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Evolution of primate orphan proteins.
Toll-Riera M, Castelo R, Bellora N, Albà MM. Toll-Riera M, et al. Biochem Soc Trans. 2009 Aug;37(Pt 4):778-82. doi: 10.1042/BST0370778. Biochem Soc Trans. 2009. PMID: 19614593 Review.
Comparative genomics of mammalian hibernators using gene networks.
Villanueva-Cañas JL, Faherty SL, Yoder AD, Albà MM. Villanueva-Cañas JL, et al. Integr Comp Biol. 2014 Sep;54(3):452-62. doi: 10.1093/icb/icu048. Epub 2014 May 31. Integr Comp Biol. 2014. PMID: 24881044
Gene Expression Profiling in the Hibernating Primate, Cheirogaleus Medius.
Faherty SL, Villanueva-Cañas JL, Klopfer PH, Albà MM, Yoder AD. Faherty SL, et al. Genome Biol Evol. 2016 Aug 25;8(8):2413-26. doi: 10.1093/gbe/evw163. Genome Biol Evol. 2016. PMID: 27412611 Free PMC article.
Translation of neutrally evolving peptides provides a basis for de novo gene evolution.
Ruiz-Orera J, Verdaguer-Grau P, Villanueva-Cañas JL, Messeguer X, Albà MM. Ruiz-Orera J, et al. Among authors: alba mm. Nat Ecol Evol. 2018 May;2(5):890-896. doi: 10.1038/s41559-018-0506-6. Epub 2018 Mar 19. Nat Ecol Evol. 2018. PMID: 29556078
No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution.
Domazet-Lošo T, Carvunis AR, Albà MM, Šestak MS, Bakaric R, Neme R, Tautz D. Domazet-Lošo T, et al. Mol Biol Evol. 2017 Apr 1;34(4):843-856. doi: 10.1093/molbev/msw284. Mol Biol Evol. 2017. PMID: 28087778 Free PMC article.
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.
Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Albà MM, Gabaldón T, Alioto T, Godoy JA. Abascal F, et al. Genome Biol. 2016 Dec 14;17(1):251. doi: 10.1186/s13059-016-1090-1. Genome Biol. 2016. PMID: 27964752 Free PMC article.
Key Role of Amino Acid Repeat Expansions in the Functional Diversification of Duplicated Transcription Factors.
Radó-Trilla N, Arató K, Pegueroles C, Raya A, de la Luna S, Albà MM. Radó-Trilla N, et al. Mol Biol Evol. 2015 Sep;32(9):2263-72. doi: 10.1093/molbev/msv103. Epub 2015 Apr 29. Mol Biol Evol. 2015. PMID: 25931513 Free PMC article.
Structure and age jointly influence rates of protein evolution.
Toll-Riera M, Bostick D, Albà MM, Plotkin JB. Toll-Riera M, et al. PLoS Comput Biol. 2012 May;8(5):e1002542. doi: 10.1371/journal.pcbi.1002542. Epub 2012 May 31. PLoS Comput Biol. 2012. PMID: 22693443 Free PMC article.
Origin of primate orphan genes: a comparative genomics approach.
Toll-Riera M, Bosch N, Bellora N, Castelo R, Armengol L, Estivill X, Albà MM. Toll-Riera M, et al. Mol Biol Evol. 2009 Mar;26(3):603-12. doi: 10.1093/molbev/msn281. Epub 2008 Dec 8. Mol Biol Evol. 2009. PMID: 19064677
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