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Page 1
Autophagy machinery as exploited by viruses.
Münz C, Campbell GR, Esclatine A, Faure M, Labonte P, Lussignol M, Orvedahl A, Altan-Bonnet N, Bartenschlager R, Beale R, Cirone M, Espert L, Jung J, Leib D, Reggiori F, Sanyal S, Spector SA, Thiel V, Viret C, Wei Y, Wileman T, Wodrich H. Münz C, et al. Among authors: altan bonnet n. Autophagy Rep. 2025 Mar 18;4(1):2464986. doi: 10.1080/27694127.2025.2464986. eCollection 2025 Dec 31. Autophagy Rep. 2025. PMID: 40201908 Free PMC article.
Nonlytic Egress and Transmission in the Virus World.
Altan-Bonnet N, Panigrahi M. Altan-Bonnet N, et al. Annu Rev Biochem. 2025 Jun;94(1):531-560. doi: 10.1146/annurev-biochem-052521-120140. Annu Rev Biochem. 2025. PMID: 40540754 Free article. Review.
Minimal information for studies of extracellular vesicles (MISEV2023): From basic to advanced approaches.
Welsh JA, Goberdhan DCI, O'Driscoll L, Buzas EI, Blenkiron C, Bussolati B, Cai H, Di Vizio D, Driedonks TAP, Erdbrügger U, Falcon-Perez JM, Fu QL, Hill AF, Lenassi M, Lim SK, Mahoney MG, Mohanty S, Möller A, Nieuwland R, Ochiya T, Sahoo S, Torrecilhas AC, Zheng L, Zijlstra A, Abuelreich S, Bagabas R, Bergese P, Bridges EM, Brucale M, Burger D, Carney RP, Cocucci E, Crescitelli R, Hanser E, Harris AL, Haughey NJ, Hendrix A, Ivanov AR, Jovanovic-Talisman T, Kruh-Garcia NA, Ku'ulei-Lyn Faustino V, Kyburz D, Lässer C, Lennon KM, Lötvall J, Maddox AL, Martens-Uzunova ES, Mizenko RR, Newman LA, Ridolfi A, Rohde E, Rojalin T, Rowland A, Saftics A, Sandau US, Saugstad JA, Shekari F, Swift S, Ter-Ovanesyan D, Tosar JP, Useckaite Z, Valle F, Varga Z, van der Pol E, van Herwijnen MJC, Wauben MHM, Wehman AM, Williams S, Zendrini A, Zimmerman AJ; MISEV Consortium; Théry C, Witwer KW. Welsh JA, et al. J Extracell Vesicles. 2024 Feb;13(2):e12404. doi: 10.1002/jev2.12404. J Extracell Vesicles. 2024. PMID: 38326288 Free PMC article.
Epigenetic repression of antiviral genes by SARS-CoV-2 NSP1.
Anastasakis DG, Benhalevy D, Çuburu N, Altan-Bonnet N, Hafner M. Anastasakis DG, et al. Among authors: altan bonnet n. PLoS One. 2024 Jan 26;19(1):e0297262. doi: 10.1371/journal.pone.0297262. eCollection 2024. PLoS One. 2024. PMID: 38277395 Free PMC article.
Enteric viruses replicate in salivary glands and infect through saliva.
Ghosh S, Kumar M, Santiana M, Mishra A, Zhang M, Labayo H, Chibly AM, Nakamura H, Tanaka T, Henderson W, Lewis E, Voss O, Su Y, Belkaid Y, Chiorini JA, Hoffman MP, Altan-Bonnet N. Ghosh S, et al. Among authors: altan bonnet n. Nature. 2022 Jul;607(7918):345-350. doi: 10.1038/s41586-022-04895-8. Epub 2022 Jun 29. Nature. 2022. PMID: 35768512 Free PMC article.
Enrichment of NPC1-deficient cells with the lipid LBPA stimulates autophagy, improves lysosomal function, and reduces cholesterol storage.
Ilnytska O, Lai K, Gorshkov K, Schultz ML, Tran BN, Jeziorek M, Kunkel TJ, Azaria RD, McLoughlin HS, Waghalter M, Xu Y, Schlame M, Altan-Bonnet N, Zheng W, Lieberman AP, Dobrowolski R, Storch J. Ilnytska O, et al. Among authors: altan bonnet n. J Biol Chem. 2021 Jul;297(1):100813. doi: 10.1016/j.jbc.2021.100813. Epub 2021 May 21. J Biol Chem. 2021. PMID: 34023384 Free PMC article.
Luminal microvesicles uniquely influence translocating bacteria after SIV infection.
Flynn JK, Langner CA, Karmele EP, Baker PJ, Pei L, Gorfu EG, Bochart RM, Santiana M, Smelkinson MG, Nutman TB, Altan-Bonnet N, Bosinger SE, Kelsall BL, Brenchley JM, Ortiz AM. Flynn JK, et al. Among authors: altan bonnet n. Mucosal Immunol. 2021 Jul;14(4):937-948. doi: 10.1038/s41385-021-00393-8. Epub 2021 Mar 17. Mucosal Immunol. 2021. PMID: 33731830 Free PMC article.
Lysobisphosphatidic acid (LBPA) enrichment promotes cholesterol egress via exosomes in Niemann Pick type C1 deficient cells.
Ilnytska O, Jeziorek M, Lai K, Altan-Bonnet N, Dobrowolski R, Storch J. Ilnytska O, et al. Among authors: altan bonnet n. Biochim Biophys Acta Mol Cell Biol Lipids. 2021 Jun;1866(6):158916. doi: 10.1016/j.bbalip.2021.158916. Epub 2021 Mar 12. Biochim Biophys Acta Mol Cell Biol Lipids. 2021. PMID: 33716137 Free PMC article. No abstract available.
Viral pores are everywhere.
Kumar M, Altan-Bonnet N. Kumar M, et al. Among authors: altan bonnet n. Mol Cell. 2021 May 20;81(10):2061-2063. doi: 10.1016/j.molcel.2021.04.025. Mol Cell. 2021. PMID: 34019787 Free article.
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.
Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, Agam G, Agarwal A, Aggarwal BB, Agnello M, Agostinis P, Agrewala JN, Agrotis A, Aguilar PV, Ahmad ST, Ahmed ZM, Ahumada-Castro U, Aits S, Aizawa S, Akkoc Y, Akoumianaki T, Akpinar HA, Al-Abd AM, Al-Akra L, Al-Gharaibeh A, Alaoui-Jamali MA, Alberti S, Alcocer-Gómez E, Alessandri C, Ali M, Alim Al-Bari MA, Aliwaini S, Alizadeh J, Almacellas E, Almasan A, Alonso A, Alonso GD, Altan-Bonnet N, Altieri DC, Álvarez ÉMC, Alves S, Alves da Costa C, Alzaharna MM, Amadio M, Amantini C, Amaral C, Ambrosio S, Amer AO, Ammanathan V, An Z, Andersen SU, Andrabi SA, Andrade-Silva M, Andres AM, Angelini S, Ann D, Anozie UC, Ansari MY, Antas P, Antebi A, Antón Z, Anwar T, Apetoh L, Apostolova N, Araki T, Araki Y, Arasaki K, Araújo WL, Araya J, Arden C, Arévalo MA, Arguelles S, Arias E, Arikkath J, Arimoto H, Ariosa AR, Armstrong-James D, Arnauné-Pelloquin L, Aroca A, Arroyo DS, Arsov I, Artero R, Asaro DML, Aschner M, Ashrafizadeh M, Ashur-Fabian O, Atanasov AG, Au AK, Auberger P, Auner HW, Aurelian L, Au… See abstract for full author list ➔ Klionsky DJ, et al. Among authors: altan bonnet n. Autophagy. 2021 Jan;17(1):1-382. doi: 10.1080/15548627.2020.1797280. Epub 2021 Feb 8. Autophagy. 2021. PMID: 33634751 Free PMC article.
β-Coronaviruses Use Lysosomes for Egress Instead of the Biosynthetic Secretory Pathway.
Ghosh S, Dellibovi-Ragheb TA, Kerviel A, Pak E, Qiu Q, Fisher M, Takvorian PM, Bleck C, Hsu VW, Fehr AR, Perlman S, Achar SR, Straus MR, Whittaker GR, de Haan CAM, Kehrl J, Altan-Bonnet G, Altan-Bonnet N. Ghosh S, et al. Among authors: altan bonnet n. Cell. 2020 Dec 10;183(6):1520-1535.e14. doi: 10.1016/j.cell.2020.10.039. Epub 2020 Oct 27. Cell. 2020. PMID: 33157038 Free PMC article.
Vesicle-Cloaked Virus Clusters Are Optimal Units for Inter-organismal Viral Transmission.
Santiana M, Ghosh S, Ho BA, Rajasekaran V, Du WL, Mutsafi Y, De Jésus-Diaz DA, Sosnovtsev SV, Levenson EA, Parra GI, Takvorian PM, Cali A, Bleck C, Vlasova AN, Saif LJ, Patton JT, Lopalco P, Corcelli A, Green KY, Altan-Bonnet N. Santiana M, et al. Among authors: altan bonnet n. Cell Host Microbe. 2018 Aug 8;24(2):208-220.e8. doi: 10.1016/j.chom.2018.07.006. Cell Host Microbe. 2018. PMID: 30092198 Free PMC article.
Enterovirus Transmission by Secretory Autophagy.
Mutsafi Y, Altan-Bonnet N. Mutsafi Y, et al. Among authors: altan bonnet n. Viruses. 2018 Mar 20;10(3):139. doi: 10.3390/v10030139. Viruses. 2018. PMID: 29558400 Free PMC article. Review.
Infection with hepatitis C virus depends on TACSTD2, a regulator of claudin-1 and occludin highly downregulated in hepatocellular carcinoma.
Sekhar V, Pollicino T, Diaz G, Engle RE, Alayli F, Melis M, Kabat J, Tice A, Pomerenke A, Altan-Bonnet N, Zamboni F, Lusso P, Emerson SU, Farci P. Sekhar V, et al. Among authors: altan bonnet n. PLoS Pathog. 2018 Mar 14;14(3):e1006916. doi: 10.1371/journal.ppat.1006916. eCollection 2018 Mar. PLoS Pathog. 2018. PMID: 29538454 Free PMC article.
Lipid Tales of Viral Replication and Transmission.
Altan-Bonnet N. Altan-Bonnet N. Trends Cell Biol. 2017 Mar;27(3):201-213. doi: 10.1016/j.tcb.2016.09.011. Epub 2016 Nov 9. Trends Cell Biol. 2017. PMID: 27838086 Free PMC article. Review.
Correction: Influenza A Virus Assembly Intermediates Fuse in the Cytoplasm.
Lakdawala SS, Wu Y, Wawrzusin P, Kabat J, Broadbent AJ, Lamirande EW, Fodor E, Altan-Bonnet N, Shroff H, Subbarao K. Lakdawala SS, et al. Among authors: altan bonnet n. PLoS Pathog. 2016 Dec 27;12(12):e1006121. doi: 10.1371/journal.ppat.1006121. eCollection 2016 Dec. PLoS Pathog. 2016. PMID: 28027316 Free PMC article.
Cloud storage for endosomes.
Dellibovi-Ragheb T, Altan-Bonnet N. Dellibovi-Ragheb T, et al. Among authors: altan bonnet n. EMBO J. 2016 Aug 15;35(16):1724-5. doi: 10.15252/embj.201695080. Epub 2016 Jul 4. EMBO J. 2016. PMID: 27378788 Free PMC article.
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, Agnello M, Agostinis P, Aguilar PV, Aguirre-Ghiso J, Airoldi EM, Ait-Si-Ali S, Akematsu T, Akporiaye ET, Al-Rubeai M, Albaiceta GM, Albanese C, Albani D, Albert ML, Aldudo J, Algül H, Alirezaei M, Alloza I, Almasan A, Almonte-Beceril M, Alnemri ES, Alonso C, Altan-Bonnet N, Altieri DC, Alvarez S, Alvarez-Erviti L, Alves S, Amadoro G, Amano A, Amantini C, Ambrosio S, Amelio I, Amer AO, Amessou M, Amon A, An Z, Anania FA, Andersen SU, Andley UP, Andreadi CK, Andrieu-Abadie N, Anel A, Ann DK, Anoopkumar-Dukie S, Antonioli M, Aoki H, Apostolova N, Aquila S, Aquilano K, Araki K, Arama E, Aranda A, Araya J, Arcaro A, Arias E, Arimoto H, Ariosa AR, Armstrong JL, Arnould T, Arsov I, Asanuma K, Askanas V, Asselin E, Atarashi R, Atherton SS, Atkin JD, Attardi LD, Auberger P, Auburger G, Aurelian L, Autelli R, Avagliano L, Avantaggiati ML, Avrahami L, Awale S, Azad N, Bachetti T, Backer JM, Bae DH, Bae JS, Bae ON, Bae SH, Baehrecke EH, Baek SH, Baghdiguian S, Bagniewska-Zadworna A, Bai H, Bai J, Bai XY, Bailly Y, Bala… See abstract for full author list ➔ Klionsky DJ, et al. Among authors: altan bonnet n. Autophagy. 2016;12(1):1-222. doi: 10.1080/15548627.2015.1100356. Autophagy. 2016. PMID: 26799652 Free PMC article. No abstract available.
Phosphatidylserine vesicles enable efficient en bloc transmission of enteroviruses.
Chen YH, Du W, Hagemeijer MC, Takvorian PM, Pau C, Cali A, Brantner CA, Stempinski ES, Connelly PS, Ma HC, Jiang P, Wimmer E, Altan-Bonnet G, Altan-Bonnet N. Chen YH, et al. Among authors: altan bonnet n. Cell. 2015 Feb 12;160(4):619-630. doi: 10.1016/j.cell.2015.01.032. Cell. 2015. PMID: 25679758 Free PMC article.
Influenza a virus assembly intermediates fuse in the cytoplasm.
Lakdawala SS, Wu Y, Wawrzusin P, Kabat J, Broadbent AJ, Lamirande EW, Fodor E, Altan-Bonnet N, Shroff H, Subbarao K. Lakdawala SS, et al. Among authors: altan bonnet n. PLoS Pathog. 2014 Mar 6;10(3):e1003971. doi: 10.1371/journal.ppat.1003971. eCollection 2014 Mar. PLoS Pathog. 2014. PMID: 24603687 Free PMC article.
Molecular basis for Golgi maintenance and biogenesis.
Altan-Bonnet N, Sougrat R, Lippincott-Schwartz J. Altan-Bonnet N, et al. Curr Opin Cell Biol. 2004 Aug;16(4):364-72. doi: 10.1016/j.ceb.2004.06.011. Curr Opin Cell Biol. 2004. PMID: 15261668 Review.