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Network motifs in the transcriptional regulation network of Escherichia coli.
Shen-Orr SS, Milo R, Mangan S, Alon U. Shen-Orr SS, et al. Nat Genet. 2002 May;31(1):64-8. doi: 10.1038/ng881. Epub 2002 Apr 22. Nat Genet. 2002. PMID: 11967538
Response regulator output in bacterial chemotaxis.
Alon U, Camarena L, Surette MG, Aguera y Arcas B, Liu Y, Leibler S, Stock JB. Alon U, et al. EMBO J. 1998 Aug 3;17(15):4238-48. doi: 10.1093/emboj/17.15.4238. EMBO J. 1998. PMID: 9687492 Free PMC article.
Robustness in bacterial chemotaxis.
Alon U, Surette MG, Barkai N, Leibler S. Alon U, et al. Nature. 1999 Jan 14;397(6715):168-71. doi: 10.1038/16483. Nature. 1999. PMID: 9923680
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.
Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, Levine AJ. Alon U, et al. Proc Natl Acad Sci U S A. 1999 Jun 8;96(12):6745-50. doi: 10.1073/pnas.96.12.6745. Proc Natl Acad Sci U S A. 1999. PMID: 10359783 Free PMC article.
Computerized analysis of chemotaxis at different stages of bacterial growth.
Staropoli JF, Alon U. Staropoli JF, et al. Biophys J. 2000 Jan;78(1):513-9. doi: 10.1016/S0006-3495(00)76613-6. Biophys J. 2000. PMID: 10620314 Free PMC article.
Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics.
Ronen M, Rosenberg R, Shraiman BI, Alon U. Ronen M, et al. Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10555-60. doi: 10.1073/pnas.152046799. Epub 2002 Jul 26. Proc Natl Acad Sci U S A. 2002. PMID: 12145321 Free PMC article.
Network motifs: simple building blocks of complex networks.
Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U. Milo R, et al. Science. 2002 Oct 25;298(5594):824-7. doi: 10.1126/science.298.5594.824. Science. 2002. PMID: 12399590
Negative autoregulation speeds the response times of transcription networks.
Rosenfeld N, Elowitz MB, Alon U. Rosenfeld N, et al. J Mol Biol. 2002 Nov 8;323(5):785-93. doi: 10.1016/s0022-2836(02)00994-4. J Mol Biol. 2002. PMID: 12417193
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