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RNA editing of protein sequences: a rare event in human transcriptomes.
Kleinman CL, Adoue V, Majewski J. Kleinman CL, et al. Among authors: adoue v. RNA. 2012 Sep;18(9):1586-96. doi: 10.1261/rna.033233.112. Epub 2012 Jul 25. RNA. 2012. PMID: 22832026 Free PMC article.
Interrogation of allelic chromatin states in human cells by high-density ChIP-genotyping.
Light N, Adoue V, Ge B, Chen SH, Kwan T, Pastinen T. Light N, et al. Among authors: adoue v. Epigenetics. 2014 Sep;9(9):1238-51. doi: 10.4161/epi.29920. Epub 2014 Jul 23. Epigenetics. 2014. PMID: 25055051 Free PMC article.
Global identification of conserved post-transcriptional regulatory programs in trypanosomatids.
Najafabadi HS, Lu Z, MacPherson C, Mehta V, Adoue V, Pastinen T, Salavati R. Najafabadi HS, et al. Among authors: adoue v. Nucleic Acids Res. 2013 Oct;41(18):8591-600. doi: 10.1093/nar/gkt647. Epub 2013 Jul 22. Nucleic Acids Res. 2013. PMID: 23877242 Free PMC article.
Human genetics in full resolution.
Schiavi A, Light N, Adoue V, Busche S, Pastinen T. Schiavi A, et al. Among authors: adoue v. Genome Biol. 2011 Nov 24;12(11):309. doi: 10.1186/gb-2011-12-11-309. Genome Biol. 2011. PMID: 22115312 Free PMC article.
Global analysis of the impact of environmental perturbation on cis-regulation of gene expression.
Grundberg E, Adoue V, Kwan T, Ge B, Duan QL, Lam KC, Koka V, Kindmark A, Weiss ST, Tantisira K, Mallmin H, Raby BA, Nilsson O, Pastinen T. Grundberg E, et al. Among authors: adoue v. PLoS Genet. 2011 Jan 20;7(1):e1001279. doi: 10.1371/journal.pgen.1001279. PLoS Genet. 2011. PMID: 21283786 Free PMC article.
Allelic expression mapping across cellular lineages to establish impact of non-coding SNPs.
Adoue V, Schiavi A, Light N, Almlöf JC, Lundmark P, Ge B, Kwan T, Caron M, Rönnblom L, Wang C, Chen SH, Goodall AH, Cambien F, Deloukas P, Ouwehand WH, Syvänen AC, Pastinen T. Adoue V, et al. Mol Syst Biol. 2014 Oct 16;10(10):754. doi: 10.15252/msb.20145114. Mol Syst Biol. 2014. PMID: 25326100 Free PMC article.
Long-range enhancer differentially regulated by c-Jun and JunD controls peptidylarginine deiminase-3 gene in keratinocytes.
Adoue V, Chavanas S, Coudane F, Méchin MC, Caubet C, Ying S, Dong S, Duplan H, Charveron M, Takahara H, Serre G, Simon M. Adoue V, et al. J Mol Biol. 2008 Dec 31;384(5):1048-57. doi: 10.1016/j.jmb.2008.10.019. Epub 2008 Oct 15. J Mol Biol. 2008. PMID: 18952102
Analysis of expressed SNPs identifies variable extents of expression from the human inactive X chromosome.
Cotton AM, Ge B, Light N, Adoue V, Pastinen T, Brown CJ. Cotton AM, et al. Among authors: adoue v. Genome Biol. 2013 Nov 1;14(11):R122. doi: 10.1186/gb-2013-14-11-r122. Genome Biol. 2013. PMID: 24176135 Free PMC article.
Association of breast cancer risk with genetic variants showing differential allelic expression: Identification of a novel breast cancer susceptibility locus at 4q21.
Hamdi Y, Soucy P, Adoue V, Michailidou K, Canisius S, Lemaçon A, Droit A, Andrulis IL, Anton-Culver H, Arndt V, Baynes C, Blomqvist C, Bogdanova NV, Bojesen SE, Bolla MK, Bonanni B, Borresen-Dale AL, Brand JS, Brauch H, Brenner H, Broeks A, Burwinkel B, Chang-Claude J; NBCS Collaborators, Couch FJ, Cox A, Cross SS, Czene K, Darabi H, Dennis J, Devilee P, Dörk T, Dos-Santos-Silva I, Eriksson M, Fasching PA, Figueroa J, Flyger H, García-Closas M, Giles GG, Goldberg MS, González-Neira A, Grenaker-Alnæs G, Guénel P, Haeberle L, Haiman CA, Hamann U, Hallberg E, Hooning MJ, Hopper JL, Jakubowska A, Jones M, Kabisch M, Kataja V, Lambrechts D, Le Marchand L, Lindblom A, Lubinski J, Mannermaa A, Maranian M, Margolin S, Marme F, Milne RL, Neuhausen SL, Nevanlinna H, Neven P, Olswold C, Peto J, Plaseska-Karanfilska D, Pylkäs K, Radice P, Rudolph A, Sawyer EJ, Schmidt MK, Shu XO, Southey MC, Swerdlow A, Tollenaar RA, Tomlinson I, Torres D, Truong T, Vachon C, Van Den Ouweland AM, Wang Q, Winqvist R; kConFab/AOCS Investigators, Zheng W, Benitez J, Chenevix-Trench G, Dunning AM, Pharoah PD, Kristensen V, Hall P, Easton DF, Pastinen T, Nord S, Simard J. Hamdi Y, et al. Among authors: adoue v. Oncotarget. 2016 Dec 6;7(49):80140-80163. doi: 10.18632/oncotarget.12818. Oncotarget. 2016. PMID: 27792995 Free PMC article.
Fusion of TTYH1 with the C19MC microRNA cluster drives expression of a brain-specific DNMT3B isoform in the embryonal brain tumor ETMR.
Kleinman CL, Gerges N, Papillon-Cavanagh S, Sin-Chan P, Pramatarova A, Quang DA, Adoue V, Busche S, Caron M, Djambazian H, Bemmo A, Fontebasso AM, Spence T, Schwartzentruber J, Albrecht S, Hauser P, Garami M, Klekner A, Bognar L, Montes JL, Staffa A, Montpetit A, Berube P, Zakrzewska M, Zakrzewski K, Liberski PP, Dong Z, Siegel PM, Duchaine T, Perotti C, Fleming A, Faury D, Remke M, Gallo M, Dirks P, Taylor MD, Sladek R, Pastinen T, Chan JA, Huang A, Majewski J, Jabado N. Kleinman CL, et al. Among authors: adoue v. Nat Genet. 2014 Jan;46(1):39-44. doi: 10.1038/ng.2849. Epub 2013 Dec 8. Nat Genet. 2014. PMID: 24316981
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