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Page 1
Transcription-mediated supercoiling regulates genome folding and loop formation.
Neguembor MV, Martin L, Castells-García Á, Gómez-García PA, Vicario C, Carnevali D, AlHaj Abed J, Granados A, Sebastian-Perez R, Sottile F, Solon J, Wu CT, Lakadamyali M, Cosma MP. Neguembor MV, et al. Among authors: alhaj abed j. Mol Cell. 2021 Aug 5;81(15):3065-3081.e12. doi: 10.1016/j.molcel.2021.06.009. Epub 2021 Jul 22. Mol Cell. 2021. PMID: 34297911 Free PMC article.
MiOS, an integrated imaging and computational strategy to model gene folding with nucleosome resolution.
Neguembor MV, Arcon JP, Buitrago D, Lema R, Walther J, Garate X, Martin L, Romero P, AlHaj Abed J, Gut M, Blanc J, Lakadamyali M, Wu CT, Brun Heath I, Orozco M, Dans PD, Cosma MP. Neguembor MV, et al. Among authors: alhaj abed j. Nat Struct Mol Biol. 2022 Oct;29(10):1011-1023. doi: 10.1038/s41594-022-00839-y. Epub 2022 Oct 11. Nat Struct Mol Biol. 2022. PMID: 36220894 Free PMC article.
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.
Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SD, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, Russell S, Durand NC, Rao SSP, Kishi JY, Soler-Vila P, Di Pierro M, Onuchic JN, Callahan SP, Schreiner JM, Stuckey JA, Yin P, Aiden EL, Marti-Renom MA, Wu CT. Nir G, et al. Among authors: alhaj abed j. PLoS Genet. 2018 Dec 26;14(12):e1007872. doi: 10.1371/journal.pgen.1007872. eCollection 2018 Dec. PLoS Genet. 2018. PMID: 30586358 Free PMC article.
The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos.
Erceg J, AlHaj Abed J, Goloborodko A, Lajoie BR, Fudenberg G, Abdennur N, Imakaev M, McCole RB, Nguyen SC, Saylor W, Joyce EF, Senaratne TN, Hannan MA, Nir G, Dekker J, Mirny LA, Wu CT. Erceg J, et al. Among authors: alhaj abed j. Nat Commun. 2019 Oct 3;10(1):4486. doi: 10.1038/s41467-019-12211-8. Nat Commun. 2019. PMID: 31582744 Free PMC article.