Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

My NCBI Filters
Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2006 1
2012 1
2013 1
2014 1
2015 1
2016 1
2017 1
2020 1
2021 0
Text availability
Article attribute
Article type
Publication date

Search Results

8 results
Results by year

Citations

1 article found by citation matching

Search results

Filters applied: . Clear all
Page 1
Algorithmic approaches for identification of RNA editing sites.
Levanon EY, Eisenberg E. Levanon EY, et al. Brief Funct Genomic Proteomic. 2006 Mar;5(1):43-5. doi: 10.1093/bfgp/ell014. Epub 2006 Feb 22. Brief Funct Genomic Proteomic. 2006. PMID: 16769677 Review.
Recently a number of groups have introduced computational methods for the detection of A-to-I RNA editing sites. These approaches have resulted in finding thousands of editing sites within the genomic repeats, as well as a few novel genet …
Recently a number of groups have introduced computational methods for the detection of A-to-I RNA editing sites. These …
Accurate detection for a wide range of mutation and editing sites of microRNAs from small RNA high-throughput sequencing profiles.
Zheng Y, Ji B, Song R, Wang S, Li T, Zhang X, Chen K, Li T, Li J. Zheng Y, et al. Nucleic Acids Res. 2016 Aug 19;44(14):e123. doi: 10.1093/nar/gkw471. Epub 2016 May 26. Nucleic Acids Res. 2016. PMID: 27229138 Free PMC article.
From 70 sRNA HTS profiles with over 1.3 billion reads, MiRME has detected thousands of statistically significant M/E sites, including 3'-editing sites, 57 A-to-I editing sites (of which 32 are novel), as well as some putative non-canonical ed
From 70 sRNA HTS profiles with over 1.3 billion reads, MiRME has detected thousands of statistically significant M/E sites, including …
Bivartect: accurate and memory-saving breakpoint detection by direct read comparison.
Shimmura K, Kato Y, Kawahara Y. Shimmura K, et al. Bioinformatics. 2020 May 1;36(9):2725-2730. doi: 10.1093/bioinformatics/btaa059. Bioinformatics. 2020. PMID: 31985791 Free PMC article.
MOTIVATION: Genetic variant calling with high-throughput sequencing data has been recognized as a useful tool for better understanding of disease mechanism and detection of potential off-target sites in genome editing. Since most of the variant calling algorithms
MOTIVATION: Genetic variant calling with high-throughput sequencing data has been recognized as a useful tool for better understanding of di …
Systematic identification of edited microRNAs in the human brain.
Alon S, Mor E, Vigneault F, Church GM, Locatelli F, Galeano F, Gallo A, Shomron N, Eisenberg E. Alon S, et al. Genome Res. 2012 Aug;22(8):1533-40. doi: 10.1101/gr.131573.111. Epub 2012 Apr 12. Genome Res. 2012. PMID: 22499667 Free PMC article.
Our algorithm successfully identified many of the known editing sites in mature miRNAs and revealed 17 novel human sites, 12 of which are in the recognition sites of the miRNAs. We confirmed most of the editing events using in vitro ADAR …
Our algorithm successfully identified many of the known editing sites in mature miRNAs and revealed 17 novel human s
RNA-eXpress annotates novel transcript features in RNA-seq data.
Forster SC, Finkel AM, Gould JA, Hertzog PJ. Forster SC, et al. Bioinformatics. 2013 Mar 15;29(6):810-2. doi: 10.1093/bioinformatics/btt034. Epub 2013 Feb 8. Bioinformatics. 2013. PMID: 23396121 Free PMC article.
Biologically relevant transcribed features also include large and small non-coding RNA, new transcription start sites, alternative promoters, RNA editing and processing of coding transcripts. ...The framework is designed to be easily accessible while a …
Biologically relevant transcribed features also include large and small non-coding RNA, new transcription start sites, alterna …
GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
Zhu LJ, Lawrence M, Gupta A, Pagès H, Kucukural A, Garber M, Wolfe SA. Zhu LJ, et al. BMC Genomics. 2017 May 15;18(1):379. doi: 10.1186/s12864-017-3746-y. BMC Genomics. 2017. PMID: 28506212 Free PMC article.
In the context of their therapeutic application, it is important to identify the spectrum of genomic sequences that are cleaved by a candidate nuclease when programmed with a particular guide RNA, as well as the cleavage efficiency of these sites. Powerful new exper …
In the context of their therapeutic application, it is important to identify the spectrum of genomic sequences that are cleaved by a candida …
Genome-wide profiling of the C. elegans dsRNAome.
Whipple JM, Youssef OA, Aruscavage PJ, Nix DA, Hong C, Johnson WE, Bass BL. Whipple JM, et al. RNA. 2015 May;21(5):786-800. doi: 10.1261/rna.048801.114. Epub 2015 Mar 24. RNA. 2015. PMID: 25805852 Free PMC article.
To identify dsRNAs expressed in Caenorhabditis elegans, we developed a bioinformatics pipeline that identifies dsRNA by detecting clustered RNA editing sites, which are strictly limited to long dsRNA substrates of Adenosine Deaminases that act on RNA ( …
To identify dsRNAs expressed in Caenorhabditis elegans, we developed a bioinformatics pipeline that identifies dsRNA by detecting clustered …
Biotechnological applications of mobile group II introns and their reverse transcriptases: gene targeting, RNA-seq, and non-coding RNA analysis.
Enyeart PJ, Mohr G, Ellington AD, Lambowitz AM. Enyeart PJ, et al. Mob DNA. 2014 Jan 13;5(1):2. doi: 10.1186/1759-8753-5-2. Mob DNA. 2014. PMID: 24410776 Free PMC article.
They recognize DNA target sites largely by base pairing of sequences within the intron RNA and achieve high DNA target specificity by using the ribozyme active site to couple correct base pairing to RNA-catalyzed intron integration. Algorithms h …
They recognize DNA target sites largely by base pairing of sequences within the intron RNA and achieve high DNA target specifi …