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Phosphorothioate DNA modification by BREX type 4 systems in the human gut microbiome.
Yuan Y, DeMott MS, Byrne SR, Flores K, Poyet M, Groussin M, Berdy B, Bahunde JR, Girard C, Lehtimäki J, Mabulla AZP, Mwikarago IE, Nartey YA, Nguyen LTT, Onyekwere CA, Roberts LR, Shapiro BJ, Vatanen T, Comstock LE, Alm EJ, Dedon PC. Yuan Y, et al. Among authors: alm ej. Nat Commun. 2026 Jan 22. doi: 10.1038/s41467-026-68412-5. Online ahead of print. Nat Commun. 2026. PMID: 41571653 Free article.
From structured surveys to outbreak investigations: advancing genomic surveillance of carbapenem-resistant Enterobacterales within the European Antimicrobial Resistance Genes Surveillance Network.
Kohlenberg A, Linkevicius M, Alm E, Robesyn E, Svartström O, Palm D, Monnet DL, Plachouras D, Albiger B. Kohlenberg A, et al. Among authors: alm e. Front Public Health. 2025 Nov 18;13:1671769. doi: 10.3389/fpubh.2025.1671769. eCollection 2025. Front Public Health. 2025. PMID: 41341433 Free PMC article.
Industrialization drives convergent microbial and physiological shifts in the human metaorganism.
Poyet M, Rühlemann M, Schaan AP, Ma Y, Moitinho-Silva L, Wacker EM, Jebens H, Patel L, Nguyen LTT, Zimmer A, Plichta D, McDonald D, Stevens C, Agyei A, Afihene MY, Asibey SO, Awuku YA, Badiane AS, Ching LS, Corzett C, Deme A, Dominguez-Rodrigo M, Duah A, Fezeu A, Froment A, Gibbons S, Girard C, Hooker J, Ibrahim F, Iqaluk D, Juimo V, Kettunen P, Lafosse S, Lango-Yaya E, Lehtimäki J, Lim YAL, Mabulla A, Mahachai V, Mohamed RS, Moniz K, Mwikarago IE, Nartey YA, Ndiaye D, Noel M, Onyekwere C, Pin TM, Plymoth A, Roberts L, Ruokolainen L, Rusine J, Segurel L, Shapiro BJ, Sigwazi S, Sistiaga A, Valles K, Vatanen T, Vilaichone RK, Rosenstiel P, Baines J, Franke A, Ellinghaus D, Knight R, Daly M, Xavier RJ, Alm EJ, Groussin M. Poyet M, et al. Among authors: alm ej. bioRxiv [Preprint]. 2025 Oct 20:2025.10.20.683358. doi: 10.1101/2025.10.20.683358. bioRxiv. 2025. PMID: 41280098 Free PMC article. Preprint.
Convergent genomic responses of human gut bacteria to variations in industrialization.
Rühlemann M, Szánthó LL, Waschina S, Moitinho-Silva L, Mews LK, Camarena JF, Jebens H, Costa J, Juimo V, Fezeu A, Agyei A, Afihene MY, Asibey SO, Awuku YA, Duah A, Nartey YA, Ibrahim F, Lim YAL, Pin TM, Onyekwere C, Rusine J, Mwikarago IE, Baines J, Franke A, Szöllősi GJ, Xavier R, Alm EJ, Groussin M, Poyet M. Rühlemann M, et al. Among authors: alm ej. bioRxiv [Preprint]. 2025 Oct 20:2025.10.20.683395. doi: 10.1101/2025.10.20.683395. bioRxiv. 2025. PMID: 41278887 Free PMC article. Preprint.
Host transcriptional responses to gut microbiome variation arising from urbanism.
Arif S, Nirmalan S, Alazizi A, Mair-Meijers H, Agyei A, Afihene MY, Asibey SO, Awuku YA, Duah A, Plymoth A, Nartey Y, Roberts L, Valles K, Ibrahim F, Lim YAL, Pin TM, Onyekwere C, Rusine J, Mwikarago IE, Alm EJ, Poyet M, Groussin M, Luca F, Blekhman R. Arif S, et al. Among authors: alm ej. bioRxiv [Preprint]. 2025 Oct 26:2025.10.26.683539. doi: 10.1101/2025.10.26.683539. bioRxiv. 2025. PMID: 41278623 Free PMC article. Preprint.
Cross-border investigation of a tuberculosis outbreak in Vienna linked to a multi-country cluster among foreign-born individuals, Europe, 2021 to 2025.
Költringer F, Koreny M, Werber D, Heger F, Chalupka A, Schweiger S, Brunner G, Tuch U, Karnthaler U, Klintz SR, Ködmön C, Hoefer A, Anthony R, Kroeger S, Domaszewska T, Boes L, Niemann S, Walz T, Kuhns M, Jackson S, Fitzgibbon M, Mathys V, Sizaire V, Cirillo DM, Schepisi MS, Rønning JO, Herrera-Leon L, Cardona PJ, Gavaldà-Mestre L, Groenheit R, Mansjö M, Szél V, Alm E, Cabal A. Költringer F, et al. Among authors: alm e. Euro Surveill. 2025 Aug;30(33):2500565. doi: 10.2807/1560-7917.ES.2025.30.33.2500565. Euro Surveill. 2025. PMID: 40843522 Free PMC article.
Cross-border spread of a mosaic resistance (OXA-48) and virulence (aerobactin) plasmid in Klebsiella pneumoniae: a European Antimicrobial Resistance Genes Surveillance Network investigation, Europe, February 2019 to October 2024.
Linkevicius M, Alm E, Roer L, Svartström O, Dada-Olorunwa M, Räisänen K, Reichert F, Möller S, Clarke C, Cormican M, Niedre-Otomere B, Vangravs R, Greičius P, Burduniuc O, Anton M, Hendrickx APA, Witteveen S, Müller V, Palm D, Plachouras D, Monnet DL, Hasman H, Kohlenberg A. Linkevicius M, et al. Among authors: alm e. Euro Surveill. 2025 Jul;30(27):2500439. doi: 10.2807/1560-7917.ES.2025.30.27.2500439. Euro Surveill. 2025. PMID: 40642770 Free PMC article.
287 results