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The Sequence Alignment/Map format and SAMtools.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. Li H, et al. Among authors: abecasis g. Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505943 Free PMC article.
GRR: graphical representation of relationship errors.
Abecasis GR, Cherny SS, Cookson WO, Cardon LR. Abecasis GR, et al. Bioinformatics. 2001 Aug;17(8):742-3. doi: 10.1093/bioinformatics/17.8.742. Bioinformatics. 2001. PMID: 11524377
A first-generation linkage disequilibrium map of human chromosome 22.
Dawson E, Abecasis GR, Bumpstead S, Chen Y, Hunt S, Beare DM, Pabial J, Dibling T, Tinsley E, Kirby S, Carter D, Papaspyridonos M, Livingstone S, Ganske R, Lõhmussaar E, Zernant J, Tõnisson N, Remm M, Mägi R, Puurand T, Vilo J, Kurg A, Rice K, Deloukas P, Mott R, Metspalu A, Bentley DR, Cardon LR, Dunham I. Dawson E, et al. Nature. 2002 Aug 1;418(6897):544-8. doi: 10.1038/nature00864. Epub 2002 Jul 10. Nature. 2002. PMID: 12110843
LocusZoom: regional visualization of genome-wide association scan results.
Pruim RJ, Welch RP, Sanna S, Teslovich TM, Chines PS, Gliedt TP, Boehnke M, Abecasis GR, Willer CJ. Pruim RJ, et al. Bioinformatics. 2010 Sep 15;26(18):2336-7. doi: 10.1093/bioinformatics/btq419. Epub 2010 Jul 15. Bioinformatics. 2010. PMID: 20634204 Free PMC article.
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