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38 results
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Statistical assessment of crosstalk enrichment between gene groups in biological networks.
McCormack T, Frings O, Alexeyenko A, Sonnhammer EL. McCormack T, et al. Among authors: alexeyenko a. PLoS One. 2013;8(1):e54945. doi: 10.1371/journal.pone.0054945. Epub 2013 Jan 23. PLoS One. 2013. PMID: 23372799 Free PMC article.
Global networks of functional coupling in eukaryotes from comprehensive data integration.
Alexeyenko A, Sonnhammer EL. Alexeyenko A, et al. Genome Res. 2009 Jun;19(6):1107-16. doi: 10.1101/gr.087528.108. Epub 2009 Feb 25. Genome Res. 2009. PMID: 19246318 Free PMC article.
Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity.
Alexeyenko A, Wassenberg DM, Lobenhofer EK, Yen J, Linney E, Sonnhammer EL, Meyer JN. Alexeyenko A, et al. PLoS One. 2010 May 5;5(5):e10465. doi: 10.1371/journal.pone.0010465. PLoS One. 2010. PMID: 20463971 Free PMC article.
Genome-wide pathway analysis implicates intracellular transmembrane protein transport in Alzheimer disease.
Hong MG, Alexeyenko A, Lambert JC, Amouyel P, Prince JA. Hong MG, et al. Among authors: alexeyenko a. J Hum Genet. 2010 Oct;55(10):707-9. doi: 10.1038/jhg.2010.92. Epub 2010 Jul 29. J Hum Genet. 2010. PMID: 20668461
Comparative interactomics with Funcoup 2.0.
Alexeyenko A, Schmitt T, Tjärnberg A, Guala D, Frings O, Sonnhammer EL. Alexeyenko A, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D821-8. doi: 10.1093/nar/gkr1062. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110034 Free PMC article.
Network enrichment analysis: extension of gene-set enrichment analysis to gene networks.
Alexeyenko A, Lee W, Pernemalm M, Guegan J, Dessen P, Lazar V, Lehtiö J, Pawitan Y. Alexeyenko A, et al. BMC Bioinformatics. 2012 Sep 11;13:226. doi: 10.1186/1471-2105-13-226. BMC Bioinformatics. 2012. PMID: 22966941 Free PMC article.
Novel genes and pathways modulated by syndecan-1: implications for the proliferation and cell-cycle regulation of malignant mesothelioma cells.
Szatmári T, Mundt F, Heidari-Hamedani G, Zong F, Ferolla E, Alexeyenko A, Hjerpe A, Dobra K. Szatmári T, et al. Among authors: alexeyenko a. PLoS One. 2012;7(10):e48091. doi: 10.1371/journal.pone.0048091. Epub 2012 Oct 29. PLoS One. 2012. PMID: 23144729 Free PMC article.
Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines.
Akan P, Alexeyenko A, Costea PI, Hedberg L, Solnestam BW, Lundin S, Hällman J, Lundberg E, Uhlén M, Lundeberg J. Akan P, et al. Among authors: alexeyenko a. Genome Med. 2012 Nov 18;4(11):86. doi: 10.1186/gm387. eCollection 2012. Genome Med. 2012. PMID: 23158748 Free PMC article.
Network analysis of functional genomics data: application to avian sex-biased gene expression.
Frings O, Mank JE, Alexeyenko A, Sonnhammer EL. Frings O, et al. Among authors: alexeyenko a. ScientificWorldJournal. 2012;2012:130491. doi: 10.1100/2012/130491. Epub 2012 Dec 23. ScientificWorldJournal. 2012. PMID: 23319882 Free PMC article.
MGclus: network clustering employing shared neighbors.
Frings O, Alexeyenko A, Sonnhammer EL. Frings O, et al. Among authors: alexeyenko a. Mol Biosyst. 2013 Jul;9(7):1670-5. doi: 10.1039/c3mb25473a. Epub 2013 Feb 11. Mol Biosyst. 2013. PMID: 23396516
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