111/evo.12207. Epub 2013 Aug 2. Evolution. 2013. PMID: 24299404 Free PMC article.
The impact of equilibrium assumptions on tests of selection.
Crisci JL, Poh YP, Mahajan S, Jensen JD. Crisci JL, et al. Among authors: Jensen JD. Front Genet. 2013 Nov 11;4:235. doi: 10.3389/fgene.2013.00235. eCollection 2013. Front Genet. 2013. PMID: 24273554 Free PMC article.
Evolution of the influenza A virus genome during development of oseltamivir resistance in vitro.
Renzette N, Caffrey DR, Zeldovich KB, Liu P, Gallagher GR, Aiello D, Porter AJ, Kurt-Jones EA, Bolon DN, Poh YP, Jensen JD, Schiffer CA, Kowalik TF, Finberg RW, Wang JP. Renzette N, et al. Among authors: Jensen JD. J Virol. 2014 Jan;88(1):272-81. doi: 10.1128/JVI.01067-13. Epub 2013 Oct 23. J Virol. 2014. PMID: 24155392 Free PMC article.
Recurrent and recent selective sweeps in the piRNA pathway.
Simkin A, Wong A, Poh YP, Theurkauf WE, Jensen JD. Simkin A, et al. Among authors: Jensen JD. Evolution. 2013 Apr;67(4):1081-90. doi: 10.1111/evo.12011. Epub 2013 Jan 17. Evolution. 2013. PMID: 23550757 Free PMC article.
Adaptive evolution of multiple traits through multiple mutations at a single gene.
Linnen CR, Poh YP, Peterson BK, Barrett RD, Larson JG, Jensen JD, Hoekstra HE. Linnen CR, et al. Among authors: Jensen JD. Science. 2013 Mar 15;339(6125):1312-6. doi: 10.1126/science.1233213. Science. 2013. PMID: 23493712 Free PMC article.
Genomic variation and its impact on gene expression in Drosophila melanogaster.
Massouras A, Waszak SM, Albarca-Aguilera M, Hens K, Holcombe W, Ayroles JF, Dermitzakis ET, Stone EA, Jensen JD, Mackay TF, Deplancke B. Massouras A, et al. Among authors: Jensen JD. PLoS Genet. 2012;8(11):e1003055. doi: 10.1371/journal.pgen.1003055. Epub 2012 Nov 15. PLoS Genet. 2012. PMID: 23189034 Free PMC article.
Human-specific histone methylation signatures at transcription start sites in prefrontal neurons.
Shulha HP, Crisci JL, Reshetov D, Tushir JS, Cheung I, Bharadwaj R, Chou HJ, Houston IB, Peter CJ, Mitchell AC, Yao WD, Myers RH, Chen JF, Preuss TM, Rogaev EI, Jensen JD, Weng Z, Akbarian S. Shulha HP, et al. Among authors: Jensen JD. PLoS Biol. 2012;10(11):e1001427. doi: 10.1371/journal.pbio.1001427. Epub 2012 Nov 20. PLoS Biol. 2012. PMID: 23185133 Free PMC article.
Evidence of adaptation from ancestral variation in young populations of beach mice.
Domingues VS, Poh YP, Peterson BK, Pennings PS, Jensen JD, Hoekstra HE. Domingues VS, et al. Among authors: Jensen JD. Evolution. 2012 Oct;66(10):3209-23. doi: 10.1111/j.1558-5646.2012.01669.x. Epub 2012 May 4. Evolution. 2012. PMID: 23025610
On detecting selective sweeps using single genomes.
Sinha P, Dincer A, Virgil D, Xu G, Poh YP, Jensen JD. Sinha P, et al. Among authors: Jensen JD. Front Genet. 2011 Dec 1;2:85. doi: 10.3389/fgene.2011.00085. eCollection 2011. Front Genet. 2011. PMID: 22303379 Free PMC article.
Recent progress in polymorphism-based population genetic inference.
Crisci JL, Poh YP, Bean A, Simkin A, Jensen JD. Crisci JL, et al. Among authors: Jensen JD. J Hered. 2012 Mar-Apr;103(2):287-96. doi: 10.1093/jhered/esr128. Epub 2012 Jan 12. J Hered. 2012. PMID: 22246406 Review.
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes.
Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, Li Y, Yu C, Kristiansen K, Zhang X, Wang J, Wright M, McCouch S, Nielsen R, Wang J, Wang W. Xu X, et al. Among authors: Jensen JD. Nat Biotechnol. 2011 Dec 11;30(1):105-11. doi: 10.1038/nbt.2050. Nat Biotechnol. 2011. PMID: 22158310
On characterizing adaptive events unique to modern humans.
Crisci JL, Wong A, Good JM, Jensen JD. Crisci JL, et al. Among authors: Jensen JD. Genome Biol Evol. 2011;3:791-8. doi: 10.1093/gbe/evr075. Epub 2011 Jul 29. Genome Biol Evol. 2011. PMID: 21803765 Free PMC article.
Experimental illumination of a fitness landscape.
Hietpas RT, Jensen JD, Bolon DN. Hietpas RT, et al. Among authors: Jensen JD. Proc Natl Acad Sci U S A. 2011 May 10;108(19):7896-901. doi: 10.1073/pnas.1016024108. Epub 2011 Apr 4. Proc Natl Acad Sci U S A. 2011. PMID: 21464309 Free PMC article.
Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection.
Albert FW, Hodges E, Jensen JD, Besnier F, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Good JM, Green RE, Burbano HA, Plyusnina IZ, Trut L, Andersson L, Schöneberg T, Carlborg O, Hannon GJ, Pääbo S. Albert FW, et al. Among authors: Jensen JD. Heredity (Edinb). 2011 Sep;107(3):205-14. doi: 10.1038/hdy.2011.4. Epub 2011 Feb 9. Heredity (Edinb). 2011. PMID: 21304545 Free PMC article.
To pool, or not to pool?
Cutler DJ, Jensen JD. Cutler DJ, et al. Among authors: Jensen JD. Genetics. 2010 Sep;186(1):41-3. doi: 10.1534/genetics.110.121012. Genetics. 2010. PMID: 20855575 Free PMC article. No abstract available.
A draft sequence of the Neandertal genome.
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, Alkan C, Prüfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Pääbo S. Green RE, et al. Among authors: Jensen JD. Science. 2010 May 7;328(5979):710-722. doi: 10.1126/science.1188021. Science. 2010. PMID: 20448178 Free PMC article.
Population genetic inference from genomic sequence variation.
Pool JE, Hellmann I, Jensen JD, Nielsen R. Pool JE, et al. Among authors: Jensen JD. Genome Res. 2010 Mar;20(3):291-300. doi: 10.1101/gr.079509.108. Epub 2010 Jan 12. Genome Res. 2010. PMID: 20067940 Free PMC article. Review.
On the origin and spread of an adaptive allele in deer mice.
Linnen CR, Kingsley EP, Jensen JD, Hoekstra HE. Linnen CR, et al. Among authors: Jensen JD. Science. 2009 Aug 28;325(5944):1095-8. doi: 10.1126/science.1175826. Science. 2009. PMID: 19713521 Free PMC article.
Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).
Xia Q, Guo Y, Zhang Z, Li D, Xuan Z, Li Z, Dai F, Li Y, Cheng D, Li R, Cheng T, Jiang T, Becquet C, Xu X, Liu C, Zha X, Fan W, Lin Y, Shen Y, Jiang L, Jensen J, Hellmann I, Tang S, Zhao P, Xu H, Yu C, Zhang G, Li J, Cao J, Liu S, He N, Zhou Y, Liu H, Zhao J, Ye C, Du Z, Pan G, Zhao A, Shao H, Zeng W, Wu P, Li C, Pan M, Li J, Yin X, Li D, Wang J, Zheng H, Wang W, Zhang X, Li S, Yang H, Lu C, Nielsen R, Zhou Z, Wang J, Xiang Z, Wang J. Xia Q, et al. Among authors: Jensen J. Science. 2009 Oct 16;326(5951):433-6. doi: 10.1126/science.1176620. Epub 2009 Aug 27. Science. 2009. PMID: 19713493 Free PMC article.
Accelerated adaptive evolution on a newly formed X chromosome.
Bachtrog D, Jensen JD, Zhang Z. Bachtrog D, et al. Among authors: Jensen JD. PLoS Biol. 2009 Apr 14;7(4):e82. doi: 10.1371/journal.pbio.1000082. PLoS Biol. 2009. PMID: 19402745 Free PMC article.
On reconciling single and recurrent hitchhiking models.
Jensen JD. Jensen JD. Genome Biol Evol. 2009 Sep 2;1:320-4. doi: 10.1093/gbe/evp031. Genome Biol Evol. 2009. PMID: 20333201 Free PMC article.
Inferring selection in partially sequenced regions.
Jensen JD, Thornton KR, Aquadro CF. Jensen JD, et al. Among authors: Thornton KR. Mol Biol Evol. 2008 Feb;25(2):438-46. doi: 10.1093/molbev/msm273. Epub 2007 Dec 28. Mol Biol Evol. 2008. PMID: 18165259
Approaches for identifying targets of positive selection.
Jensen JD, Wong A, Aquadro CF. Jensen JD, et al. Trends Genet. 2007 Nov;23(11):568-77. doi: 10.1016/j.tig.2007.08.009. Epub 2007 Oct 23. Trends Genet. 2007. PMID: 17959267 Review.
Progress and prospects in mapping recent selection in the genome.
Thornton KR, Jensen JD, Becquet C, Andolfatto P. Thornton KR, et al. Among authors: Jensen JD. Heredity (Edinb). 2007 Jun;98(6):340-8. doi: 10.1038/sj.hdy.6800967. Epub 2007 May 2. Heredity (Edinb). 2007. PMID: 17473869 Free article. Review.
Phylogenetic incongruence in the Drosophila melanogaster species group.
Wong A, Jensen JD, Pool JE, Aquadro CF. Wong A, et al. Among authors: Jensen JD. Mol Phylogenet Evol. 2007 Jun;43(3):1138-50. doi: 10.1016/j.ympev.2006.09.002. Epub 2006 Sep 9. Mol Phylogenet Evol. 2007. PMID: 17071113 Free PMC article.
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