Alkan C - Search Results

1

Firtina C, Alkan C. Firtina C, et al. Among authors: alkan c. Bioinformatics. 2016 Aug 1;32(15):2243-7. doi: 10.1093/bioinformatics/btw139. Epub 2016 Mar 11. Bioinformatics. 2016. PMID: 27153582

2

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.

Hajirasouliha I, Hormozdiari F, Alkan C, Kidd JM, Birol I, Eichler EE, Sahinalp SC. Hajirasouliha I, et al. Among authors: alkan c. Bioinformatics. 2010 May 15;26(10):1277-83. doi: 10.1093/bioinformatics/btq152. Epub 2010 Apr 12. Bioinformatics. 2010. PMID: 20385726 Free PMC article.

3

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.

Hormozdiari F, Hajirasouliha I, Dao P, Hach F, Yorukoglu D, Alkan C, Eichler EE, Sahinalp SC. Hormozdiari F, et al. Among authors: alkan c. Bioinformatics. 2010 Jun 15;26(12):i350-7. doi: 10.1093/bioinformatics/btq216. Bioinformatics. 2010. PMID: 20529927 Free PMC article.

4

Sensitive and fast mapping of di-base encoded reads.

Hormozdiari F, Hach F, Sahinalp SC, Eichler EE, Alkan C. Hormozdiari F, et al. Among authors: alkan c. Bioinformatics. 2011 Jul 15;27(14):1915-21. doi: 10.1093/bioinformatics/btr303. Epub 2011 May 17. Bioinformatics. 2011. PMID: 21586516 Free PMC article.

5

SCALCE: boosting sequence compression algorithms using locally consistent encoding.

Hach F, Numanagic I, Alkan C, Sahinalp SC. Hach F, et al. Among authors: alkan c. Bioinformatics. 2012 Dec 1;28(23):3051-7. doi: 10.1093/bioinformatics/bts593. Epub 2012 Oct 9. Bioinformatics. 2012. PMID: 23047557 Free PMC article.

6

Accelerating read mapping with FastHASH.

Xin H, Lee D, Hormozdiari F, Yedkar S, Mutlu O, Alkan C. Xin H, et al. Among authors: alkan c. BMC Genomics. 2013;14 Suppl 1(Suppl 1):S13. doi: 10.1186/1471-2164-14-S1-S13. Epub 2013 Jan 21. BMC Genomics. 2013. PMID: 23369189 Free PMC article.

7

Early postzygotic mutations contribute to de novo variation in a healthy monozygotic twin pair.

Dal GM, Ergüner B, Sağıroğlu MS, Yüksel B, Onat OE, Alkan C, Özçelik T. Dal GM, et al. Among authors: alkan c. J Med Genet. 2014 Jul;51(7):455-9. doi: 10.1136/jmedgenet-2013-102197. Epub 2014 Apr 24. J Med Genet. 2014. PMID: 24764354

8

mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.

Hach F, Sarrafi I, Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC. Hach F, et al. Among authors: alkan c. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W494-500. doi: 10.1093/nar/gku370. Epub 2014 May 8. Nucleic Acids Res. 2014. PMID: 24810850 Free PMC article.

9

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication.

Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, Marques-Bonet T, Alkan C, Thomas GW, Hahn MW, Menotti-Raymond M, O'Brien SJ, Wilson RK, Lyons LA, Murphy WJ, Warren WC. Montague MJ, et al. Among authors: alkan c. Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17230-5. doi: 10.1073/pnas.1410083111. Epub 2014 Nov 10. Proc Natl Acad Sci U S A. 2014. PMID: 25385592 Free PMC article.

10

Fast and accurate mapping of Complete Genomics reads.

Lee D, Hormozdiari F, Xin H, Hach F, Mutlu O, Alkan C. Lee D, et al. Among authors: alkan c. Methods. 2015 Jun;79-80:3-10. doi: 10.1016/j.ymeth.2014.10.012. Epub 2014 Oct 22. Methods. 2015. PMID: 25461772 Free PMC article.

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