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Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation.

Huang D, Chen K, Song B, Wei Z, Su J, Coenen F, de Magalhães JP, Rigden DJ, Meng J. Huang D, et al. Nucleic Acids Res. 2022 Oct 14;50(18):10290-10310. doi: 10.1093/nar/gkac830. Nucleic Acids Res. 2022. PMID: 36155798 Free PMC article.

Gene Expression-Based Predication of RNA Pseudouridine Modification in Tumor Microenvironment and Prognosis of Glioma Patients.

Wang LJ, Lv P, Lou Y, Ye J. Wang LJ, et al. Front Cell Dev Biol. 2022 Jan 18;9:727595. doi: 10.3389/fcell.2021.727595. eCollection 2021. Front Cell Dev Biol. 2022. PMID: 35118063 Free PMC article.

m6A-TSHub: Unveiling the Context-specific m⁶A Methylation and m6A-affecting Mutations in 23 Human Tissues.

Song B, Huang D, Zhang Y, Wei Z, Su J, Pedro de Magalhães J, Rigden DJ, Meng J, Chen K. Song B, et al. Genomics Proteomics Bioinformatics. 2022 Sep 9:S1672-0229(22)00114-0. doi: 10.1016/j.gpb.2022.09.001. Online ahead of print. Genomics Proteomics Bioinformatics. 2022. PMID: 36096444 Free article.

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