55005610/Howard Hughes Medical Institute/United States[Grant Number] - Search Results

Year	Number of Results
2008	5
2009	7
2010	3
2022	0

1

Identification of replication origins in prokaryotic genomes.

Sernova NV, Gelfand MS. Sernova NV, et al. Brief Bioinform. 2008 Sep;9(5):376-91. doi: 10.1093/bib/bbn031. Epub 2008 Jul 26. Brief Bioinform. 2008. PMID: 18660512 Review.

2

Comparative genomics of ethanolamine utilization.

Tsoy O, Ravcheev D, Mushegian A. Tsoy O, et al. J Bacteriol. 2009 Dec;191(23):7157-64. doi: 10.1128/JB.00838-09. Epub 2009 Sep 25. J Bacteriol. 2009. PMID: 19783625 Free PMC article.

3

Evolution of regulatory motifs of bacterial transcription factors.

Gorbunov KY, Laikova ON, Rodionov DA, Gelfand MS, Lyubetsky VA. Gorbunov KY, et al. In Silico Biol. 2010;10(3):163-83. doi: 10.3233/ISB-2010-0425. In Silico Biol. 2010. PMID: 22430290

4

Engineering transcription factors with novel DNA-binding specificity using comparative genomics.

Desai TA, Rodionov DA, Gelfand MS, Alm EJ, Rao CV. Desai TA, et al. Nucleic Acids Res. 2009 May;37(8):2493-503. doi: 10.1093/nar/gkp079. Epub 2009 Mar 5. Nucleic Acids Res. 2009. PMID: 19264798 Free PMC article.

5

Modulation of alternative splicing by long-range RNA structures in Drosophila.

Raker VA, Mironov AA, Gelfand MS, Pervouchine DD. Raker VA, et al. Nucleic Acids Res. 2009 Aug;37(14):4533-44. doi: 10.1093/nar/gkp407. Epub 2009 May 22. Nucleic Acids Res. 2009. PMID: 19465384 Free PMC article.

6

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.

Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, Gelfand MS, Arkin AP, Mironov AA, Dubchak I. Novichkov PS, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. doi: 10.1093/nar/gkq531. Epub 2010 Jun 11. Nucleic Acids Res. 2010. PMID: 20542910 Free PMC article.

7

Comparative genomic analysis of T-box regulatory systems in bacteria.

Vitreschak AG, Mironov AA, Lyubetsky VA, Gelfand MS. Vitreschak AG, et al. RNA. 2008 Apr;14(4):717-35. doi: 10.1261/rna.819308. RNA. 2008. PMID: 18359782 Free PMC article.

8

Combining specificity determining and conserved residues improves functional site prediction.

Kalinina OV, Gelfand MS, Russell RB. Kalinina OV, et al. BMC Bioinformatics. 2009 Jun 9;10:174. doi: 10.1186/1471-2105-10-174. BMC Bioinformatics. 2009. PMID: 19508719 Free PMC article.

9

Systematic prediction of control proteins and their DNA binding sites.

Sorokin V, Severinov K, Gelfand MS. Sorokin V, et al. Nucleic Acids Res. 2009 Feb;37(2):441-51. doi: 10.1093/nar/gkn931. Epub 2008 Dec 4. Nucleic Acids Res. 2009. PMID: 19056824 Free PMC article.

10

A novel class of modular transporters for vitamins in prokaryotes.

Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, Eitinger T. Rodionov DA, et al. J Bacteriol. 2009 Jan;191(1):42-51. doi: 10.1128/JB.01208-08. Epub 2008 Oct 17. J Bacteriol. 2009. PMID: 18931129 Free PMC article.

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