Abramyan T - Search Results

1

Development of a tuned interfacial force field parameter set for the simulation of protein adsorption to silica glass.

Snyder JA, Abramyan T, Yancey JA, Thyparambil AA, Wei Y, Stuart SJ, Latour RA. Snyder JA, et al. Among authors: abramyan t. Biointerphases. 2012 Dec;7(1-4):56. doi: 10.1007/s13758-012-0056-4. Epub 2012 Sep 1. Biointerphases. 2012. PMID: 22941539 Free PMC article.

2

Parameterization of an interfacial force field for accurate representation of peptide adsorption free energy on high-density polyethylene.

Abramyan TM, Snyder JA, Yancey JA, Thyparambil AA, Wei Y, Stuart SJ, Latour RA. Abramyan TM, et al. Biointerphases. 2015 Jun 27;10(2):021002. doi: 10.1116/1.4916361. Biointerphases. 2015. PMID: 25818122 Free PMC article.

3

Cluster analysis of molecular simulation trajectories for systems where both conformation and orientation of the sampled states are important.

Abramyan TM, Snyder JA, Thyparambil AA, Stuart SJ, Latour RA. Abramyan TM, et al. J Comput Chem. 2016 Aug 5;37(21):1973-82. doi: 10.1002/jcc.24416. Epub 2016 Jun 12. J Comput Chem. 2016. PMID: 27292100 Free PMC article.

4

Application of advanced sampling and analysis methods to predict the structure of adsorbed protein on a material surface.

Abramyan TM, Hyde-Volpe DL, Stuart SJ, Latour RA. Abramyan TM, et al. Biointerphases. 2017 May 17;12(2):02D409. doi: 10.1116/1.4983274. Biointerphases. 2017. PMID: 28514864 Free PMC article.

5

Site of Tagging Influences the Ochratoxin Recognition by Peptide NFO4: A Molecular Dynamics Study.

Thyparambil AA, Abramyan TM, Bazin I, Guiseppi-Elie A. Thyparambil AA, et al. Among authors: abramyan tm. J Chem Inf Model. 2017 Aug 28;57(8):2035-2044. doi: 10.1021/acs.jcim.7b00312. Epub 2017 Aug 16. J Chem Inf Model. 2017. PMID: 28753003

6

Off-Pocket Activity Cliffs: A Puzzling Facet of Molecular Recognition.

Abramyan TM, An Y, Kireev D. Abramyan TM, et al. J Chem Inf Model. 2020 Jan 27;60(1):152-161. doi: 10.1021/acs.jcim.9b00731. Epub 2019 Dec 16. J Chem Inf Model. 2020. PMID: 31790251

7

An atypical heterotrimeric Gα protein has substantially reduced nucleotide binding but retains nucleotide-independent interactions with its cognate RGS protein and Gβγ dimer.

Lou F, Abramyan TM, Jia H, Tropsha A, Jones AM. Lou F, et al. Among authors: abramyan tm. J Biomol Struct Dyn. 2020 Oct;38(17):5204-5218. doi: 10.1080/07391102.2019.1704879. Epub 2019 Dec 23. J Biomol Struct Dyn. 2020. PMID: 31838952 Free PMC article.

8

A chemical probe targeting the PWWP domain alters NSD2 nucleolar localization.

Dilworth D, Hanley RP, Ferreira de Freitas R, Allali-Hassani A, Zhou M, Mehta N, Marunde MR, Ackloo S, Carvalho Machado RA, Khalili Yazdi A, Owens DDG, Vu V, Nie DY, Alqazzaz M, Marcon E, Li F, Chau I, Bolotokova A, Qin S, Lei M, Liu Y, Szewczyk MM, Dong A, Kazemzadeh S, Abramyan T, Popova IK, Hall NW, Meiners MJ, Cheek MA, Gibson E, Kireev D, Greenblatt JF, Keogh MC, Min J, Brown PJ, Vedadi M, Arrowsmith CH, Barsyte-Lovejoy D, James LI, Schapira M. Dilworth D, et al. Among authors: abramyan t. Nat Chem Biol. 2022 Jan;18(1):56-63. doi: 10.1038/s41589-021-00898-0. Epub 2021 Nov 15. Nat Chem Biol. 2022. PMID: 34782742 Free PMC article.

9

Discovery of selective activators of PRC2 mutant EED-I363M.

Suh JL, Barnash KD, Abramyan TM, Li F, The J, Engelberg IA, Vedadi M, Brown PJ, Kireev DB, Arrowsmith CH, James LI, Frye SV. Suh JL, et al. Among authors: abramyan tm. Sci Rep. 2019 Apr 25;9(1):6524. doi: 10.1038/s41598-019-43005-z. Sci Rep. 2019. PMID: 31024026 Free PMC article.

10

AI is a viable alternative to high throughput screening: a 318-target study.

Atomwise AIMS Program. Atomwise AIMS Program. Sci Rep. 2024 Apr 2;14(1):7526. doi: 10.1038/s41598-024-54655-z. Sci Rep. 2024. PMID: 38565852 Free PMC article.

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