Alfaro JA - Search Results

1

The emerging landscape of single-molecule protein sequencing technologies.

Alfaro JA, Bohländer P, Dai M, Filius M, Howard CJ, van Kooten XF, Ohayon S, Pomorski A, Schmid S, Aksimentiev A, Anslyn EV, Bedran G, Cao C, Chinappi M, Coyaud E, Dekker C, Dittmar G, Drachman N, Eelkema R, Goodlett D, Hentz S, Kalathiya U, Kelleher NL, Kelly RT, Kelman Z, Kim SH, Kuster B, Rodriguez-Larrea D, Lindsay S, Maglia G, Marcotte EM, Marino JP, Masselon C, Mayer M, Samaras P, Sarthak K, Sepiashvili L, Stein D, Wanunu M, Wilhelm M, Yin P, Meller A, Joo C. Alfaro JA, et al. Nat Methods. 2021 Jun;18(6):604-617. doi: 10.1038/s41592-021-01143-1. Epub 2021 Jun 7. Nat Methods. 2021. PMID: 34099939 Free PMC article. Review.

2

Onco-proteogenomics: cancer proteomics joins forces with genomics.

Alfaro JA, Sinha A, Kislinger T, Boutros PC. Alfaro JA, et al. Nat Methods. 2014 Nov;11(11):1107-13. doi: 10.1038/nmeth.3138. Nat Methods. 2014. PMID: 25357240

3

Insights into the Effects of Cancer Associated Mutations at the UPF2 and ATP-Binding Sites of NMD Master Regulator: UPF1.

Kalathiya U, Padariya M, Pawlicka K, Verma CS, Houston D, Hupp TR, Alfaro JA. Kalathiya U, et al. Among authors: alfaro ja. Int J Mol Sci. 2019 Nov 11;20(22):5644. doi: 10.3390/ijms20225644. Int J Mol Sci. 2019. PMID: 31718065 Free PMC article.

4

Mass Spectrometry-Based Identification of MHC-Associated Peptides.

Kote S, Pirog A, Bedran G, Alfaro J, Dapic I. Kote S, et al. Cancers (Basel). 2020 Feb 26;12(3):535. doi: 10.3390/cancers12030535. Cancers (Basel). 2020. PMID: 32110973 Free PMC article. Review.

5

Nonsense-Mediated mRNA Decay: Pathologies and the Potential for Novel Therapeutics.

Pawlicka K, Kalathiya U, Alfaro J. Pawlicka K, et al. Cancers (Basel). 2020 Mar 24;12(3):765. doi: 10.3390/cancers12030765. Cancers (Basel). 2020. PMID: 32213869 Free PMC article. Review.

6

Recognition Dynamics of Cancer Mutations on the ERp57-Tapasin Interface.

Padariya M, Kalathiya U, Houston DR, Alfaro JA. Padariya M, et al. Among authors: alfaro ja. Cancers (Basel). 2020 Mar 20;12(3):737. doi: 10.3390/cancers12030737. Cancers (Basel). 2020. PMID: 32244998 Free PMC article.

7

MicroPOTS Analysis of Barrett's Esophageal Cell Line Models Identifies Proteomic Changes after Physiologic and Radiation Stress.

Weke K, Singh A, Uwugiaren N, Alfaro JA, Wang T, Hupp TR, O'Neill JR, Vojtesek B, Goodlett DR, Williams SM, Zhou M, Kelly RT, Zhu Y, Dapic I. Weke K, et al. Among authors: alfaro ja. J Proteome Res. 2021 May 7;20(5):2195-2205. doi: 10.1021/acs.jproteome.0c00629. Epub 2021 Jan 25. J Proteome Res. 2021. PMID: 33491460 Free PMC article.

8

Interfaces with Structure Dynamics of the Workhorses from Cells Revealed through Cross-Linking Mass Spectrometry (CLMS).

Kalathiya U, Padariya M, Faktor J, Coyaud E, Alfaro JA, Fahraeus R, Hupp TR, Goodlett DR. Kalathiya U, et al. Among authors: alfaro ja. Biomolecules. 2021 Mar 4;11(3):382. doi: 10.3390/biom11030382. Biomolecules. 2021. PMID: 33806612 Free PMC article. Review.

9

Sampling the proteome by emerging single-molecule and mass spectrometry methods.

MacCoss MJ, Alfaro JA, Faivre DA, Wu CC, Wanunu M, Slavov N. MacCoss MJ, et al. Among authors: alfaro ja. Nat Methods. 2023 Mar;20(3):339-346. doi: 10.1038/s41592-023-01802-5. Nat Methods. 2023. PMID: 36899164 Free PMC article.

10

The Immunopeptidome from a Genomic Perspective: Establishing the Noncanonical Landscape of MHC Class I-Associated Peptides.

Bedran G, Gasser HC, Weke K, Wang T, Bedran D, Laird A, Battail C, Zanzotto FM, Pesquita C, Axelson H, Rajan A, Harrison DJ, Palkowski A, Pawlik M, Parys M, O'Neill JR, Brennan PM, Symeonides SN, Goodlett DR, Litchfield K, Fahraeus R, Hupp TR, Kote S, Alfaro JA. Bedran G, et al. Among authors: alfaro ja. Cancer Immunol Res. 2023 Jun 2;11(6):747-762. doi: 10.1158/2326-6066.CIR-22-0621. Cancer Immunol Res. 2023. PMID: 36961404 Free PMC article.

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