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Effects of environment, genetics and data analysis pitfalls in an esophageal cancer genome-wide association study.
Statnikov A, Li C, Aliferis CF. Statnikov A, et al. Among authors: aliferis cf. PLoS One. 2007 Sep 26;2(9):e958. doi: 10.1371/journal.pone.0000958. PLoS One. 2007. PMID: 17895998 Free PMC article.
Expanding the understanding of biases in development of clinical-grade molecular signatures: a case study in acute respiratory viral infections.
Lytkin NI, McVoy L, Weitkamp JH, Aliferis CF, Statnikov A. Lytkin NI, et al. Among authors: aliferis cf. PLoS One. 2011;6(6):e20662. doi: 10.1371/journal.pone.0020662. Epub 2011 Jun 1. PLoS One. 2011. PMID: 21673802 Free PMC article.
The FAST-AIMS Clinical Mass Spectrometry Analysis System.
Fananapazir N, Statnikov A, Aliferis CF. Fananapazir N, et al. Among authors: aliferis cf. Adv Bioinformatics. 2009;2009:598241. doi: 10.1155/2009/598241. Epub 2009 Jul 9. Adv Bioinformatics. 2009. PMID: 19956420 Free PMC article.
Challenges in the analysis of mass-throughput data: a technical commentary from the statistical machine learning perspective.
Aliferis CF, Statnikov A, Tsamardinos I. Aliferis CF, et al. Cancer Inform. 2007 Feb 16;2:133-62. Cancer Inform. 2007. PMID: 19458765 Free PMC article.
GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data.
Statnikov A, Tsamardinos I, Dosbayev Y, Aliferis CF. Statnikov A, et al. Among authors: aliferis cf. Int J Med Inform. 2005 Aug;74(7-8):491-503. doi: 10.1016/j.ijmedinf.2005.05.002. Int J Med Inform. 2005. PMID: 15967710
A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.
Statnikov A, Aliferis CF, Tsamardinos I, Hardin D, Levy S. Statnikov A, et al. Among authors: aliferis cf. Bioinformatics. 2005 Mar 1;21(5):631-43. doi: 10.1093/bioinformatics/bti033. Epub 2004 Sep 16. Bioinformatics. 2005. PMID: 15374862
Methods for multi-category cancer diagnosis from gene expression data: a comprehensive evaluation to inform decision support system development.
Statnikov A, Aliferis CF, Tsamardinos I. Statnikov A, et al. Among authors: aliferis cf. Stud Health Technol Inform. 2004;107(Pt 2):813-7. Stud Health Technol Inform. 2004. PMID: 15360925
Causal graph-based analysis of genome-wide association data in rheumatoid arthritis.
Alekseyenko AV, Lytkin NI, Ai J, Ding B, Padyukov L, Aliferis CF, Statnikov A. Alekseyenko AV, et al. Among authors: aliferis cf. Biol Direct. 2011 May 18;6:25. doi: 10.1186/1745-6150-6-25. Biol Direct. 2011. PMID: 21592391 Free PMC article.
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification.
Statnikov A, Wang L, Aliferis CF. Statnikov A, et al. Among authors: aliferis cf. BMC Bioinformatics. 2008 Jul 22;9:319. doi: 10.1186/1471-2105-9-319. BMC Bioinformatics. 2008. PMID: 18647401 Free PMC article.
Factors influencing the statistical power of complex data analysis protocols for molecular signature development from microarray data.
Aliferis CF, Statnikov A, Tsamardinos I, Schildcrout JS, Shepherd BE, Harrell FE Jr. Aliferis CF, et al. PLoS One. 2009;4(3):e4922. doi: 10.1371/journal.pone.0004922. Epub 2009 Mar 17. PLoS One. 2009. PMID: 19290050 Free PMC article.
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