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Assigning strains to bacterial species via the internet.
Bishop CJ, Aanensen DM, Jordan GE, Kilian M, Hanage WP, Spratt BG. Bishop CJ, et al. Among authors: aanensen dm. BMC Biol. 2009 Jan 26;7:3. doi: 10.1186/1741-7007-7-3. BMC Biol. 2009. PMID: 19171050 Free PMC article.
An ST131 clade and a phylogroup A clade bearing an O101-like O-antigen cluster predominate among bloodstream Escherichia coli isolates from South-West Nigeria hospitals.
Afolayan AO, Aboderin AO, Oaikhena AO, Odih EE, Ogunleye VO, Adeyemo AT, Adeyemo AT, Bejide OS, Underwood A, Argimón S, Abrudan M, Egwuenu A, Ihekweazu C, Aanensen DM, Okeke IN. Afolayan AO, et al. Among authors: aanensen dm. Microb Genom. 2022 Dec;8(12):mgen000863. doi: 10.1099/mgen.0.000863. Microb Genom. 2022. PMID: 36748556 Free PMC article.
Global scenario of the RmtE pan-aminoglycoside-resistance mechanism: emergence of the rmtE4 gene in South America associated with a hospital-related IncL plasmid.
Delgado-Blas JF, Ovejero CM, David S, Serna C, Pulido-Vadillo M, Montero N, Aanensen DM, Abadia-Patiño L, Gonzalez-Zorn B. Delgado-Blas JF, et al. Among authors: aanensen dm. Microb Genom. 2023 Mar;9(3):mgen000946. doi: 10.1099/mgen.0.000946. Microb Genom. 2023. PMID: 36961505 Free PMC article.
Comparing genomic variant identification protocols for Candida auris.
Li X, Muñoz JF, Gade L, Argimon S, Bougnoux ME, Bowers JR, Chow NA, Cuesta I, Farrer RA, Maufrais C, Monroy-Nieto J, Pradhan D, Uehling J, Vu D, Yeats CA, Aanensen DM, d'Enfert C, Engelthaler DM, Eyre DW, Fisher MC, Hagen F, Meyer W, Singh G, Alastruey-Izquierdo A, Litvintseva AP, Cuomo CA. Li X, et al. Among authors: aanensen dm. Microb Genom. 2023 Apr;9(4):mgen000979. doi: 10.1099/mgen.0.000979. Microb Genom. 2023. PMID: 37043380 Free PMC article.
Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization.
Carey ME, Dyson ZA, Argimón S, Cerdeira L, Yeats C, Aanensen D, Mboowa G, Baker S, Tessema SK, Smith AM, Okeke IN, Holt KE. Carey ME, et al. Open Forum Infect Dis. 2023 Jun 2;10(Suppl 1):S38-S46. doi: 10.1093/ofid/ofad044. eCollection 2023 May. Open Forum Infect Dis. 2023. PMID: 37274533 Free PMC article.
Genomics-informed outbreak investigations of SARS-CoV-2 using civet.
O'Toole Á, Hill V, Jackson B, Dewar R, Sahadeo N, Colquhoun R, Rooke S, McCrone JT, Duggan K, McHugh MP, Nicholls SM, Poplawski R; COVID-19 Genomics UK (COG-UK) Consortium; COVID-19 Impact Project (Trinidad & Tobago Group); Aanensen D, Holden M, Connor T, Loman N, Goodfellow I, Carrington CVF, Templeton K, Rambaut A. O'Toole Á, et al. PLOS Glob Public Health. 2022 Dec 9;2(12):e0000704. doi: 10.1371/journal.pgph.0000704. eCollection 2022. PLOS Glob Public Health. 2022. PMID: 36962792 Free PMC article.
153 results