26684897 26435507 26058579 25658277 25301683 25290099 25149441 26903422 26704769 26954258 26824330 27155584 27225952 28785034 29092937 29385081 29953864 30022083 30130115 29794131 30382775 30519459 30511867 30582332 30980333 31235611 30702898 3179330 - Search Results

Year	Number of Results
2014	3
2015	4
2016	6
2017	2
2018	8
2019	6
2020	7
2021	7
2022	6
2023	1

1

Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries.

Rudney JD, Jagtap PD, Reilly CS, Chen R, Markowski TW, Higgins L, Johnson JE, Griffin TJ. Rudney JD, et al. Microbiome. 2015 Dec 19;3:69. doi: 10.1186/s40168-015-0136-z. Microbiome. 2015. PMID: 26684897 Free PMC article.

2

Characterizing Cardiac Molecular Mechanisms of Mammalian Hibernation via Quantitative Proteogenomics.

Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT. Vermillion KL, et al. J Proteome Res. 2015 Nov 6;14(11):4792-804. doi: 10.1021/acs.jproteome.5b00575. Epub 2015 Oct 23. J Proteome Res. 2015. PMID: 26435507

3

Metaproteomic analysis using the Galaxy framework.

Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Jagtap PD, et al. Proteomics. 2015 Oct;15(20):3553-65. doi: 10.1002/pmic.201500074. Epub 2015 Jul 24. Proteomics. 2015. PMID: 26058579

4

Multi-omic data analysis using Galaxy.

Boekel J, Chilton JM, Cooke IR, Horvatovich PL, Jagtap PD, Käll L, Lehtiö J, Lukasse P, Moerland PD, Griffin TJ. Boekel J, et al. Nat Biotechnol. 2015 Feb;33(2):137-9. doi: 10.1038/nbt.3134. Nat Biotechnol. 2015. PMID: 25658277 No abstract available.

5

Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework.

Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Shenykman GM, Bandhakavi S, Smith LM, Griffin TJ. Jagtap PD, et al. J Proteome Res. 2014 Dec 5;13(12):5898-908. doi: 10.1021/pr500812t. Epub 2014 Oct 23. J Proteome Res. 2014. PMID: 25301683 Free PMC article.

6

Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors.

Bhargava M, Becker TL, Viken KJ, Jagtap PD, Dey S, Steinbach MS, Wu B, Kumar V, Bitterman PB, Ingbar DH, Wendt CH. Bhargava M, et al. PLoS One. 2014 Oct 7;9(10):e109713. doi: 10.1371/journal.pone.0109713. eCollection 2014. PLoS One. 2014. PMID: 25290099 Free PMC article.

7

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations.

Sheynkman GM, Johnson JE, Jagtap PD, Shortreed MR, Onsongo G, Frey BL, Griffin TJ, Smith LM. Sheynkman GM, et al. BMC Genomics. 2014 Aug 22;15(1):703. doi: 10.1186/1471-2164-15-703. BMC Genomics. 2014. PMID: 25149441 Free PMC article.

8

Proteogenomic Analysis of a Hibernating Mammal Indicates Contribution of Skeletal Muscle Physiology to the Hibernation Phenotype.

Anderson KJ, Vermillion KL, Jagtap P, Johnson JE, Griffin TJ, Andrews MT. Anderson KJ, et al. J Proteome Res. 2016 Apr 1;15(4):1253-61. doi: 10.1021/acs.jproteome.5b01138. Epub 2016 Mar 3. J Proteome Res. 2016. PMID: 26903422

9

Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy.

Cesnik AJ, Shortreed MR, Sheynkman GM, Frey BL, Smith LM. Cesnik AJ, et al. J Proteome Res. 2016 Mar 4;15(3):800-8. doi: 10.1021/acs.jproteome.5b00817. Epub 2016 Jan 12. J Proteome Res. 2016. PMID: 26704769 Free PMC article.

10

Decreased Laminin Expression by Human Lung Epithelial Cells and Fibroblasts Cultured in Acellular Lung Scaffolds from Aged Mice.

Godin LM, Sandri BJ, Wagner DE, Meyer CM, Price AP, Akinnola I, Weiss DJ, Panoskaltsis-Mortari A. Godin LM, et al. PLoS One. 2016 Mar 8;11(3):e0150966. doi: 10.1371/journal.pone.0150966. eCollection 2016. PLoS One. 2016. PMID: 26954258 Free PMC article.

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