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Year Number of Results
2016 77
2017 774
2018 53
2021 0
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774 results
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ChIP-Seq: A Powerful Tool for Studying Protein-DNA Interactions in Plants.
Chen X, Bhadauria V, Ma B. Chen X, et al. Curr Issues Mol Biol. 2018;27:171-180. doi: 10.21775/cimb.027.171. Epub 2017 Sep 8. Curr Issues Mol Biol. 2018. PMID: 28885181 Review.
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-Seq) is a widely used approach to identify the DNA regions bound by a specific protein in vivo. ...In this review, we reviewed the recent research advan
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-Seq) is a wi
ChIP-Seq Data Analysis to Define Transcriptional Regulatory Networks.
Pavesi G. Pavesi G. Adv Biochem Eng Biotechnol. 2017;160:1-14. doi: 10.1007/10_2016_43. Adv Biochem Eng Biotechnol. 2017. PMID: 28070596 Free article. Review.
Fundamental advances in this direction have been made possible by the introduction of experimental techniques such as Chromatin Immunoprecipitation, which, coupled with next-generation sequencing technologies (ChIP-Seq), permit the genome-wide i …
Fundamental advances in this direction have been made possible by the introduction of experimental techniques such as Chromatin Im
An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites.
Skene PJ, Henikoff S. Skene PJ, et al. Elife. 2017 Jan 16;6:e21856. doi: 10.7554/eLife.21856. Elife. 2017. PMID: 28079019 Free PMC article.
Unlike Chromatin Immunoprecipitation (ChIP), which fragments and solubilizes total chromatin, CUT&RUN is performed in situ, allowing for both quantitative high-resolution chromatin mapping and probing of the local chromatin environmen …
Unlike Chromatin Immunoprecipitation (ChIP), which fragments and solubilizes total chromatin, CUT&RUN is per …
Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation.
Nakato R, Shirahige K. Nakato R, et al. Brief Bioinform. 2017 Mar 1;18(2):279-290. doi: 10.1093/bib/bbw023. Brief Bioinform. 2017. PMID: 26979602 Free PMC article. Review.
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) analysis can detect protein/DNA-binding and histone-modification sites across an entire genome. ...Because many experimental considerations are relevant to the choice of a method in
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) analysis can detect protein/DNA-binding a
RUNX1-ETO Leukemia.
Lin S, Mulloy JC, Goyama S. Lin S, et al. Adv Exp Med Biol. 2017;962:151-173. doi: 10.1007/978-981-10-3233-2_11. Adv Exp Med Biol. 2017. PMID: 28299657 Review.
Proteomic surveies have shown that AML-ETO forms a stable complex with several transcription factors, including E proteins. Genome-wide transcriptome and ChIP-seq analyses have revealed the genes directly regulated by AML1-ETO, such as CEBPA. ...
Proteomic surveies have shown that AML-ETO forms a stable complex with several transcription factors, including E proteins. Genome-wide tran …
Comprehensive single-cell transcriptional profiling of a multicellular organism.
Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J. Cao J, et al. Science. 2017 Aug 18;357(6352):661-667. doi: 10.1126/science.aam8940. Science. 2017. PMID: 28818938 Free PMC article.
To resolve cellular heterogeneity, we developed a combinatorial indexing strategy to profile the transcriptomes of single cells or nuclei, termed sci-RNA-seq (single-cell combinatorial indexing RNA sequencing). We applied sci-RNA-seq to profile nearly 50,000 …
To resolve cellular heterogeneity, we developed a combinatorial indexing strategy to profile the transcriptomes of single cells or nuclei, t …
Mapping genome-wide transcription-factor binding sites using DAP-seq.
Bartlett A, O'Malley RC, Huang SC, Galli M, Nery JR, Gallavotti A, Ecker JR. Bartlett A, et al. Nat Protoc. 2017 Aug;12(8):1659-1672. doi: 10.1038/nprot.2017.055. Epub 2017 Jul 20. Nat Protoc. 2017. PMID: 28726847 Free PMC article.
To enable low-cost, high-throughput generation of cistrome and epicistrome maps for any organism, we developed DNA affinity purification sequencing (DAP-seq), a transcription factor (TF)-binding site (TFBS) discovery assay that couples affinity-purified TFs with nex …
To enable low-cost, high-throughput generation of cistrome and epicistrome maps for any organism, we developed DNA affinity purification …
Regulation of genome organization and gene expression by nuclear mechanotransduction.
Uhler C, Shivashankar GV. Uhler C, et al. Nat Rev Mol Cell Biol. 2017 Dec;18(12):717-727. doi: 10.1038/nrm.2017.101. Epub 2017 Oct 18. Nat Rev Mol Cell Biol. 2017. PMID: 29044247 Review.
In particular, recent progress in super-resolution imaging, in genome-wide application of RNA sequencing, chromatin immunoprecipitation and chromosome conformation capture and in theoretical modelling of 3D genome organization enables the exploration of the r …
In particular, recent progress in super-resolution imaging, in genome-wide application of RNA sequencing, chromatin immunop
Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks.
Kelley DZ, Flam EL, Izumchenko E, Danilova LV, Wulf HA, Guo T, Singman DA, Afsari B, Skaist AM, Considine M, Welch JA, Stavrovskaya E, Bishop JA, Westra WH, Khan Z, Koch WM, Sidransky D, Wheelan SJ, Califano JA, Favorov AV, Fertig EJ, Gaykalova DA. Kelley DZ, et al. Cancer Res. 2017 Dec 1;77(23):6538-6550. doi: 10.1158/0008-5472.CAN-17-0833. Epub 2017 Sep 25. Cancer Res. 2017. PMID: 28947419 Free PMC article.
Chromatin immunoprecipitation followed by sequencing (ChIP-Seq) has been utilized to study genome-wide chromatin structure in human cancer cell lines, yet numerous technical challenges limit comparable analyses in primary tumors. ...We fu
Chromatin immunoprecipitation followed by sequencing (ChIP-Seq) has been utilized to study genome-wide
Targeting super-enhancer-associated oncogenes in oesophageal squamous cell carcinoma.
Jiang YY, Lin DC, Mayakonda A, Hazawa M, Ding LW, Chien WW, Xu L, Chen Y, Xiao JF, Senapedis W, Baloglu E, Kanojia D, Shang L, Xu X, Yang H, Tyner JW, Wang MR, Koeffler HP. Jiang YY, et al. Gut. 2017 Aug;66(8):1358-1368. doi: 10.1136/gutjnl-2016-311818. Epub 2016 May 10. Gut. 2017. PMID: 27196599 Free PMC article.
DESIGN: High-throughput small-molecule inhibitor screening was performed to identify potent anti-OSCC compounds. Whole-transcriptome sequencing (RNA-Seq) and chromatin immunoprecipitation sequencing (ChIP-Seq) were conducted to dec …
DESIGN: High-throughput small-molecule inhibitor screening was performed to identify potent anti-OSCC compounds. Whole-transcriptome sequ
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