Kin17, a mouse nuclear zinc finger protein that binds preferentially to curved DNA

Nucleic Acids Res. 1994 Oct 11;22(20):4335-41. doi: 10.1093/nar/22.20.4335.

Abstract

Kin17 is a 45 kDa protein encoded by the KIN17 gene located on mouse chromosome 2, band A. The kin17 amino acid sequence predicts two domains, which were shown to be functional: (i) a bipartite nuclear localization signal (NLS) that can drive the protein to the cell nucleus, (ii) a bona fide zinc finger of the C2H2 type. The zinc finger is involved in kin17 binding to double-stranded DNA since a mutant deleted of the zinc finger, kin17 delta 1, showed reduced binding. Single-stranded DNA was bound poorly by kin17. Interestingly, we found that kin17 protein showed preferential binding to curved DNA from either pBR322 or synthetic oligonucleotides. Binding of kin17 to a non-curved DNA segment increased after we had inserted into it a short curved synthetic oligonucleotide. Kin17 delta 2, a mutant deleted of 110 amino acids at the C-terminal end, still exhibited preferential binding to curved DNA and so did kin17 delta 1, suggesting that a domain recognizing curved DNA is located in the protein core.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Binding Sites
  • DNA / chemistry
  • DNA / metabolism*
  • DNA, Single-Stranded / metabolism
  • DNA-Binding Proteins / metabolism*
  • Mice
  • Molecular Sequence Data
  • Nuclear Proteins*
  • Recombinant Fusion Proteins
  • Restriction Mapping
  • Structure-Activity Relationship
  • Zinc Fingers*
  • beta-Galactosidase / genetics

Substances

  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Nuclear Proteins
  • Recombinant Fusion Proteins
  • Kin protein, mouse
  • DNA
  • beta-Galactosidase