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Year Number of Results
2015 1
2016 1
2017 53
2018 822
2019 74
2020 2
2021 0
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822 results
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Page 1
ChIP-Seq: A Powerful Tool for Studying Protein-DNA Interactions in Plants.
Chen X, Bhadauria V, Ma B. Chen X, et al. Curr Issues Mol Biol. 2018;27:171-180. doi: 10.21775/cimb.027.171. Epub 2017 Sep 8. Curr Issues Mol Biol. 2018. PMID: 28885181 Review.
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-Seq) is a widely used approach to identify the DNA regions bound by a specific protein in vivo. ...In this review, we reviewed the recent research advan …
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-Seq) is a wi …
Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity.
Lowe EK, Cuomo C, Voronov D, Arnone MI. Lowe EK, et al. Methods Cell Biol. 2019;151:115-126. doi: 10.1016/bs.mcb.2018.11.001. Epub 2018 Dec 24. Methods Cell Biol. 2019. PMID: 30948003 Review.
ChiP-chip or ChIP-seq is better equipped for determining, genome-wide, whether binding of a given transcription factor (TF) to cis-regulatory elements occurs. ...Additionally, ATAC-seq is less expensive than ChIP-seq, requires less …
ChiP-chip or ChIP-seq is better equipped for determining, genome-wide, whether binding of a given transcription …
ChIP-seq.
Kim TH, Dekker J. Kim TH, et al. Cold Spring Harb Protoc. 2018 May 1;2018(5). doi: 10.1101/pdb.prot082644. Cold Spring Harb Protoc. 2018. PMID: 29717046
Owing to its digital nature, ChIP-seq has become the standard method for genome-wide ChIP analysis. ...Although a relatively small amount of ChIP DNA is required for ChIP-seq, the current sequencing platforms still require amplific …
Owing to its digital nature, ChIP-seq has become the standard method for genome-wide ChIP analysis. ...Although a relat …
Integrating ChIP-seq with other functional genomics data.
Jiang S, Mortazavi A. Jiang S, et al. Brief Funct Genomics. 2018 Mar 1;17(2):104-115. doi: 10.1093/bfgp/ely002. Brief Funct Genomics. 2018. PMID: 29579165 Free PMC article. Review.
Transcription is regulated by transcription factor (TF) binding at promoters and distal regulatory elements and histone modifications that control the accessibility of these elements. Chromatin immunoprecipitation followed by sequencing (ChIP-seq …
Transcription is regulated by transcription factor (TF) binding at promoters and distal regulatory elements and histone modifications that c …
Transcriptional Regulation in Prostate Cancer.
Labbé DP, Brown M. Labbé DP, et al. Cold Spring Harb Perspect Med. 2018 Nov 1;8(11):a030437. doi: 10.1101/cshperspect.a030437. Cold Spring Harb Perspect Med. 2018. PMID: 29530947 Free PMC article. Review.
We use functional (in vitro and in vivo) as well as clinical data to discuss evidence that unveils their roles in the initiation and progression of prostate cancer, with an emphasis on results of chromatin immunoprecipitation followed by high-throughput sequencin …
We use functional (in vitro and in vivo) as well as clinical data to discuss evidence that unveils their roles in the initiation and progres …
Analysis of ChIP-seq Data in R/Bioconductor.
de Santiago I, Carroll T. de Santiago I, et al. Methods Mol Biol. 2018;1689:195-226. doi: 10.1007/978-1-4939-7380-4_17. Methods Mol Biol. 2018. PMID: 29027176
The development of novel high-throughput sequencing methods for ChIP (chromatin immunoprecipitation) has provided a very powerful tool to study gene regulation in multiple conditions at unprecedented resolution and scale. ...Over the last years, an arr …
The development of novel high-throughput sequencing methods for ChIP (chromatin immunoprecipitation) has provide …
Targeted in situ genome-wide profiling with high efficiency for low cell numbers.
Skene PJ, Henikoff JG, Henikoff S. Skene PJ, et al. Nat Protoc. 2018 May;13(5):1006-1019. doi: 10.1038/nprot.2018.015. Epub 2018 Apr 12. Nat Protoc. 2018. PMID: 29651053
CUT&RUN outperforms the most widely used chromatin immunoprecipitation (ChIP) protocols in resolution, signal-to-noise ratio and depth of sequencing required. In contrast to ChIP, CUT&RUN is free of solubility and DNA accessibility artif …
CUT&RUN outperforms the most widely used chromatin immunoprecipitation (ChIP) protocols in resolution, signal-to-no …
ChIP-Quantitative Polymerase Chain Reaction (ChIP-qPCR).
Kim TH, Dekker J. Kim TH, et al. Cold Spring Harb Protoc. 2018 May 1;2018(5). doi: 10.1101/pdb.prot082628. Cold Spring Harb Protoc. 2018. PMID: 29717044
It is critical to determine if the ChIP actually enriched the DNA sequences that are associated with the target protein. ...If candidate target genes or potential sites are not available, ChIP-chip or ChIP-seq should be considered instead. Becau …
It is critical to determine if the ChIP actually enriched the DNA sequences that are associated with the target protein. ...If candid …
How to Combine ChIP with qPCR.
Asp P. Asp P. Methods Mol Biol. 2018;1689:29-42. doi: 10.1007/978-1-4939-7380-4_3. Methods Mol Biol. 2018. PMID: 29027162
Chromatin immunoprecipitation (ChIP) coupled with quantitative PCR (qPCR) has in the last 15 years become a basic mainstream tool in genomic research. Numerous commercially available ChIP kits, qPCR kits, and real-time PCR systems allow for quick and e …
Chromatin immunoprecipitation (ChIP) coupled with quantitative PCR (qPCR) has in the last 15 years become a basic mains …
Simplified ChIP-exo assays.
Rossi MJ, Lai WKM, Pugh BF. Rossi MJ, et al. Nat Commun. 2018 Jul 20;9(1):2842. doi: 10.1038/s41467-018-05265-7. Nat Commun. 2018. PMID: 30030442 Free PMC article.
ChIP-seq and ChIP-exo identify where proteins bind along any genome in vivo. Although ChIP-seq is widely adopted in academic research, it has inherently high noise. ...
ChIP-seq and ChIP-exo identify where proteins bind along any genome in vivo. Although ChIP-seq is widely …
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