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Multisite Evaluation of Next-Generation Methods for Small RNA Quantification.
Herbert ZT, Thimmapuram J, Xie S, Kershner JP, Kolling FW, Ringelberg CS, LeClerc A, Alekseyev YO, Fan J, Podnar JW, Stevenson HS, Sommerville G, Gupta S, Berkeley M, Koeman J, Perera A, Scott AR, Grenier JK, Malik J, Ashton JM, Pivarski KL, Wang X, Kuffel G, Mesa TE, Smith AT, Shen J, Takata Y, Volkert TL, Love JA, Zhang Y, Wang J, Xuei X, Adams M, Levine SS. Herbert ZT, et al. Among authors: alekseyev yo. J Biomol Tech. 2020 Jul;31(2):47-56. doi: 10.7171/jbt.20-3102-001. J Biomol Tech. 2020. PMID: 31966025 Free PMC article.
Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data.
Campbell JD, Liu G, Luo L, Xiao J, Gerrein J, Juan-Guardela B, Tedrow J, Alekseyev YO, Yang IV, Correll M, Geraci M, Quackenbush J, Sciurba F, Schwartz DA, Kaminski N, Johnson WE, Monti S, Spira A, Beane J, Lenburg ME. Campbell JD, et al. Among authors: alekseyev yo. RNA. 2015 Feb;21(2):164-71. doi: 10.1261/rna.046060.114. Epub 2014 Dec 17. RNA. 2015. PMID: 25519487 Free PMC article.
Evaluation of commercially available RNA amplification kits for RNA sequencing using very low input amounts of total RNA.
Shanker S, Paulson A, Edenberg HJ, Peak A, Perera A, Alekseyev YO, Beckloff N, Bivens NJ, Donnelly R, Gillaspy AF, Grove D, Gu W, Jafari N, Kerley-Hamilton JS, Lyons RH, Tepper C, Nicolet CM. Shanker S, et al. Among authors: alekseyev yo. J Biomol Tech. 2015 Apr;26(1):4-18. doi: 10.7171/jbt.15-2601-001. J Biomol Tech. 2015. PMID: 25649271 Free PMC article.
Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.
Herbert ZT, Kershner JP, Butty VL, Thimmapuram J, Choudhari S, Alekseyev YO, Fan J, Podnar JW, Wilcox E, Gipson J, Gillaspy A, Jepsen K, BonDurant SS, Morris K, Berkeley M, LeClerc A, Simpson SD, Sommerville G, Grimmett L, Adams M, Levine SS. Herbert ZT, et al. Among authors: alekseyev yo. BMC Genomics. 2018 Mar 15;19(1):199. doi: 10.1186/s12864-018-4585-1. BMC Genomics. 2018. PMID: 29703133 Free PMC article.
Cross-Site Evaluation of Commercial Sanger Sequencing Chemistries.
Podnar JW, Pantano L, Zeller MJ, Kolling FW, Zhang Y, Alekseyev YO, Niece J, Deiderick H, Fan J, Xuei X, Kieleczawa J, Levine SS, Herbert ZT, Adams M. Podnar JW, et al. Among authors: alekseyev yo. J Biomol Tech. 2020 Sep;31(3):88-93. doi: 10.7171/jbt.20-3103-002. J Biomol Tech. 2020. PMID: 32831655 Free PMC article.
Systematic dissection, preservation, and multiomics in whole human and bovine hearts.
Moreira JD, Gower AC, Xue L, Alekseyev Y, Smith KK, Choi SH, Ayalon N, Farb MG, Tenan K, LeClerc A, Levy D, Benjamin EJ, Lenburg ME, Mitchell RN, Padera RF, Fetterman JL, Gopal DM. Moreira JD, et al. Cardiovasc Pathol. 2023 Mar-Apr;63:107495. doi: 10.1016/j.carpath.2022.107495. Epub 2022 Nov 2. Cardiovasc Pathol. 2023. PMID: 36334690 Free PMC article.
Impact of acute exposure to cigarette smoke on airway gene expression.
Billatos E, Faiz A, Gesthalter Y, LeClerc A, Alekseyev YO, Xiao X, Liu G, Ten Hacken NHT, Heijink IH, Timens W, Brandsma CA, Postma DS, van den Berge M, Spira A, Lenburg ME. Billatos E, et al. Among authors: alekseyev yo. Physiol Genomics. 2018 Sep 1;50(9):705-713. doi: 10.1152/physiolgenomics.00092.2017. Epub 2018 Jun 22. Physiol Genomics. 2018. PMID: 29932825 Free PMC article.
A Next-Generation Sequencing Primer-How Does It Work and What Can It Do?
Alekseyev YO, Fazeli R, Yang S, Basran R, Maher T, Miller NS, Remick D. Alekseyev YO, et al. Acad Pathol. 2018 May 6;5:2374289518766521. doi: 10.1177/2374289518766521. eCollection 2018 Jan-Dec. Acad Pathol. 2018. PMID: 29761157 Free PMC article. Review.
41 results