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MGclus: network clustering employing shared neighbors.
Frings O, Alexeyenko A, Sonnhammer EL. Frings O, et al. Among authors: alexeyenko a. Mol Biosyst. 2013 Jul;9(7):1670-5. doi: 10.1039/c3mb25473a. Epub 2013 Feb 11. Mol Biosyst. 2013. PMID: 23396516
The Norway spruce genome sequence and conifer genome evolution.
Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S. Nystedt B, et al. Among authors: alexeyenko a. Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22. Nature. 2013. PMID: 23698360
Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis.
Merid SK, Goranskaya D, Alexeyenko A. Merid SK, et al. Among authors: alexeyenko a. BMC Bioinformatics. 2014 Sep 19;15(1):308. doi: 10.1186/1471-2105-15-308. BMC Bioinformatics. 2014. PMID: 25236784 Free PMC article.
BACKGROUND: In somatic cancer genomes, delineating genuine driver mutations against a background of multiple passenger events is a challenging task. ...Finally, we summarized seemingly disparate mutations and discovered a functional network of collagen modifi …
BACKGROUND: In somatic cancer genomes, delineating genuine driver mutations against a background of multiple passenger events is a
38 results