22734688 21910920 21554763 22496633 19631244 23897661 19505889 21824426 - Search Results

Year	Number of Results
2009	2
2011	3
2012	2
2013	1
2023	0

1

A regulatory network modeled from wild-type gene expression data guides functional predictions in Caenorhabditis elegans development.

Stigler B, Chamberlin HM. Stigler B, et al. BMC Syst Biol. 2012 Jun 26;6:77. doi: 10.1186/1752-0509-6-77. BMC Syst Biol. 2012. PMID: 22734688 Free PMC article.

2

Probabilistic polynomial dynamical systems for reverse engineering of gene regulatory networks.

Dimitrova ES, Mitra I, Jarrah AS. Dimitrova ES, et al. EURASIP J Bioinform Syst Biol. 2011 Jun 6;2011(1):1. doi: 10.1186/1687-4153-2011-1. EURASIP J Bioinform Syst Biol. 2011. PMID: 21910920 Free PMC article.

3

Constraint-based analysis of gene interactions using restricted boolean networks and time-series data.

Higa CH, Louzada VH, Andrade TP, Hashimoto RF. Higa CH, et al. BMC Proc. 2011 May 28;5 Suppl 2(Suppl 2):S5. doi: 10.1186/1753-6561-5-S2-S5. BMC Proc. 2011. PMID: 21554763 Free PMC article.

4

What can causal networks tell us about metabolic pathways?

Blair RH, Kliebenstein DJ, Churchill GA. Blair RH, et al. PLoS Comput Biol. 2012;8(4):e1002458. doi: 10.1371/journal.pcbi.1002458. Epub 2012 Apr 5. PLoS Comput Biol. 2012. PMID: 22496633 Free PMC article.

5

Reverse engineering and verification of gene networks: principles, assumptions, and limitations of present methods and future perspectives.

He F, Balling R, Zeng AP. He F, et al. J Biotechnol. 2009 Nov;144(3):190-203. doi: 10.1016/j.jbiotec.2009.07.013. Epub 2009 Jul 22. J Biotechnol. 2009. PMID: 19631244 Review.

6

Computational approaches for understanding energy metabolism.

Shestov AA, Barker B, Gu Z, Locasale JW. Shestov AA, et al. Wiley Interdiscip Rev Syst Biol Med. 2013 Nov-Dec;5(6):733-50. doi: 10.1002/wsbm.1238. Epub 2013 Jul 29. Wiley Interdiscip Rev Syst Biol Med. 2013. PMID: 23897661 Free PMC article. Review.

7

Computational methods for discovering gene networks from expression data.

Lee WP, Tzou WS. Lee WP, et al. Brief Bioinform. 2009 Jul;10(4):408-23. doi: 10.1093/bib/bbp028. Brief Bioinform. 2009. PMID: 19505889 Review.

8

NETGEM: Network Embedded Temporal GEnerative Model for gene expression data.

Jethava V, Bhattacharyya C, Dubhashi D, Vemuri GN. Jethava V, et al. BMC Bioinformatics. 2011 Aug 8;12:327. doi: 10.1186/1471-2105-12-327. BMC Bioinformatics. 2011. PMID: 21824426 Free PMC article.

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