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The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain.
Gunbin KV, Afonnikov DA, Kolchanov NA, Derevianko AP, Rogaev EI. Gunbin KV, et al. Among authors: afonnikov da. BMC Genomics. 2015;16 Suppl 13(Suppl 13):S4. doi: 10.1186/1471-2164-16-S13-S4. Epub 2015 Dec 16. BMC Genomics. 2015. PMID: 26693966 Free PMC article.
Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions.
Gunbin KV, Afonnikov DA, Kolchanov NA. Gunbin KV, et al. Among authors: afonnikov da. BMC Genomics. 2009 Dec 30;10:639. doi: 10.1186/1471-2164-10-639. BMC Genomics. 2009. PMID: 20042074 Free PMC article.
A compendium of human genes regulating feeding behavior and body weight, its functional characterization and identification of GWAS genes involved in brain-specific PPI network.
Ignatieva EV, Afonnikov DA, Saik OV, Rogaev EI, Kolchanov NA. Ignatieva EV, et al. Among authors: afonnikov da. BMC Genet. 2016 Dec 22;17(Suppl 3):158. doi: 10.1186/s12863-016-0466-2. BMC Genet. 2016. PMID: 28105929 Free PMC article.
High temperature and pressure influence the interdomain orientation of Nip7 proteins from P. abyssi and P. furiosus: MD simulations.
Medvedev KE, Kolchanov NA, Afonnikov DA. Medvedev KE, et al. Among authors: afonnikov da. J Biomol Struct Dyn. 2018 Jan;36(1):68-82. doi: 10.1080/07391102.2016.1268070. Epub 2017 Jan 4. J Biomol Struct Dyn. 2018. PMID: 27924686
CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.
Afonnikov DA, Kolchanov NA. Afonnikov DA, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W64-8. doi: 10.1093/nar/gkh451. Nucleic Acids Res. 2004. PMID: 15215352 Free PMC article.
Adult Opisthorchis felineus major protein fractions deduced from transcripts: comparison with liver flukes Opisthorchis viverrini and Clonorchis sinensis.
Pomaznoy M, Tatkov S, Katokhin A, Afonnikov D, Babenko V, Furman D, Brusentsov I, Belavin P, Najakshin A, Guselnikov S, Vasiliev G, Sivkov A, Prokhortchouk E, Skryabin K, Mordvinov V. Pomaznoy M, et al. Exp Parasitol. 2013 Oct;135(2):297-306. doi: 10.1016/j.exppara.2013.07.011. Epub 2013 Jul 25. Exp Parasitol. 2013. PMID: 23891942
Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.
Mustafin ZS, Lashin SA, Matushkin YG, Gunbin KV, Afonnikov DA. Mustafin ZS, et al. Among authors: afonnikov da. BMC Bioinformatics. 2017 Jan 27;18(Suppl 1):1427. doi: 10.1186/s12859-016-1427-5. BMC Bioinformatics. 2017. PMID: 28466792 Free PMC article.
Molecular evolution of cyclin proteins in animals and fungi.
Gunbin KV, Suslov VV, Turnaev II, Afonnikov DA, Kolchanov NA. Gunbin KV, et al. Among authors: afonnikov da. BMC Evol Biol. 2011 Jul 28;11:224. doi: 10.1186/1471-2148-11-224. BMC Evol Biol. 2011. PMID: 21798004 Free PMC article.
Haplotype analysis of APOE intragenic SNPs.
Babenko VN, Afonnikov DA, Ignatieva EV, Klimov AV, Gusev FE, Rogaev EI. Babenko VN, et al. Among authors: afonnikov da. BMC Neurosci. 2018 Apr 19;19(Suppl 1):16. doi: 10.1186/s12868-018-0413-4. BMC Neurosci. 2018. PMID: 29745836 Free PMC article.
Pluripotency gene network dynamics: System views from parametric analysis.
Akberdin IR, Omelyanchuk NA, Fadeev SI, Leskova NE, Oschepkova EA, Kazantsev FV, Matushkin YG, Afonnikov DA, Kolchanov NA. Akberdin IR, et al. Among authors: afonnikov da. PLoS One. 2018 Mar 29;13(3):e0194464. doi: 10.1371/journal.pone.0194464. eCollection 2018. PLoS One. 2018. PMID: 29596533 Free PMC article.
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