Ahrens CH - Search Results

1

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.

Somerville V, Lutz S, Schmid M, Frei D, Moser A, Irmler S, Frey JE, Ahrens CH. Somerville V, et al. Among authors: ahrens ch. BMC Microbiol. 2019 Jun 25;19(1):143. doi: 10.1186/s12866-019-1500-0. BMC Microbiol. 2019. PMID: 31238873 Free PMC article.

2

Short communication: Heat-resistant Escherichia coli as potential persistent reservoir of extended-spectrum β-lactamases and Shiga toxin-encoding phages in dairy.

Marti R, Muniesa M, Schmid M, Ahrens CH, Naskova J, Hummerjohann J. Marti R, et al. Among authors: ahrens ch. J Dairy Sci. 2016 Nov;99(11):8622-8632. doi: 10.3168/jds.2016-11076. Epub 2016 Aug 24. J Dairy Sci. 2016. PMID: 27568050 Free article.

3

Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi.

Hilber-Bodmer M, Schmid M, Ahrens CH, Freimoser FM. Hilber-Bodmer M, et al. Among authors: ahrens ch. BMC Microbiol. 2017 Jan 5;17(1):4. doi: 10.1186/s12866-016-0908-z. BMC Microbiol. 2017. PMID: 28056814 Free PMC article.

4

Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites.

Remus-Emsermann MNP, Schmid M, Gekenidis MT, Pelludat C, Frey JE, Ahrens CH, Drissner D. Remus-Emsermann MNP, et al. Among authors: ahrens ch. Stand Genomic Sci. 2016 Sep 26;11:75. doi: 10.1186/s40793-016-0190-6. eCollection 2016. Stand Genomic Sci. 2016. PMID: 28300228 Free PMC article.

5

Biofilm Formation Potential of Heat-Resistant Escherichia coli Dairy Isolates and the Complete Genome of Multidrug-Resistant, Heat-Resistant Strain FAM21845.

Marti R, Schmid M, Kulli S, Schneeberger K, Naskova J, Knøchel S, Ahrens CH, Hummerjohann J. Marti R, et al. Among authors: ahrens ch. Appl Environ Microbiol. 2017 Jul 17;83(15):e00628-17. doi: 10.1128/AEM.00628-17. Print 2017 Aug 1. Appl Environ Microbiol. 2017. PMID: 28550056 Free PMC article.

6

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics.

Omasits U, Varadarajan AR, Schmid M, Goetze S, Melidis D, Bourqui M, Nikolayeva O, Québatte M, Patrignani A, Dehio C, Frey JE, Robinson MD, Wollscheid B, Ahrens CH. Omasits U, et al. Among authors: ahrens ch. Genome Res. 2017 Dec;27(12):2083-2095. doi: 10.1101/gr.218255.116. Epub 2017 Nov 15. Genome Res. 2017. PMID: 29141959 Free PMC article.

7

Comparative Genomics of Completely Sequenced Lactobacillus helveticus Genomes Provides Insights into Strain-Specific Genes and Resolves Metagenomics Data Down to the Strain Level.

Schmid M, Muri J, Melidis D, Varadarajan AR, Somerville V, Wicki A, Moser A, Bourqui M, Wenzel C, Eugster-Meier E, Frey JE, Irmler S, Ahrens CH. Schmid M, et al. Among authors: ahrens ch. Front Microbiol. 2018 Jan 30;9:63. doi: 10.3389/fmicb.2018.00063. eCollection 2018. Front Microbiol. 2018. PMID: 29441050 Free PMC article.

8

Pseudomonas orientalis F9: A Potent Antagonist against Phytopathogens with Phytotoxic Effect in the Apple Flower.

Zengerer V, Schmid M, Bieri M, Müller DC, Remus-Emsermann MNP, Ahrens CH, Pelludat C. Zengerer V, et al. Among authors: ahrens ch. Front Microbiol. 2018 Feb 9;9:145. doi: 10.3389/fmicb.2018.00145. eCollection 2018. Front Microbiol. 2018. PMID: 29479340 Free PMC article.

9

Seasonal Dynamics of Glyphosate and AMPA in Lake Greifensee: Rapid Microbial Degradation in the Epilimnion During Summer.

Huntscha S, Stravs MA, Bühlmann A, Ahrens CH, Frey JE, Pomati F, Hollender J, Buerge IJ, Balmer ME, Poiger T. Huntscha S, et al. Among authors: ahrens ch. Environ Sci Technol. 2018 Apr 17;52(8):4641-4649. doi: 10.1021/acs.est.8b00314. Epub 2018 Mar 27. Environ Sci Technol. 2018. PMID: 29584408

10

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.

Schmid M, Frei D, Patrignani A, Schlapbach R, Frey JE, Remus-Emsermann MNP, Ahrens CH. Schmid M, et al. Among authors: ahrens ch. Nucleic Acids Res. 2018 Sep 28;46(17):8953-8965. doi: 10.1093/nar/gky726. Nucleic Acids Res. 2018. PMID: 30137508 Free PMC article.

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