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Metadata matters: access to image data in the real world.
Linkert M, Rueden CT, Allan C, Burel JM, Moore W, Patterson A, Loranger B, Moore J, Neves C, Macdonald D, Tarkowska A, Sticco C, Hill E, Rossner M, Eliceiri KW, Swedlow JR. Linkert M, et al. Among authors: allan c. J Cell Biol. 2010 May 31;189(5):777-82. doi: 10.1083/jcb.201004104. J Cell Biol. 2010. PMID: 20513764 Free PMC article.
OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.
Moore J, Allan C, Besson S, Burel JM, Diel E, Gault D, Kozlowski K, Lindner D, Linkert M, Manz T, Moore W, Pape C, Tischer C, Swedlow JR. Moore J, et al. Among authors: allan c. Nat Methods. 2021 Dec;18(12):1496-1498. doi: 10.1038/s41592-021-01326-w. Epub 2021 Nov 29. Nat Methods. 2021. PMID: 34845388 Free PMC article.
OMERO: flexible, model-driven data management for experimental biology.
Allan C, Burel JM, Moore J, Blackburn C, Linkert M, Loynton S, Macdonald D, Moore WJ, Neves C, Patterson A, Porter M, Tarkowska A, Loranger B, Avondo J, Lagerstedt I, Lianas L, Leo S, Hands K, Hay RT, Patwardhan A, Best C, Kleywegt GJ, Zanetti G, Swedlow JR. Allan C, et al. Nat Methods. 2012 Feb 28;9(3):245-53. doi: 10.1038/nmeth.1896. Nat Methods. 2012. PMID: 22373911 Free PMC article.
Publishing and sharing multi-dimensional image data with OMERO.
Burel JM, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Li S, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Tarkowska A, Walczysko P, Allan C, Moore J, Swedlow JR. Burel JM, et al. Among authors: allan c. Mamm Genome. 2015 Oct;26(9-10):441-7. doi: 10.1007/s00335-015-9587-6. Epub 2015 Jul 30. Mamm Genome. 2015. PMID: 26223880 Free PMC article.
Metadata management for high content screening in OMERO.
Li S, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Rustici G, Tarkowska A, Walczysko P, Williams E, Allan C, Burel JM, Moore J, Swedlow JR. Li S, et al. Among authors: allan c. Methods. 2016 Mar 1;96:27-32. doi: 10.1016/j.ymeth.2015.10.006. Epub 2015 Oct 22. Methods. 2016. PMID: 26476368 Free PMC article.
Bringing Open Data to Whole Slide Imaging.
Besson S, Leigh R, Linkert M, Allan C, Burel JM, Carroll M, Gault D, Gozim R, Li S, Lindner D, Moore J, Moore W, Walczysko P, Wong F, Swedlow JR. Besson S, et al. Among authors: allan c. Digit Pathol (2019). 2019 Apr;2019:3-10. doi: 10.1007/978-3-030-23937-4_1. Epub 2019 Jul 3. Digit Pathol (2019). 2019. PMID: 31579322 Free PMC article.
514 results