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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2006 2
2009 3
2010 9
2011 10
2012 4
2013 2
2014 6
2015 3
2016 4
2017 4
2018 3
2019 4
2020 6
2021 3
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60 results
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ProteinVR: Web-based molecular visualization in virtual reality.
Cassidy KC, Šefčík J, Raghav Y, Chang A, Durrant JD. Cassidy KC, et al. Among authors: durrant jd. PLoS Comput Biol. 2020 Mar 31;16(3):e1007747. doi: 10.1371/journal.pcbi.1007747. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32231351 Free PMC article.
Computational approaches to mapping allosteric pathways.
Feher VA, Durrant JD, Van Wart AT, Amaro RE. Feher VA, et al. Among authors: durrant jd. Curr Opin Struct Biol. 2014 Apr;25:98-103. doi: 10.1016/j.sbi.2014.02.004. Epub 2014 Mar 22. Curr Opin Struct Biol. 2014. PMID: 24667124 Free PMC article. Review.
No single method prevails as best to identify allosteric signal propagation path(s), rather each has particular strengths in characterizing signals that occur over specific timescale ranges and magnitudes of conformational fluctuation. ...
No single method prevails as best to identify allosteric signal propagation path(s), rather each has particular strengths in characte …
LigGrep: a tool for filtering docked poses to improve virtual-screening hit rates.
Ha EJ, Lwin CT, Durrant JD. Ha EJ, et al. Among authors: durrant jd. J Cheminform. 2020 Nov 11;12(1):69. doi: 10.1186/s13321-020-00471-2. J Cheminform. 2020. PMID: 33292486 Free PMC article.
To demonstrate utility, we show that LigGrep can improve the hit rates of test VS targeting H. sapiens poly(ADPribose) polymerase 1 (HsPARP1), H. sapiens peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (HsPin1p), and S. cerevisiae hexokinase-2 (ScHxk2p). We hope tha …
To demonstrate utility, we show that LigGrep can improve the hit rates of test VS targeting H. sapiens poly(ADPribose) polymerase 1 (HsPARP1 …
Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser.
Kochnev Y, Hellemann E, Cassidy KC, Durrant JD. Kochnev Y, et al. Among authors: durrant jd. Bioinformatics. 2020 Aug 15;36(16):4513-4515. doi: 10.1093/bioinformatics/btaa579. Bioinformatics. 2020. PMID: 32559277 Free PMC article.
Webina runs Vina entirely in a web browser, so users need only visit a Webina-enabled webpage. The docking calculations take place on the user's own computer rather than a remote server. AVAILABILITY AND IMPLEMENTATION: A working version of the open-source Webina app can b …
Webina runs Vina entirely in a web browser, so users need only visit a Webina-enabled webpage. The docking calculations take place on the us …
60 results