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Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC.
Abe Y, Jo T, Matsuda Y, Matsunaga C, Katayama T, Ueda T. Abe Y, et al. J Biol Chem. 2007 Jun 15;282(24):17816-27. doi: 10.1074/jbc.M701841200. Epub 2007 Apr 9. J Biol Chem. 2007. PMID: 17420252
Lysozyme requires fluctuation of the active site for the manifestation of activity.
Imoto T, Ueda T, Tamura T, Isakari Y, Abe Y, Inoue M, Miki T, Kawano K, Yamada H. Imoto T, et al. Among authors: abe y. Protein Eng. 1994 Jun;7(6):743-8. doi: 10.1093/protein/7.6.743. Protein Eng. 1994. PMID: 7937704
Investigation of the structural basis for thermostability of DNA-binding protein HU from Bacillus stearothermophilus.
Kawamura S, Abe Y, Ueda T, Masumoto K, Imoto T, Yamasaki N, Kimura M. Kawamura S, et al. Among authors: abe y. J Biol Chem. 1998 Aug 7;273(32):19982-7. doi: 10.1074/jbc.273.32.19982. J Biol Chem. 1998. PMID: 9685334
Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein.
Takamatsu C, Umeda S, Ohsato T, Ohno T, Abe Y, Fukuoh A, Shinagawa H, Hamasaki N, Kang D. Takamatsu C, et al. Among authors: abe y. EMBO Rep. 2002 May;3(5):451-6. doi: 10.1093/embo-reports/kvf099. Epub 2002 Apr 18. EMBO Rep. 2002. PMID: 11964388 Free PMC article.
Human mitochondrial DNA is packaged with TFAM.
Alam TI, Kanki T, Muta T, Ukaji K, Abe Y, Nakayama H, Takio K, Hamasaki N, Kang D. Alam TI, et al. Among authors: abe y. Nucleic Acids Res. 2003 Mar 15;31(6):1640-5. doi: 10.1093/nar/gkg251. Nucleic Acids Res. 2003. PMID: 12626705 Free PMC article.
Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site.
Shioi S, Ose T, Maenaka K, Shiroishi M, Abe Y, Kohda D, Katayama T, Ueda T. Shioi S, et al. Among authors: abe y. Biochem Biophys Res Commun. 2005 Jan 28;326(4):766-76. doi: 10.1016/j.bbrc.2004.11.104. Biochem Biophys Res Commun. 2005. PMID: 15607735
Crystal structure of Tapes japonica Lysozyme with substrate analogue: structural basis of the catalytic mechanism and manifestation of its chitinase activity accompanied by quaternary structural change.
Goto T, Abe Y, Kakuta Y, Takeshita K, Imoto T, Ueda T. Goto T, et al. Among authors: abe y. J Biol Chem. 2007 Sep 14;282(37):27459-67. doi: 10.1074/jbc.M704555200. Epub 2007 Jul 13. J Biol Chem. 2007. PMID: 17631496
Crystal structures of K33 mutant hen lysozymes with enhanced activities.
Goto T, Ohkuri T, Shioi S, Abe Y, Imoto T, Ueda T. Goto T, et al. Among authors: abe y. J Biochem. 2008 Nov;144(5):619-23. doi: 10.1093/jb/mvn108. Epub 2008 Sep 6. J Biochem. 2008. PMID: 18776207
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