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The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data.
Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J, McBride R, Agravat S, Campbell MP, Kato M, Ranzinger R, Kettner C, York WS. Kolarich D, et al. Among authors: agravat s. Mol Cell Proteomics. 2013 Apr;12(4):991-5. doi: 10.1074/mcp.O112.026492. Epub 2013 Feb 1. Mol Cell Proteomics. 2013. PMID: 23378518 Free PMC article.
The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.
Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C. Struwe WB, et al. Among authors: agravat s. Glycobiology. 2016 Sep;26(9):907-910. doi: 10.1093/glycob/cww082. Epub 2016 Sep 21. Glycobiology. 2016. PMID: 27654115 Free PMC article.
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.
Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, Packer NH, Ranzinger R, Rapp E, Rudd PM, Struwe WB, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C, Paulson JC, Feizi T, Smith DF. Liu Y, et al. Among authors: agravat s. Glycobiology. 2017 Apr;27(4):280-284. doi: 10.1093/glycob/cww118. Epub 2016 Nov 22. Glycobiology. 2017. PMID: 27993942 Free PMC article.
MIRAGE: the minimum information required for a glycomics experiment.
York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, Kettner C. York WS, et al. Among authors: agravat s. Glycobiology. 2014 May;24(5):402-6. doi: 10.1093/glycob/cwu018. Epub 2014 Mar 20. Glycobiology. 2014. PMID: 24653214 Free PMC article.
GlyTouCan 1.0--The international glycan structure repository.
Aoki-Kinoshita K, Agravat S, Aoki NP, Arpinar S, Cummings RD, Fujita A, Fujita N, Hart GM, Haslam SM, Kawasaki T, Matsubara M, Moreman KW, Okuda S, Pierce M, Ranzinger R, Shikanai T, Shinmachi D, Solovieva E, Suzuki Y, Tsuchiya S, Yamada I, York WS, Zaia J, Narimatsu H. Aoki-Kinoshita K, et al. Among authors: agravat s. Nucleic Acids Res. 2016 Jan 4;44(D1):D1237-42. doi: 10.1093/nar/gkv1041. Epub 2015 Oct 17. Nucleic Acids Res. 2016. PMID: 26476458 Free PMC article.
GlycoPattern: a web platform for glycan array mining.
Agravat SB, Saltz JH, Cummings RD, Smith DF. Agravat SB, et al. Bioinformatics. 2014 Dec 1;30(23):3417-8. doi: 10.1093/bioinformatics/btu559. Epub 2014 Aug 20. Bioinformatics. 2014. PMID: 25143288 Free PMC article.
Computational approaches to define a human milk metaglycome.
Agravat SB, Song X, Rojsajjakul T, Cummings RD, Smith DF. Agravat SB, et al. Bioinformatics. 2016 May 15;32(10):1471-8. doi: 10.1093/bioinformatics/btw048. Epub 2016 Jan 23. Bioinformatics. 2016. PMID: 26803164 Free PMC article.
Automated motif discovery from glycan array data.
Cholleti SR, Agravat S, Morris T, Saltz JH, Song X, Cummings RD, Smith DF. Cholleti SR, et al. Among authors: agravat s. OMICS. 2012 Oct;16(10):497-512. doi: 10.1089/omi.2012.0013. Epub 2012 Aug 9. OMICS. 2012. PMID: 22877213 Free PMC article.
Temporal abstraction-based clinical phenotyping with Eureka!
Post AR, Kurc T, Willard R, Rathod H, Mansour M, Pai AK, Torian WM, Agravat S, Sturm S, Saltz JH. Post AR, et al. Among authors: agravat s. AMIA Annu Symp Proc. 2013 Nov 16;2013:1160-9. eCollection 2013. AMIA Annu Symp Proc. 2013. PMID: 24551400 Free PMC article.
Semantic ETL into i2b2 with Eureka!
Post AR, Krc T, Rathod H, Agravat S, Mansour M, Torian W, Saltz JH. Post AR, et al. Among authors: agravat s. AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:203-7. eCollection 2013. AMIA Jt Summits Transl Sci Proc. 2013. PMID: 24303265 Free PMC article.
13 results